Rh7CG040700

HVA22-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7C
OG0013934
Physical Location & Seq
Reverse (-)
2712993 .. 2714706
1714 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7CG040700.1

Sequence Viewer

Length: 516 bp
ATGATCCTTGTTTTTTTTCCTTATGCATTGTTCTGTGTTCTTGTTAAATCCTCTGTAATTTGGCTAATTGATTCTGGGTTGTTGTGTAGGTATGCCTCAATTCGGGCTATAGAGACCAAATCTCCAACTGATGACCGCCAATGGCTTACGTATTGGATTCTCTATTCTATGATTACACTCATTGAGCTCACCTTTGCCAAACTTATTGAGTGGATCCCAGTCTGGTCATATGCCAAGCTGATCATGACTTGTTGGTTGGTCATCCCATACTTCAGTGGTGCTGCATATGTCTACGAACACTATGTCAGGCCGTTTTTCCTCAACCCACAGACAATCAACATTTGGTACGTTCCAAAGAAGAAGGATGTCTTCAGTAAGCCGGATGATATTCTAACAGCTGCAGAGAAGTACATTGAAGAGAATGGTACTGAAGCATTTGAGACGCTCATTCACAGGTCTGACAAGTCCCAAAGGAGTGGAGGATTCATCTTTGATGATGATCATAAGTACTACTGA

Protein Analysis

171

Amino Acids

20.23

Weight (kDa)

5.9

Isoelectric Point (pI)

54.22

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TB2_DP1_HVA22 PF03134 31 - 105 3e-27 TB2/DP1, HVA22 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0013934)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G74520 AT1G74520
fragaria_vesca FvH4_5g15180
malus_domestica MD00G1186100.v1.1 MD06G1191500.v1.1 MD14G1197900.v1.1
prunus_persica Prupe.5G190000_v2.0.a1 Prupe.5G190000_v2.0.a1
pyrus_communis pycom06g16960
rosa_chinensis RchiOBHm_Chr7g0180981
rosa_multiflora Rmu_sc0004056.1_g000003
rosa_roxburghii Rroxscaffold_3G00272360
rosa_rugosa Rorug06G0438100 Rorug06G0438200
rosa_samantha Rh7CG040700 Rh7DG039100
rosa_wichuraiana Rw7G003250

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 291
AciI CCGC 1 cut(s) 136
AclWI GGATC 2 cut(s) 208, 221
AcuI CTGAAG 3 cut(s) 256, 355, 450
AfaI GTAC 4 cut(s) 347, 410, 427, 509
AfiI CCNNNNNNNGG 1 cut(s) 102
AgsI TTSAA 1 cut(s) 416
AluBI AGCT 3 cut(s) 187, 238, 398
AluI AGCT 3 cut(s) 187, 238, 398
Alw21I GWGCWC 1 cut(s) 189
Alw26I GTCTC 2 cut(s) 107, 434
AlwI GGATC 2 cut(s) 208, 221
AoxI GGCC 1 cut(s) 308
ApeKI GCWGC 2 cut(s) 281, 398
ArsI GACNNNNNNTTYG 2 cut(s) 288, 320
AsuHPI GGTGA 1 cut(s) 181
BamHI GGATCC 1 cut(s) 213
BanII GRGCYC 1 cut(s) 189
BbsI GAAGAC 1 cut(s) 361
Bbv12I GWGCWC 1 cut(s) 189
BbvI GCAGC 2 cut(s) 268, 385
BceAI ACGGC 1 cut(s) 295
BclI TGATCA 2 cut(s) 240, 499
BcoDI GTCTC 2 cut(s) 107, 434
BfmI CTRYAG 2 cut(s) 108, 399
BisI GCNGC 2 cut(s) 282, 399
BlsI GCNGC 2 cut(s) 283, 400
BmcAI AGTACT 1 cut(s) 509
BmiI GGNNCC 1 cut(s) 215
BmrI ACTGGG 1 cut(s) 212
BmuI ACTGGG 1 cut(s) 212
BpiI GAAGAC 1 cut(s) 361
BsaAI YACGTR 1 cut(s) 150
BsaBI GATNNNNATC 1 cut(s) 498
BsaI GGTCTC 1 cut(s) 107
BsaXI ACNNNNNCTCC 2 cut(s) 106, 136
Bsc4I CCNNNNNNNGG 1 cut(s) 102
Bse1I ACTGG 1 cut(s) 218
Bse8I GATNNNNATC 1 cut(s) 498
BseGI GGATG 3 cut(s) 261, 370, 388
BseJI GATNNNNATC 1 cut(s) 498
BseLI CCNNNNNNNGG 1 cut(s) 102
BseNI ACTGG 1 cut(s) 218
BseXI GCAGC 2 cut(s) 268, 385
BshFI GGCC 1 cut(s) 310
BsiHKAI GWGCWC 1 cut(s) 189
BsiSI CCGG 1 cut(s) 380
BslFI GGGAC 1 cut(s) 451
BslI CCNNNNNNNGG 1 cut(s) 102
BsmAI GTCTC 2 cut(s) 107, 434
BsmBI CGTCTC 1 cut(s) 434
BsmFI GGGAC 1 cut(s) 451
BsnI GGCC 1 cut(s) 310
Bso31I GGTCTC 1 cut(s) 107
Bsp1286I GDGCHC 1 cut(s) 189
Bsp143I GATC 4 cut(s) 3, 213, 240, 499
BspACI CCGC 1 cut(s) 136
BspANI GGCC 1 cut(s) 310
BspHI TCATGA 1 cut(s) 243
BspLI GGNNCC 1 cut(s) 215
BspMAI CTGCAG 1 cut(s) 403
BspPI GGATC 2 cut(s) 208, 221
BspTNI GGTCTC 1 cut(s) 107
BsrI ACTGG 1 cut(s) 218
BssMI GATC 4 cut(s) 3, 213, 240, 499
Bst6I CTCTTC 1 cut(s) 411
BstBAI YACGTR 1 cut(s) 150
BstF5I GGATG 3 cut(s) 261, 370, 388
BstKTI GATC 4 cut(s) 6, 216, 243, 502
BstMAI GTCTC 2 cut(s) 107, 434
BstMBI GATC 4 cut(s) 3, 213, 240, 499
BstSFI CTRYAG 2 cut(s) 108, 399
BstSNI TACGTA 1 cut(s) 150
BstV1I GCAGC 2 cut(s) 268, 385
BstV2I GAAGAC 1 cut(s) 361
BstX2I RGATCY 1 cut(s) 213
BstXI CCANNNNNNTGG 1 cut(s) 476
BstYI RGATCY 1 cut(s) 213
BsuRI GGCC 1 cut(s) 310
BtsCI GGATG 3 cut(s) 261, 370, 388
BtsIMutI CAGTG 1 cut(s) 280
CciI TCATGA 1 cut(s) 243
CseI GACGC 1 cut(s) 451
Csp6I GTAC 4 cut(s) 346, 409, 426, 508
CviAII CATG 1 cut(s) 244
CviJI RGCY 8 cut(s) 64, 107, 145, 187, 238, 310, 379, 398
CviKI_1 RGCY 8 cut(s) 64, 107, 145, 187, 238, 310, 379, 398
CviQI GTAC 4 cut(s) 346, 409, 426, 508
DpnI GATC 4 cut(s) 5, 215, 242, 501
DpnII GATC 4 cut(s) 3, 213, 240, 499
Eam1104I CTCTTC 1 cut(s) 411
EarI CTCTTC 1 cut(s) 411
Ecl136II GAGCTC 1 cut(s) 187
Eco105I TACGTA 1 cut(s) 150
Eco24I GRGCYC 1 cut(s) 189
Eco31I GGTCTC 1 cut(s) 107
Eco53kI GAGCTC 1 cut(s) 187
Eco57I CTGAAG 3 cut(s) 256, 355, 450
EcoICRI GAGCTC 1 cut(s) 187
EcoT22I ATGCAT 1 cut(s) 28
EcoT38I GRGCYC 1 cut(s) 189
Esp3I CGTCTC 1 cut(s) 434
FaeI CATG 1 cut(s) 247
FalI AAGNNNNNCTT 2 cut(s) 353, 385
FaqI GGGAC 1 cut(s) 451
FatI CATG 1 cut(s) 243
FauNDI CATATG 2 cut(s) 229, 286
FbaI TGATCA 2 cut(s) 240, 499
FblI GTMKAC 1 cut(s) 291
Fnu4HI GCNGC 2 cut(s) 282, 399
FokI GGATG 3 cut(s) 248, 377, 395
FriOI GRGCYC 1 cut(s) 189
Fsp4HI GCNGC 2 cut(s) 282, 399
GluI GCNGC 2 cut(s) 282, 399
HaeIII GGCC 1 cut(s) 310
HapII CCGG 1 cut(s) 380
HgaI GACGC 1 cut(s) 451
Hin1II CATG 1 cut(s) 247
HinfI GANTC 3 cut(s) 71, 157, 483
HpaII CCGG 1 cut(s) 380
HphI GGTGA 1 cut(s) 181
Hpy166II GTNNAC 1 cut(s) 292
Hpy188I TCNGA 1 cut(s) 460
Hpy188III TCNNGA 1 cut(s) 244
Hpy8I GTNNAC 1 cut(s) 292
HpyAV CCTTC 1 cut(s) 355
HpyCH4IV ACGT 2 cut(s) 149, 348
HpyCH4V TGCA 3 cut(s) 26, 284, 401
HpySE526I ACGT 2 cut(s) 149, 348
Hsp92II CATG 1 cut(s) 247
Ksp22I TGATCA 2 cut(s) 240, 499
Kzo9I GATC 4 cut(s) 3, 213, 240, 499
LpnPI CCDG 6 cut(s) 60, 208, 231, 292, 393, 439
Lsp1109I GCAGC 2 cut(s) 268, 385
MaeII ACGT 2 cut(s) 149, 348
MalI GATC 4 cut(s) 5, 215, 242, 501
MboI GATC 4 cut(s) 3, 213, 240, 499
MboII GAAGA 3 cut(s) 361, 370, 428
MflI RGATCY 1 cut(s) 213
MhlI GDGCHC 1 cut(s) 189
MluCI AATT 3 cut(s) 57, 66, 99
MmeI TCCRAC 1 cut(s) 149
MnlI CCTC 4 cut(s) 61, 106, 329, 473
Mph1103I ATGCAT 1 cut(s) 28
MseI TTAA 1 cut(s) 45
MspA1I CMGCKG 1 cut(s) 398
MspI CCGG 1 cut(s) 380
NdeI CATATG 2 cut(s) 229, 286
NdeII GATC 4 cut(s) 3, 213, 240, 499
NlaIII CATG 1 cut(s) 247
NlaIV GGNNCC 1 cut(s) 215
NsiI ATGCAT 1 cut(s) 28
PagI TCATGA 1 cut(s) 243
PfeI GAWTC 3 cut(s) 71, 157, 483
PkrI GCNGC 2 cut(s) 283, 400
Ppu21I YACGTR 1 cut(s) 150
Psp124BI GAGCTC 1 cut(s) 189
PspN4I GGNNCC 1 cut(s) 215
PstI CTGCAG 1 cut(s) 403
PsuI RGATCY 1 cut(s) 213
PvuII CAGCTG 1 cut(s) 398
RsaI GTAC 4 cut(s) 347, 410, 427, 509
RsaNI GTAC 4 cut(s) 346, 409, 426, 508
SacI GAGCTC 1 cut(s) 189
SaqAI TTAA 1 cut(s) 45
SatI GCNGC 2 cut(s) 282, 399
Sau3AI GATC 4 cut(s) 3, 213, 240, 499
ScaI AGTACT 1 cut(s) 509
SduI GDGCHC 1 cut(s) 189
SetI ASST 8 cut(s) 92, 152, 189, 194, 240, 351, 400, 458
SfcI CTRYAG 2 cut(s) 108, 399
SnaBI TACGTA 1 cut(s) 150
Sse9I AATT 3 cut(s) 57, 66, 99
SsiI CCGC 1 cut(s) 136
SstI GAGCTC 1 cut(s) 189
TaiI ACGT 2 cut(s) 152, 351
TasI AATT 3 cut(s) 57, 66, 99
TatI WGTACW 2 cut(s) 408, 507
TfiI GAWTC 3 cut(s) 71, 157, 483
Tru1I TTAA 1 cut(s) 45
Tru9I TTAA 1 cut(s) 45
TscAI CASTG 1 cut(s) 280
TseI GCWGC 2 cut(s) 281, 398
TspDTI ATGAA 1 cut(s) 475
TspRI CASTG 1 cut(s) 280
XmiI GTMKAC 1 cut(s) 291
ZrmI AGTACT 1 cut(s) 509
Zsp2I ATGCAT 1 cut(s) 28
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.