AT1G74520

HVA22-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0013934
Physical Location & Seq
Reverse (-)
28007961 .. 28009451
1491 bp
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UTR
Exon/CDS
Intron
AT1G74520.2

Sequence Viewer

Length: 534 bp
ATGGGATCTGGAGCTGGCAATTTCCTCAAGGTTCTTCTCAGGAACTTCGATGTTCTTGCTGGGCCTGTGGTTAGTCTCGTTTATCCTCTATATGCTTCAGTTCAAGCGATTGAAACTCAATCTCATGCTGATGACAAACAATGGCTAACTTATTGGGTCCTTTATTCATTACTTACACTCATCGAGCTCACATTCGCCAAACTCATCGAATGGTTACCGATATGGTCATACATGAAGCTGATCTTGACTTGCTGGCTTGTTATTCCCTACTTTAGTGGCGCTGCTTATGTCTATGAACATTTTGTGAGACCGGTGTTTGTTAACCCTCGGAGCATTAACATTTGGTATGTGCCAAAGAAGATGGATATCTTCAGAAAACCAGACGATGTGTTAACAGCTGCTGAGAAGTACATTGCAGAGAATGGACCTGATGCTTTTGAGAAGATCTTAAGCCGGGCTGATAAATCAAAAAGATATAATAAGCATGAATATGAAAGCTATGAAACGATGTATGGTGAGGGTTATCAGTACTAA

Protein Analysis

177

Amino Acids

20.68

Weight (kDa)

6.3

Isoelectric Point (pI)

35.4

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TB2_DP1_HVA22 PF03134 29 - 105 1.1e-28 TB2/DP1, HVA22 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0013934)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G74520 AT1G74520
fragaria_vesca FvH4_5g15180
malus_domestica MD00G1186100.v1.1 MD06G1191500.v1.1 MD14G1197900.v1.1
prunus_persica Prupe.5G190000_v2.0.a1 Prupe.5G190000_v2.0.a1
pyrus_communis pycom06g16960
rosa_chinensis RchiOBHm_Chr7g0180981
rosa_multiflora Rmu_sc0004056.1_g000003
rosa_roxburghii Rroxscaffold_3G00272360
rosa_rugosa Rorug06G0438100 Rorug06G0438200
rosa_samantha Rh7CG040700 Rh7DG039100
rosa_wichuraiana Rw7G003250

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 13
AcuI CTGAAG 2 cut(s) 81, 355
AfaI GTAC 2 cut(s) 410, 530
AflII CTTAAG 1 cut(s) 448
AgeI ACCGGT 1 cut(s) 310
AgsI TTSAA 2 cut(s) 104, 113
AluBI AGCT 5 cut(s) 14, 187, 238, 398, 498
AluI AGCT 5 cut(s) 14, 187, 238, 398, 498
Alw21I GWGCWC 1 cut(s) 189
Alw26I GTCTC 2 cut(s) 80, 301
AlwI GGATC 1 cut(s) 13
AlwNI CAGNNNCTG 1 cut(s) 401
AoxI GGCC 1 cut(s) 62
ApeKI GCWGC 2 cut(s) 281, 398
AsiGI ACCGGT 1 cut(s) 310
AspLEI GCGC 1 cut(s) 281
AspS9I GGNCC 3 cut(s) 62, 157, 425
AsuC2I CCSGG 1 cut(s) 455
AsuHPI GGTGA 1 cut(s) 527
AvaII GGWCC 2 cut(s) 157, 425
BanII GRGCYC 1 cut(s) 189
Bbv12I GWGCWC 1 cut(s) 189
BbvI GCAGC 2 cut(s) 268, 385
BccI CCATC 1 cut(s) 355
BcgI CGANNNNNNTGC 2 cut(s) 38, 72
BcnI CCSGG 1 cut(s) 455
BcoDI GTCTC 2 cut(s) 80, 301
BfoI RGCGCY 1 cut(s) 282
BfrI CTTAAG 1 cut(s) 448
BglII AGATCT 1 cut(s) 444
BisI GCNGC 2 cut(s) 282, 399
BlsI GCNGC 2 cut(s) 283, 400
BmcAI AGTACT 1 cut(s) 530
Bme1390I CCNGG 1 cut(s) 455
Bme18I GGWCC 2 cut(s) 157, 425
BmgT120I GGNCC 3 cut(s) 62, 157, 425
BmiI GGNNCC 1 cut(s) 158
BmrFI CCNGG 1 cut(s) 455
BmsI GCATC 1 cut(s) 421
BpmI CTGGAG 1 cut(s) 30
BpuEI CTTGAG 1 cut(s) 11
BpuMI CCSGG 1 cut(s) 455
BsaBI GATNNNNATC 1 cut(s) 365
BsaI GGTCTC 1 cut(s) 301
BsaJI CCNNGG 1 cut(s) 326
BsaWI WCCGGW 1 cut(s) 310
Bse118I RCCGGY 1 cut(s) 310
Bse3DI GCAATG 1 cut(s) 411
Bse8I GATNNNNATC 1 cut(s) 365
BseDI CCNNGG 1 cut(s) 326
BseJI GATNNNNATC 1 cut(s) 365
BseMI GCAATG 1 cut(s) 411
BseMII CTCAG 2 cut(s) 52, 393
BseXI GCAGC 2 cut(s) 268, 385
BseYI CCCAGC 1 cut(s) 59
BshFI GGCC 1 cut(s) 64
BshTI ACCGGT 1 cut(s) 310
BsiHKAI GWGCWC 1 cut(s) 189
BsiSI CCGG 2 cut(s) 311, 454
BsmAI GTCTC 2 cut(s) 80, 301
BsnI GGCC 1 cut(s) 64
Bso31I GGTCTC 1 cut(s) 301
Bsp1286I GDGCHC 1 cut(s) 189
Bsp143I GATC 3 cut(s) 5, 240, 444
BspANI GGCC 1 cut(s) 64
BspCNI CTCAG 2 cut(s) 51, 394
BspLI GGNNCC 1 cut(s) 158
BspPI GGATC 1 cut(s) 13
BspTI CTTAAG 1 cut(s) 448
BspTNI GGTCTC 1 cut(s) 301
BsrDI GCAATG 1 cut(s) 411
BsrFI RCCGGY 1 cut(s) 310
BssAI RCCGGY 1 cut(s) 310
BssECI CCNNGG 1 cut(s) 326
BssMI GATC 3 cut(s) 5, 240, 444
BstAFI CTTAAG 1 cut(s) 448
BstC8I GCNNGC 2 cut(s) 16, 254
BstDEI CTNAG 2 cut(s) 38, 402
BstEII GGTNACC 1 cut(s) 213
BstH2I RGCGCY 1 cut(s) 282
BstHHI GCGC 1 cut(s) 281
BstKTI GATC 3 cut(s) 8, 243, 447
BstMAI GTCTC 2 cut(s) 80, 301
BstMBI GATC 3 cut(s) 5, 240, 444
BstPI GGTNACC 1 cut(s) 213
BstSCI CCNGG 1 cut(s) 453
BstV1I GCAGC 2 cut(s) 268, 385
BstX2I RGATCY 2 cut(s) 5, 444
BstYI RGATCY 2 cut(s) 5, 444
BsuRI GGCC 1 cut(s) 64
Cac8I GCNNGC 2 cut(s) 16, 254
CaiI CAGNNNCTG 1 cut(s) 401
CfoI GCGC 1 cut(s) 281
Cfr10I RCCGGY 1 cut(s) 310
Cfr13I GGNCC 3 cut(s) 62, 157, 425
Csp6I GTAC 2 cut(s) 409, 529
CspAI ACCGGT 1 cut(s) 310
CviAII CATG 3 cut(s) 125, 232, 485
CviQI GTAC 2 cut(s) 409, 529
DdeI CTNAG 2 cut(s) 38, 402
DpnI GATC 3 cut(s) 7, 242, 446
DpnII GATC 3 cut(s) 5, 240, 444
Ecl136II GAGCTC 1 cut(s) 187
Eco24I GRGCYC 1 cut(s) 189
Eco31I GGTCTC 1 cut(s) 301
Eco32I GATATC 1 cut(s) 367
Eco47I GGWCC 2 cut(s) 157, 425
Eco53kI GAGCTC 1 cut(s) 187
Eco57I CTGAAG 2 cut(s) 81, 355
Eco91I GGTNACC 1 cut(s) 213
EcoICRI GAGCTC 1 cut(s) 187
EcoO109I RGGNCCY 1 cut(s) 157
EcoO65I GGTNACC 1 cut(s) 213
EcoRV GATATC 1 cut(s) 367
EcoT38I GRGCYC 1 cut(s) 189
FaeI CATG 3 cut(s) 128, 235, 488
FalI AAGNNNNNCTT 2 cut(s) 227, 259
FatI CATG 3 cut(s) 124, 231, 484
Fnu4HI GCNGC 2 cut(s) 282, 399
FriOI GRGCYC 1 cut(s) 189
Fsp4HI GCNGC 2 cut(s) 282, 399
GlaI GCGC 1 cut(s) 280
GluI GCNGC 2 cut(s) 282, 399
GsaI CCCAGC 1 cut(s) 63
GsuI CTGGAG 1 cut(s) 30
HaeII RGCGCY 1 cut(s) 282
HaeIII GGCC 1 cut(s) 64
HapII CCGG 2 cut(s) 311, 454
HhaI GCGC 1 cut(s) 281
Hin1II CATG 3 cut(s) 128, 235, 488
Hin6I GCGC 1 cut(s) 279
HinP1I GCGC 1 cut(s) 279
HincII GTYRAC 2 cut(s) 322, 393
HindII GTYRAC 2 cut(s) 322, 393
HpaI GTTAAC 2 cut(s) 322, 393
HpaII CCGG 2 cut(s) 311, 454
HphI GGTGA 1 cut(s) 527
Hpy166II GTNNAC 2 cut(s) 322, 393
Hpy188I TCNGA 2 cut(s) 330, 374
Hpy188III TCNNGA 3 cut(s) 9, 40, 244
Hpy8I GTNNAC 2 cut(s) 322, 393
HpyCH4V TGCA 1 cut(s) 416
HpyF3I CTNAG 2 cut(s) 38, 402
Hsp92II CATG 3 cut(s) 128, 235, 488
HspAI GCGC 1 cut(s) 279
KspAI GTTAAC 2 cut(s) 322, 393
Kzo9I GATC 3 cut(s) 5, 240, 444
LmnI GCTCC 2 cut(s) 11, 330
LpnPI CCDG 8 cut(s) 25, 45, 78, 238, 324, 393, 441, 467
Lsp1109I GCAGC 2 cut(s) 268, 385
LweI GCATC 1 cut(s) 421
MaeIII GTNAC 1 cut(s) 213
MalI GATC 3 cut(s) 7, 242, 446
MboI GATC 3 cut(s) 5, 240, 444
MboII GAAGA 4 cut(s) 26, 361, 370, 454
MflI RGATCY 2 cut(s) 5, 444
MhlI GDGCHC 1 cut(s) 189
MluCI AATT 1 cut(s) 19
MnlI CCTC 4 cut(s) 35, 96, 336, 511
MseI TTAA 4 cut(s) 321, 336, 392, 449
MslI CAYNNNNRTG 2 cut(s) 129, 489
MspA1I CMGCKG 1 cut(s) 398
MspCI CTTAAG 1 cut(s) 448
MspI CCGG 2 cut(s) 311, 454
MspR9I CCNGG 1 cut(s) 455
NciI CCSGG 1 cut(s) 455
NdeII GATC 3 cut(s) 5, 240, 444
NlaIII CATG 3 cut(s) 128, 235, 488
NlaIV GGNNCC 1 cut(s) 158
PinAI ACCGGT 1 cut(s) 310
PkrI GCNGC 2 cut(s) 283, 400
PpuMI RGGWCCY 1 cut(s) 157
Psp124BI GAGCTC 1 cut(s) 189
Psp5II RGGWCCY 1 cut(s) 157
PspEI GGTNACC 1 cut(s) 213
PspFI CCCAGC 1 cut(s) 59
PspN4I GGNNCC 1 cut(s) 158
PspPI GGNCC 3 cut(s) 62, 157, 425
PspPPI RGGWCCY 1 cut(s) 157
PstNI CAGNNNCTG 1 cut(s) 401
PsuI RGATCY 2 cut(s) 5, 444
PvuII CAGCTG 1 cut(s) 398
RsaI GTAC 2 cut(s) 410, 530
RsaNI GTAC 2 cut(s) 409, 529
RseI CAYNNNNRTG 2 cut(s) 129, 489
SacI GAGCTC 1 cut(s) 189
SaqAI TTAA 4 cut(s) 321, 336, 392, 449
SatI GCNGC 2 cut(s) 282, 399
Sau3AI GATC 3 cut(s) 5, 240, 444
Sau96I GGNCC 3 cut(s) 62, 157, 425
ScaI AGTACT 1 cut(s) 530
ScrFI CCNGG 1 cut(s) 455
SduI GDGCHC 1 cut(s) 189
SetI ASST 7 cut(s) 16, 33, 189, 240, 400, 430, 500
SfaNI GCATC 1 cut(s) 421
SinI GGWCC 2 cut(s) 157, 425
SmiMI CAYNNNNRTG 2 cut(s) 129, 489
SmlI CTYRAG 2 cut(s) 26, 448
SmoI CTYRAG 2 cut(s) 26, 448
Sse9I AATT 1 cut(s) 19
SstI GAGCTC 1 cut(s) 189
StyD4I CCNGG 1 cut(s) 453
TaqI TCGA 3 cut(s) 48, 183, 207
TasI AATT 1 cut(s) 19
TatI WGTACW 2 cut(s) 408, 528
Tru1I TTAA 4 cut(s) 321, 336, 392, 449
Tru9I TTAA 4 cut(s) 321, 336, 392, 449
TseI GCWGC 2 cut(s) 281, 398
TspDTI ATGAA 6 cut(s) 156, 248, 309, 501, 507, 516
Vha464I CTTAAG 1 cut(s) 448
VpaK11BI GGWCC 2 cut(s) 157, 425
ZrmI AGTACT 1 cut(s) 530
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.