MD06G1191500.v1.1

HVA22-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr06
OG0013934
Physical Location & Seq
Reverse (-)
32733816 .. 32735456
1641 bp
Loading structure...
UTR
Exon/CDS
Intron
MD06G1191500.v1.1.491

Sequence Viewer

Length: 498 bp
ATGGGATCTGGCGCTGGCAGCTTCCTCAAAGTGCTTCTCAGGAACTTCGACGTTCTTGCTGGGCCTGTGGTTAGCCTTGTTTATCCACTATACGCATCGATTCGAGCGATAGAGACGCAGTCTCCGGCCGACGATCGCCAATGGCTGACTTACTGGATTCTGTATTCTATGATCACTCTGTTTGAACTCACCTTCGCCAAAGTCATTGAGTGGATTCCAATCTGGTCTTACGCGAAGCTGATTGCGACTTTTTGGTTGGTCCTCCCATACACGAGTGGCGCTGCGTATGTTTATGAACATTATATCCGACCTTTCTTTCTCAACCCACATAAAGTTAACATTTGGTATGTTCCGAGGAAGAAGGATGTATCGGGCAAGGCAAACCCAGGCGACATTCCGGCTGTTGTGGAGCAATACATTGCAGAGAATGGGATTGAAGCATTCGAGAAGATCATCCACAGGGCTGATAACAACCAGAGGGGCATCCGTCTTCGATGA

Protein Analysis

166

Amino Acids

18.98

Weight (kDa)

9.07

Isoelectric Point (pI)

36.99

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TB2_DP1_HVA22 PF03134 29 - 105 2e-28 TB2/DP1, HVA22 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0013934)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G74520 AT1G74520
fragaria_vesca FvH4_5g15180
malus_domestica MD00G1186100.v1.1 MD06G1191500.v1.1 MD14G1197900.v1.1
prunus_persica Prupe.5G190000_v2.0.a1 Prupe.5G190000_v2.0.a1
pyrus_communis pycom06g16960
rosa_chinensis RchiOBHm_Chr7g0180981
rosa_multiflora Rmu_sc0004056.1_g000003
rosa_roxburghii Rroxscaffold_3G00272360
rosa_rugosa Rorug06G0438100 Rorug06G0438200
rosa_samantha Rh7CG040700 Rh7DG039100
rosa_wichuraiana Rw7G003250

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 233
AclWI GGATC 1 cut(s) 13
AcoI YGGCCR 1 cut(s) 126
AgsI TTSAA 2 cut(s) 185, 437
AjnI CCWGG 1 cut(s) 385
AloI GAACNNNNNNTCC 2 cut(s) 288, 320
AluBI AGCT 2 cut(s) 21, 238
AluI AGCT 2 cut(s) 21, 238
Alw26I GTCTC 2 cut(s) 107, 126
AlwI GGATC 1 cut(s) 13
AoxI GGCC 2 cut(s) 62, 126
ApeKI GCWGC 2 cut(s) 18, 281
AspLEI GCGC 2 cut(s) 14, 281
AspS9I GGNCC 2 cut(s) 62, 259
AsuHPI GGTGA 1 cut(s) 181
AvaII GGWCC 1 cut(s) 259
BauI CACGAG 1 cut(s) 271
BbsI GAAGAC 1 cut(s) 482
BbvI GCAGC 2 cut(s) 30, 268
BcgI CGANNNNNNTGC 2 cut(s) 38, 72
BciT130I CCWGG 1 cut(s) 387
BclI TGATCA 1 cut(s) 171
BcoDI GTCTC 2 cut(s) 107, 126
BfoI RGCGCY 2 cut(s) 15, 282
BisI GCNGC 2 cut(s) 19, 282
BlsI GCNGC 2 cut(s) 20, 283
Bme1390I CCNGG 1 cut(s) 387
Bme18I GGWCC 1 cut(s) 259
BmgT120I GGNCC 2 cut(s) 62, 259
BmrFI CCNGG 1 cut(s) 387
BmsI GCATC 2 cut(s) 104, 492
BpiI GAAGAC 1 cut(s) 482
Bsa29I ATCGAT 1 cut(s) 98
BsaBI GATNNNNATC 1 cut(s) 218
BsaJI CCNNGG 2 cut(s) 353, 385
BsaXI ACNNNNNCTCC 2 cut(s) 106, 136
Bse1I ACTGG 1 cut(s) 158
Bse3DI GCAATG 1 cut(s) 417
Bse8I GATNNNNATC 1 cut(s) 218
BseBI CCWGG 1 cut(s) 387
BseCI ATCGAT 1 cut(s) 98
BseDI CCNNGG 2 cut(s) 353, 385
BseGI GGATG 3 cut(s) 370, 453, 483
BseJI GATNNNNATC 1 cut(s) 218
BseMI GCAATG 1 cut(s) 417
BseMII CTCAG 1 cut(s) 52
BseNI ACTGG 1 cut(s) 158
BseX3I CGGCCG 1 cut(s) 126
BseXI GCAGC 2 cut(s) 30, 268
BseYI CCCAGC 1 cut(s) 59
Bsh1236I CGCG 1 cut(s) 233
Bsh1285I CGRYCG 2 cut(s) 129, 136
BshFI GGCC 2 cut(s) 64, 128
BshVI ATCGAT 1 cut(s) 98
BsiEI CGRYCG 2 cut(s) 129, 136
BsiSI CCGG 2 cut(s) 125, 398
BsmAI GTCTC 2 cut(s) 107, 126
BsmBI CGTCTC 1 cut(s) 107
BsmI GAATGC 1 cut(s) 440
BsnI GGCC 2 cut(s) 64, 128
Bsp143I GATC 4 cut(s) 5, 133, 171, 450
BspANI GGCC 2 cut(s) 64, 128
BspCNI CTCAG 1 cut(s) 51
BspDI ATCGAT 1 cut(s) 98
BspFNI CGCG 1 cut(s) 233
BspPI GGATC 1 cut(s) 13
BsrDI GCAATG 1 cut(s) 417
BsrI ACTGG 1 cut(s) 158
BssECI CCNNGG 2 cut(s) 353, 385
BssMI GATC 4 cut(s) 5, 133, 171, 450
BssSI CACGAG 1 cut(s) 271
Bst2BI CACGAG 1 cut(s) 271
Bst2UI CCWGG 1 cut(s) 387
BstC8I GCNNGC 1 cut(s) 16
BstDEI CTNAG 1 cut(s) 38
BstF5I GGATG 3 cut(s) 370, 453, 483
BstFNI CGCG 1 cut(s) 233
BstH2I RGCGCY 2 cut(s) 15, 282
BstHHI GCGC 2 cut(s) 14, 281
BstKTI GATC 4 cut(s) 8, 136, 174, 453
BstMAI GTCTC 2 cut(s) 107, 126
BstMBI GATC 4 cut(s) 5, 133, 171, 450
BstMCI CGRYCG 2 cut(s) 129, 136
BstMWI GCNNNNNNNGC 1 cut(s) 18
BstNI CCWGG 1 cut(s) 387
BstSCI CCNGG 1 cut(s) 385
BstUI CGCG 1 cut(s) 233
BstV1I GCAGC 2 cut(s) 30, 268
BstV2I GAAGAC 1 cut(s) 482
BstX2I RGATCY 1 cut(s) 5
BstYI RGATCY 1 cut(s) 5
BstZI CGGCCG 1 cut(s) 126
Bsu15I ATCGAT 1 cut(s) 98
BsuRI GGCC 2 cut(s) 64, 128
BsuTUI ATCGAT 1 cut(s) 98
BtsCI GGATG 3 cut(s) 370, 453, 483
Cac8I GCNNGC 1 cut(s) 16
CfoI GCGC 2 cut(s) 14, 281
Cfr13I GGNCC 2 cut(s) 62, 259
ClaI ATCGAT 1 cut(s) 98
CseI GACGC 1 cut(s) 124
CviJI RGCY 8 cut(s) 21, 64, 75, 128, 145, 238, 401, 464
CviKI_1 RGCY 8 cut(s) 21, 64, 75, 128, 145, 238, 401, 464
DdeI CTNAG 1 cut(s) 38
DpnI GATC 4 cut(s) 7, 135, 173, 452
DpnII GATC 4 cut(s) 5, 133, 171, 450
EaeI YGGCCR 1 cut(s) 126
EagI CGGCCG 1 cut(s) 126
EclXI CGGCCG 1 cut(s) 126
Eco47I GGWCC 1 cut(s) 259
Eco52I CGGCCG 1 cut(s) 126
EcoRII CCWGG 1 cut(s) 385
Esp3I CGTCTC 1 cut(s) 107
FaiI YATR 8 cut(s) 91, 170, 268, 288, 294, 303, 330, 348
FbaI TGATCA 1 cut(s) 171
Fnu4HI GCNGC 2 cut(s) 19, 282
FokI GGATG 3 cut(s) 377, 440, 470
Fsp4HI GCNGC 2 cut(s) 19, 282
GlaI GCGC 2 cut(s) 13, 280
GluI GCNGC 2 cut(s) 19, 282
GsaI CCCAGC 1 cut(s) 63
HaeII RGCGCY 2 cut(s) 15, 282
HaeIII GGCC 2 cut(s) 64, 128
HapII CCGG 2 cut(s) 125, 398
HgaI GACGC 1 cut(s) 124
HhaI GCGC 2 cut(s) 14, 281
Hin6I GCGC 2 cut(s) 12, 279
HinP1I GCGC 2 cut(s) 12, 279
HincII GTYRAC 1 cut(s) 337
HindII GTYRAC 1 cut(s) 337
HinfI GANTC 3 cut(s) 100, 157, 214
HpaI GTTAAC 1 cut(s) 337
HpaII CCGG 2 cut(s) 125, 398
HphI GGTGA 1 cut(s) 181
Hpy166II GTNNAC 1 cut(s) 337
Hpy188I TCNGA 2 cut(s) 308, 354
Hpy188III TCNNGA 2 cut(s) 40, 445
Hpy8I GTNNAC 1 cut(s) 337
Hpy99I CGWCG 2 cut(s) 53, 134
HpyAV CCTTC 2 cut(s) 202, 355
HpyCH4IV ACGT 1 cut(s) 51
HpyCH4V TGCA 1 cut(s) 422
HpyF10VI GCNNNNNNNGC 1 cut(s) 18
HpyF3I CTNAG 1 cut(s) 38
HpySE526I ACGT 1 cut(s) 51
HspAI GCGC 2 cut(s) 12, 279
Ksp22I TGATCA 1 cut(s) 171
KspAI GTTAAC 1 cut(s) 337
Kzo9I GATC 4 cut(s) 5, 133, 171, 450
LmnI GCTCC 1 cut(s) 409
Lsp1109I GCAGC 2 cut(s) 30, 268
LweI GCATC 2 cut(s) 104, 492
MaeII ACGT 1 cut(s) 51
MalI GATC 4 cut(s) 7, 135, 173, 452
MboI GATC 4 cut(s) 5, 133, 171, 450
MboII GAAGA 3 cut(s) 370, 460, 482
MflI RGATCY 1 cut(s) 5
MmeI TCCRAC 1 cut(s) 331
MnlI CCTC 4 cut(s) 35, 272, 348, 471
MseI TTAA 1 cut(s) 336
MspI CCGG 2 cut(s) 125, 398
MspR9I CCNGG 1 cut(s) 387
Mva1269I GAATGC 1 cut(s) 440
MvaI CCWGG 1 cut(s) 387
MvnI CGCG 1 cut(s) 233
MwoI GCNNNNNNNGC 1 cut(s) 18
NdeII GATC 4 cut(s) 5, 133, 171, 450
PcsI WCGNNNNNNNCGW 1 cut(s) 104
PctI GAATGC 1 cut(s) 440
PfeI GAWTC 3 cut(s) 100, 157, 214
PflFI GACNNNGTC 1 cut(s) 118
PkrI GCNGC 2 cut(s) 20, 283
Ple19I CGATCG 1 cut(s) 136
Psp6I CCWGG 1 cut(s) 385
PspFI CCCAGC 1 cut(s) 59
PspGI CCWGG 1 cut(s) 385
PspPI GGNCC 2 cut(s) 62, 259
PsuI RGATCY 1 cut(s) 5
PsyI GACNNNGTC 1 cut(s) 118
PvuI CGATCG 1 cut(s) 136
SaqAI TTAA 1 cut(s) 336
SatI GCNGC 2 cut(s) 19, 282
Sau3AI GATC 4 cut(s) 5, 133, 171, 450
Sau96I GGNCC 2 cut(s) 62, 259
ScrFI CCNGG 1 cut(s) 387
SetI ASST 5 cut(s) 23, 54, 194, 240, 313
SfaNI GCATC 2 cut(s) 104, 492
SinI GGWCC 1 cut(s) 259
StyD4I CCNGG 1 cut(s) 385
TaiI ACGT 1 cut(s) 54
TaqI TCGA 5 cut(s) 48, 98, 103, 444, 493
TfiI GAWTC 3 cut(s) 100, 157, 214
Tru1I TTAA 1 cut(s) 336
Tru9I TTAA 1 cut(s) 336
TseI GCWGC 2 cut(s) 18, 281
TspDTI ATGAA 1 cut(s) 309
TspGWI ACGGA 1 cut(s) 476
Tth111I GACNNNGTC 1 cut(s) 118
VpaK11BI GGWCC 1 cut(s) 259
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.