Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp05

Orthogroup ID

OG0013934

Physical Location & Seq

Genomic Coordinates Reverse (-)

15590862 .. 15592657

Gene Structure 1796 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.5G190000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 513 bp

ATGGGATCTGGTGCCGGCAGCTTCCTCAAAGTGCTTCTTAAGAACTTCGACGTTCTTGCTGGGCCTGTGGTTAGCCTTGTTTATCCACTATATGCCTCGATTAGGGCGATTGAGACACAGTCTCCTGCTGACGATCGCCAATGGCTCACGTATTGGATTCTGTATTCTATGATTACTTTGTTTGAGCTCACCTTTGCCAAAGCCATTGAGTGGATTCCGATCTGGTCATACGCAAAGCTAATTCTTACTTGTTGGTTGGTGATCCCATACTTCTGTGGTGCTGCATATGTGTATGAACAGTATATCAGACCTTTCTTTCTCAACCCACAGAGAGTTAACATTTGGTATGTTCCAAGGAAGAAGGATGTGAGTAAGCCGGATGACATTCTAATTGCTGCAGAGAAGTACATTGCAGAGAACGGGACTGAAGCCTTTGAGCAGATCATTCACAGGGCTGATAAGTACCAGAGCAGCGGGGGATCCGTCTATGATGAGGCATCTAGATATTATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0006950 GO:0006970 GO:0006972 GO:0008150 GO:0009266 GO:0009409 GO:0009414 GO:0009415 GO:0009628 GO:0009651 GO:0009719 GO:0009725 GO:0009737 GO:0010033 GO:0010035 GO:0033993 GO:0042221 GO:0042538 GO:0050896 GO:0097305 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TB2_DP1_HVA22

Protein Analysis

171

Amino Acids

19.64

Weight (kDa)

5.84

Isoelectric Point (pI)

40.18

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013934)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G74520 AT1G74520
fragaria_vesca	FvH4_5g15180
malus_domestica	MD00G1186100.v1.1 MD06G1191500.v1.1 MD14G1197900.v1.1
prunus_persica	Prupe.5G190000_v2.0.a1 Prupe.5G190000_v2.0.a1
pyrus_communis	pycom06g16960
rosa_chinensis	RchiOBHm_Chr7g0180981
rosa_multiflora	Rmu_sc0004056.1_g000003
rosa_roxburghii	Rroxscaffold_3G00272360
rosa_rugosa	Rorug06G0438100 Rorug06G0438200
rosa_samantha	Rh7CG040700 Rh7DG039100
rosa_wichuraiana	Rw7G003250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	11
AccB7I	CCANNNNNTGG	1 cut(s)	210
AciI	CCGC	1 cut(s)	474
AclWI	GGATC	4 cut(s)	13, 256, 474, 487
AcuI	CTGAAG	1 cut(s)	447
AfaI	GTAC	2 cut(s)	407, 464
AfiI	CCNNNNNNNGG	2 cut(s)	102, 210
AflII	CTTAAG	1 cut(s)	38
AluBI	AGCT	3 cut(s)	21, 187, 238
AluI	AGCT	3 cut(s)	21, 187, 238
Alw21I	GWGCWC	1 cut(s)	189
Alw26I	GTCTC	2 cut(s)	107, 126
AlwI	GGATC	4 cut(s)	13, 256, 474, 487
AoxI	GGCC	1 cut(s)	62
ApeKI	GCWGC	4 cut(s)	18, 281, 395, 471
AspS9I	GGNCC	1 cut(s)	62
AsuHPI	GGTGA	2 cut(s)	181, 271
BamHI	GGATCC	1 cut(s)	479
BanI	GGYRCC	1 cut(s)	11
BanII	GRGCYC	1 cut(s)	189
Bbv12I	GWGCWC	1 cut(s)	189
BbvI	GCAGC	4 cut(s)	30, 268, 382, 483
BcgI	CGANNNNNNTGC	2 cut(s)	38, 72
BcoDI	GTCTC	2 cut(s)	107, 126
BfaI	CTAG	1 cut(s)	501
BfmI	CTRYAG	1 cut(s)	396
BfrI	CTTAAG	1 cut(s)	38
BisI	GCNGC	4 cut(s)	19, 282, 396, 472
BlsI	GCNGC	4 cut(s)	20, 283, 397, 473
BmgT120I	GGNCC	1 cut(s)	62
BmiI	GGNNCC	2 cut(s)	13, 481
BmsI	GCATC	1 cut(s)	506
BsaAI	YACGTR	1 cut(s)	150
BsaBI	GATNNNNATC	1 cut(s)	218
BsaJI	CCNNGG	1 cut(s)	353
BsaXI	ACNNNNNCTCC	2 cut(s)	106, 136
Bsc4I	CCNNNNNNNGG	2 cut(s)	102, 210
Bse118I	RCCGGY	1 cut(s)	14
Bse3DI	GCAATG	1 cut(s)	408
Bse8I	GATNNNNATC	1 cut(s)	218
BseDI	CCNNGG	1 cut(s)	353
BseGI	GGATG	2 cut(s)	370, 385
BseJI	GATNNNNATC	1 cut(s)	218
BseLI	CCNNNNNNNGG	2 cut(s)	102, 210
BseMI	GCAATG	1 cut(s)	408
BseXI	GCAGC	4 cut(s)	30, 268, 382, 483
BseYI	CCCAGC	1 cut(s)	59
Bsh1285I	CGRYCG	1 cut(s)	136
BshFI	GGCC	1 cut(s)	64
BshNI	GGYRCC	1 cut(s)	11
BsiEI	CGRYCG	1 cut(s)	136
BsiHKAI	GWGCWC	1 cut(s)	189
BsiSI	CCGG	2 cut(s)	15, 377
BslFI	GGGAC	1 cut(s)	436
BslI	CCNNNNNNNGG	2 cut(s)	102, 210
BsmAI	GTCTC	2 cut(s)	107, 126
BsmFI	GGGAC	1 cut(s)	436
BsnI	GGCC	1 cut(s)	64
Bsp1286I	GDGCHC	1 cut(s)	189
Bsp143I	GATC	6 cut(s)	5, 133, 219, 261, 441, 479
BspACI	CCGC	1 cut(s)	474
BspANI	GGCC	1 cut(s)	64
BspLI	GGNNCC	2 cut(s)	13, 481
BspMAI	CTGCAG	1 cut(s)	400
BspPI	GGATC	4 cut(s)	13, 256, 474, 487
BspT107I	GGYRCC	1 cut(s)	11
BspTI	CTTAAG	1 cut(s)	38
BsrDI	GCAATG	1 cut(s)	408
BsrFI	RCCGGY	1 cut(s)	14
BssAI	RCCGGY	1 cut(s)	14
BssECI	CCNNGG	1 cut(s)	353
BssMI	GATC	6 cut(s)	5, 133, 219, 261, 441, 479
BssT1I	CCWWGG	1 cut(s)	353
Bst4CI	ACNGT	2 cut(s)	120, 300
BstAFI	CTTAAG	1 cut(s)	38
BstBAI	YACGTR	1 cut(s)	150
BstC8I	GCNNGC	1 cut(s)	16
BstENI	CCTNNNNNAGG	1 cut(s)	100
BstF5I	GGATG	2 cut(s)	370, 385
BstKTI	GATC	6 cut(s)	8, 136, 222, 264, 444, 482
BstMAI	GTCTC	2 cut(s)	107, 126
BstMBI	GATC	6 cut(s)	5, 133, 219, 261, 441, 479
BstMCI	CGRYCG	1 cut(s)	136
BstSFI	CTRYAG	1 cut(s)	396
BstV1I	GCAGC	4 cut(s)	30, 268, 382, 483
BstX2I	RGATCY	2 cut(s)	5, 479
BstYI	RGATCY	2 cut(s)	5, 479
BsuRI	GGCC	1 cut(s)	64
BtsCI	GGATG	2 cut(s)	370, 385
Cac8I	GCNNGC	1 cut(s)	16
Cfr10I	RCCGGY	1 cut(s)	14
Cfr13I	GGNCC	1 cut(s)	62
Csp6I	GTAC	2 cut(s)	406, 463
CviQI	GTAC	2 cut(s)	406, 463
DpnI	GATC	6 cut(s)	7, 135, 221, 263, 443, 481
DpnII	GATC	6 cut(s)	5, 133, 219, 261, 441, 479
Ecl136II	GAGCTC	1 cut(s)	187
Eco130I	CCWWGG	1 cut(s)	353
Eco24I	GRGCYC	1 cut(s)	189
Eco53kI	GAGCTC	1 cut(s)	187
Eco57I	CTGAAG	1 cut(s)	447
EcoICRI	GAGCTC	1 cut(s)	187
EcoNI	CCTNNNNNAGG	1 cut(s)	100
EcoT14I	CCWWGG	1 cut(s)	353
EcoT38I	GRGCYC	1 cut(s)	189
ErhI	CCWWGG	1 cut(s)	353
FalI	AAGNNNNNCTT	2 cut(s)	21, 53
FaqI	GGGAC	1 cut(s)	436
FauI	CCCGC	1 cut(s)	467
FauNDI	CATATG	1 cut(s)	286
Fnu4HI	GCNGC	4 cut(s)	19, 282, 396, 472
FokI	GGATG	2 cut(s)	377, 392
FriOI	GRGCYC	1 cut(s)	189
Fsp4HI	GCNGC	4 cut(s)	19, 282, 396, 472
FspBI	CTAG	1 cut(s)	501
GluI	GCNGC	4 cut(s)	19, 282, 396, 472
GsaI	CCCAGC	1 cut(s)	63
HaeIII	GGCC	1 cut(s)	64
HapII	CCGG	2 cut(s)	15, 377
HincII	GTYRAC	1 cut(s)	337
HindII	GTYRAC	1 cut(s)	337
HinfI	GANTC	2 cut(s)	157, 214
HpaI	GTTAAC	1 cut(s)	337
HpaII	CCGG	2 cut(s)	15, 377
HphI	GGTGA	2 cut(s)	181, 271
Hpy166II	GTNNAC	1 cut(s)	337
Hpy188I	TCNGA	2 cut(s)	219, 308
Hpy188III	TCNNGA	1 cut(s)	501
Hpy8I	GTNNAC	1 cut(s)	337
Hpy99I	CGWCG	1 cut(s)	53
HpyAV	CCTTC	1 cut(s)	355
HpyCH4III	ACNGT	2 cut(s)	120, 300
HpyCH4IV	ACGT	2 cut(s)	51, 149
HpyCH4V	TGCA	3 cut(s)	284, 398, 413
HpySE526I	ACGT	2 cut(s)	51, 149
KroI	GCCGGC	1 cut(s)	14
KroNI	GCCGGC	1 cut(s)	16
KspAI	GTTAAC	1 cut(s)	337
Kzo9I	GATC	6 cut(s)	5, 133, 219, 261, 441, 479
LpnPI	CCDG	8 cut(s)	28, 45, 78, 138, 208, 390, 436, 479
Lsp1109I	GCAGC	4 cut(s)	30, 268, 382, 483
LweI	GCATC	1 cut(s)	506
MaeI	CTAG	1 cut(s)	501
MaeII	ACGT	2 cut(s)	51, 149
MalI	GATC	6 cut(s)	7, 135, 221, 263, 443, 481
MboI	GATC	6 cut(s)	5, 133, 219, 261, 441, 479
MboII	GAAGA	1 cut(s)	370
MflI	RGATCY	2 cut(s)	5, 479
MhlI	GDGCHC	1 cut(s)	189
MluCI	AATT	2 cut(s)	240, 390
MnlI	CCTC	3 cut(s)	35, 106, 487
MroNI	GCCGGC	1 cut(s)	14
MseI	TTAA	2 cut(s)	39, 336
MspA1I	CMGCKG	1 cut(s)	474
MspCI	CTTAAG	1 cut(s)	38
MspI	CCGG	2 cut(s)	15, 377
NaeI	GCCGGC	1 cut(s)	16
NdeI	CATATG	1 cut(s)	286
NdeII	GATC	6 cut(s)	5, 133, 219, 261, 441, 479
NgoMIV	GCCGGC	1 cut(s)	14
NlaIV	GGNNCC	2 cut(s)	13, 481
PcsI	WCGNNNNNNNCGW	1 cut(s)	104
PdiI	GCCGGC	1 cut(s)	16
PfeI	GAWTC	2 cut(s)	157, 214
PflFI	GACNNNGTC	1 cut(s)	118
PflMI	CCANNNNNTGG	1 cut(s)	210
PkrI	GCNGC	4 cut(s)	20, 283, 397, 473
Ple19I	CGATCG	1 cut(s)	136
Ppu21I	YACGTR	1 cut(s)	150
Psp124BI	GAGCTC	1 cut(s)	189
PspFI	CCCAGC	1 cut(s)	59
PspN4I	GGNNCC	2 cut(s)	13, 481
PspPI	GGNCC	1 cut(s)	62
PstI	CTGCAG	1 cut(s)	400
PsuI	RGATCY	2 cut(s)	5, 479
PsyI	GACNNNGTC	1 cut(s)	118
PvuI	CGATCG	1 cut(s)	136
RsaI	GTAC	2 cut(s)	407, 464
RsaNI	GTAC	2 cut(s)	406, 463
SacI	GAGCTC	1 cut(s)	189
SaqAI	TTAA	2 cut(s)	39, 336
SatI	GCNGC	4 cut(s)	19, 282, 396, 472
Sau3AI	GATC	6 cut(s)	5, 133, 219, 261, 441, 479
Sau96I	GGNCC	1 cut(s)	62
SduI	GDGCHC	1 cut(s)	189
SetI	ASST	7 cut(s)	23, 54, 152, 189, 194, 240, 313
SfaNI	GCATC	1 cut(s)	506
SfcI	CTRYAG	1 cut(s)	396
SmlI	CTYRAG	1 cut(s)	38
SmoI	CTYRAG	1 cut(s)	38
Sse9I	AATT	2 cut(s)	240, 390
SsiI	CCGC	1 cut(s)	474
SspMI	CTAG	1 cut(s)	501
SstI	GAGCTC	1 cut(s)	189
StyI	CCWWGG	1 cut(s)	353
TaaI	ACNGT	2 cut(s)	120, 300
TaiI	ACGT	2 cut(s)	54, 152
TaqI	TCGA	2 cut(s)	48, 98
TasI	AATT	2 cut(s)	240, 390
TatI	WGTACW	1 cut(s)	405
TfiI	GAWTC	2 cut(s)	157, 214
Tru1I	TTAA	2 cut(s)	39, 336
Tru9I	TTAA	2 cut(s)	39, 336
TseI	GCWGC	4 cut(s)	18, 281, 395, 471
TspDTI	ATGAA	1 cut(s)	309
TspGWI	ACGGA	1 cut(s)	472
Tth111I	GACNNNGTC	1 cut(s)	118
Van91I	CCANNNNNTGG	1 cut(s)	210
Vha464I	CTTAAG	1 cut(s)	38
XagI	CCTNNNNNAGG	1 cut(s)	100
XbaI	TCTAGA	1 cut(s)	500
XspI	CTAG	1 cut(s)	501

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.