Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004056.1

Orthogroup ID

OG0013934

Physical Location & Seq

Genomic Coordinates Forward (+)

9964 .. 11654

Gene Structure 1691 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004056.1_g000003.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 516 bp

atgggatctggtgctggaagtttcctcaaagttctccttaaaaacttcgatgttcttgctgggcccgtggttagtttggtttacccactgtatgcctcaattcgggctatagagaccaaatctccaactgatgaccgccaatggcttacgtattggattctctattctatgattacactcattgagctcacctttgccaaacttattgagtggatcccagtctggtcacatgccaagctgatcatgacttgttggttggtcatcccatacttcagtggtgctgcatatgtctatgaacactatgtcaggccgtttttcctcaacccacagacaatcaacatttggtacgttccaaagaagaaggatgtcttaagtaagccggatgatattctaacagatgcagagaagtacattgaagagaatggtactgaagcatttgagaaactcattcacaggtctgacaagtcccaaaggagtggaggattcatctttgatgatgatcataagtactactga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0006950 GO:0006970 GO:0006972 GO:0008150 GO:0009266 GO:0009409 GO:0009414 GO:0009415 GO:0009628 GO:0009651 GO:0009719 GO:0009725 GO:0009737 GO:0010033 GO:0010035 GO:0033993 GO:0042221 GO:0042538 GO:0050896 GO:0097305 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TB2_DP1_HVA22

Protein Analysis

171

Amino Acids

19.89

Weight (kDa)

6.07

Isoelectric Point (pI)

46.04

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013934)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G74520 AT1G74520
fragaria_vesca	FvH4_5g15180
malus_domestica	MD00G1186100.v1.1 MD06G1191500.v1.1 MD14G1197900.v1.1
prunus_persica	Prupe.5G190000_v2.0.a1 Prupe.5G190000_v2.0.a1
pyrus_communis	pycom06g16960
rosa_chinensis	RchiOBHm_Chr7g0180981
rosa_multiflora	Rmu_sc0004056.1_g000003
rosa_roxburghii	Rroxscaffold_3G00272360
rosa_rugosa	Rorug06G0438100 Rorug06G0438200
rosa_samantha	Rh7CG040700 Rh7DG039100
rosa_wichuraiana	Rw7G003250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	136
AclWI	GGATC	3 cut(s)	13, 208, 221
AcuI	CTGAAG	2 cut(s)	256, 450
AfaI	GTAC	4 cut(s)	347, 410, 427, 509
AfiI	CCNNNNNNNGG	1 cut(s)	102
AflII	CTTAAG	1 cut(s)	370
AgsI	TTSAA	1 cut(s)	416
AluBI	AGCT	2 cut(s)	187, 238
AluI	AGCT	2 cut(s)	187, 238
Alw21I	GWGCWC	1 cut(s)	189
Alw26I	GTCTC	1 cut(s)	107
AlwI	GGATC	3 cut(s)	13, 208, 221
AoxI	GGCC	2 cut(s)	62, 308
ApaI	GGGCCC	1 cut(s)	66
ApeKI	GCWGC	1 cut(s)	281
AspS9I	GGNCC	2 cut(s)	62, 63
AsuHPI	GGTGA	1 cut(s)	181
BaeGI	GKGCMC	1 cut(s)	66
BamHI	GGATCC	1 cut(s)	213
BanII	GRGCYC	2 cut(s)	66, 189
Bbv12I	GWGCWC	1 cut(s)	189
BbvI	GCAGC	1 cut(s)	268
BceAI	ACGGC	1 cut(s)	295
BcgI	CGANNNNNNTGC	2 cut(s)	38, 72
BclI	TGATCA	2 cut(s)	240, 499
BcoDI	GTCTC	1 cut(s)	107
BfmI	CTRYAG	1 cut(s)	108
BfrI	CTTAAG	1 cut(s)	370
BisI	GCNGC	1 cut(s)	282
BlsI	GCNGC	1 cut(s)	283
BmcAI	AGTACT	1 cut(s)	509
BmgT120I	GGNCC	2 cut(s)	62, 63
BmiI	GGNNCC	2 cut(s)	64, 215
BmrI	ACTGGG	1 cut(s)	212
BmsI	GCATC	1 cut(s)	388
BmuI	ACTGGG	1 cut(s)	212
BsaAI	YACGTR	1 cut(s)	150
BsaBI	GATNNNNATC	1 cut(s)	498
BsaI	GGTCTC	1 cut(s)	107
BsaJI	CCNNGG	1 cut(s)	66
BsaXI	ACNNNNNCTCC	2 cut(s)	106, 136
Bsc4I	CCNNNNNNNGG	1 cut(s)	102
Bse1I	ACTGG	1 cut(s)	218
Bse8I	GATNNNNATC	1 cut(s)	498
BseDI	CCNNGG	1 cut(s)	66
BseGI	GGATG	3 cut(s)	261, 370, 388
BseJI	GATNNNNATC	1 cut(s)	498
BseLI	CCNNNNNNNGG	1 cut(s)	102
BseNI	ACTGG	1 cut(s)	218
BseSI	GKGCMC	1 cut(s)	66
BseXI	GCAGC	1 cut(s)	268
BseYI	CCCAGC	1 cut(s)	59
BshFI	GGCC	2 cut(s)	64, 310
BsiHKAI	GWGCWC	1 cut(s)	189
BsiSI	CCGG	1 cut(s)	380
BslFI	GGGAC	1 cut(s)	451
BslI	CCNNNNNNNGG	1 cut(s)	102
BsmAI	GTCTC	1 cut(s)	107
BsmFI	GGGAC	1 cut(s)	451
BsnI	GGCC	2 cut(s)	64, 310
Bso31I	GGTCTC	1 cut(s)	107
Bsp120I	GGGCCC	1 cut(s)	62
Bsp1286I	GDGCHC	2 cut(s)	66, 189
Bsp143I	GATC	4 cut(s)	5, 213, 240, 499
BspACI	CCGC	1 cut(s)	136
BspANI	GGCC	2 cut(s)	64, 310
BspHI	TCATGA	1 cut(s)	243
BspLI	GGNNCC	2 cut(s)	64, 215
BspPI	GGATC	3 cut(s)	13, 208, 221
BspTI	CTTAAG	1 cut(s)	370
BspTNI	GGTCTC	1 cut(s)	107
BsrI	ACTGG	1 cut(s)	218
BssECI	CCNNGG	1 cut(s)	66
BssMI	GATC	4 cut(s)	5, 213, 240, 499
Bst4CI	ACNGT	1 cut(s)	90
Bst6I	CTCTTC	1 cut(s)	411
BstAFI	CTTAAG	1 cut(s)	370
BstBAI	YACGTR	1 cut(s)	150
BstDSI	CCRYGG	1 cut(s)	66
BstF5I	GGATG	3 cut(s)	261, 370, 388
BstKTI	GATC	4 cut(s)	8, 216, 243, 502
BstMAI	GTCTC	1 cut(s)	107
BstMBI	GATC	4 cut(s)	5, 213, 240, 499
BstNSI	RCATGY	1 cut(s)	233
BstSFI	CTRYAG	1 cut(s)	108
BstSLI	GKGCMC	1 cut(s)	66
BstSNI	TACGTA	1 cut(s)	150
BstV1I	GCAGC	1 cut(s)	268
BstX2I	RGATCY	2 cut(s)	5, 213
BstXI	CCANNNNNNTGG	1 cut(s)	476
BstYI	RGATCY	2 cut(s)	5, 213
BsuRI	GGCC	2 cut(s)	64, 310
BtgI	CCRYGG	1 cut(s)	66
BtsCI	GGATG	3 cut(s)	261, 370, 388
BtsIMutI	CAGTG	2 cut(s)	86, 280
CciI	TCATGA	1 cut(s)	243
Cfr13I	GGNCC	2 cut(s)	62, 63
Csp6I	GTAC	4 cut(s)	346, 409, 426, 508
CviAII	CATG	2 cut(s)	230, 244
CviJI	RGCY	7 cut(s)	64, 107, 145, 187, 238, 310, 379
CviKI_1	RGCY	7 cut(s)	64, 107, 145, 187, 238, 310, 379
CviQI	GTAC	4 cut(s)	346, 409, 426, 508
DpnI	GATC	4 cut(s)	7, 215, 242, 501
DpnII	GATC	4 cut(s)	5, 213, 240, 499
Eam1104I	CTCTTC	1 cut(s)	411
EarI	CTCTTC	1 cut(s)	411
Ecl136II	GAGCTC	1 cut(s)	187
Eco105I	TACGTA	1 cut(s)	150
Eco24I	GRGCYC	2 cut(s)	66, 189
Eco31I	GGTCTC	1 cut(s)	107
Eco53kI	GAGCTC	1 cut(s)	187
Eco57I	CTGAAG	2 cut(s)	256, 450
EcoICRI	GAGCTC	1 cut(s)	187
EcoT38I	GRGCYC	2 cut(s)	66, 189
FaeI	CATG	2 cut(s)	233, 247
FalI	AAGNNNNNCTT	4 cut(s)	21, 53, 353, 385
FaqI	GGGAC	1 cut(s)	451
FatI	CATG	2 cut(s)	229, 243
FauNDI	CATATG	1 cut(s)	286
FbaI	TGATCA	2 cut(s)	240, 499
Fnu4HI	GCNGC	1 cut(s)	282
FokI	GGATG	3 cut(s)	248, 377, 395
FriOI	GRGCYC	2 cut(s)	66, 189
Fsp4HI	GCNGC	1 cut(s)	282
GluI	GCNGC	1 cut(s)	282
GsaI	CCCAGC	1 cut(s)	63
HaeIII	GGCC	2 cut(s)	64, 310
HapII	CCGG	1 cut(s)	380
Hin1II	CATG	2 cut(s)	233, 247
HinfI	GANTC	2 cut(s)	157, 483
HpaII	CCGG	1 cut(s)	380
HphI	GGTGA	1 cut(s)	181
Hpy166II	GTNNAC	1 cut(s)	82
Hpy188I	TCNGA	1 cut(s)	460
Hpy188III	TCNNGA	1 cut(s)	244
Hpy8I	GTNNAC	1 cut(s)	82
HpyAV	CCTTC	1 cut(s)	355
HpyCH4III	ACNGT	1 cut(s)	90
HpyCH4IV	ACGT	2 cut(s)	149, 348
HpyCH4V	TGCA	2 cut(s)	284, 401
HpySE526I	ACGT	2 cut(s)	149, 348
Hsp92II	CATG	2 cut(s)	233, 247
Ksp22I	TGATCA	2 cut(s)	240, 499
Kzo9I	GATC	4 cut(s)	5, 213, 240, 499
LpnPI	CCDG	6 cut(s)	45, 208, 231, 292, 393, 439
Lsp1109I	GCAGC	1 cut(s)	268
LweI	GCATC	1 cut(s)	388
MaeII	ACGT	2 cut(s)	149, 348
MaeIII	GTNAC	1 cut(s)	225
MalI	GATC	4 cut(s)	7, 215, 242, 501
MboI	GATC	4 cut(s)	5, 213, 240, 499
MboII	GAAGA	2 cut(s)	370, 428
MflI	RGATCY	2 cut(s)	5, 213
MhlI	GDGCHC	2 cut(s)	66, 189
MluCI	AATT	1 cut(s)	99
MmeI	TCCRAC	1 cut(s)	149
MnlI	CCTC	4 cut(s)	35, 106, 329, 473
MseI	TTAA	2 cut(s)	39, 371
MspCI	CTTAAG	1 cut(s)	370
MspI	CCGG	1 cut(s)	380
NdeI	CATATG	1 cut(s)	286
NdeII	GATC	4 cut(s)	5, 213, 240, 499
NlaIII	CATG	2 cut(s)	233, 247
NlaIV	GGNNCC	2 cut(s)	64, 215
NmuCI	GTSAC	1 cut(s)	225
NspI	RCATGY	1 cut(s)	233
PagI	TCATGA	1 cut(s)	243
PfeI	GAWTC	2 cut(s)	157, 483
PkrI	GCNGC	1 cut(s)	283
Ppu21I	YACGTR	1 cut(s)	150
Psp124BI	GAGCTC	1 cut(s)	189
PspFI	CCCAGC	1 cut(s)	59
PspN4I	GGNNCC	2 cut(s)	64, 215
PspOMI	GGGCCC	1 cut(s)	62
PspPI	GGNCC	2 cut(s)	62, 63
PsuI	RGATCY	2 cut(s)	5, 213
RsaI	GTAC	4 cut(s)	347, 410, 427, 509
RsaNI	GTAC	4 cut(s)	346, 409, 426, 508
SacI	GAGCTC	1 cut(s)	189
SaqAI	TTAA	2 cut(s)	39, 371
SatI	GCNGC	1 cut(s)	282
Sau3AI	GATC	4 cut(s)	5, 213, 240, 499
Sau96I	GGNCC	2 cut(s)	62, 63
ScaI	AGTACT	1 cut(s)	509
SduI	GDGCHC	2 cut(s)	66, 189
SetI	ASST	6 cut(s)	152, 189, 194, 240, 351, 458
SfaNI	GCATC	1 cut(s)	388
SfcI	CTRYAG	1 cut(s)	108
SmlI	CTYRAG	1 cut(s)	370
SmoI	CTYRAG	1 cut(s)	370
SnaBI	TACGTA	1 cut(s)	150
Sse9I	AATT	1 cut(s)	99
SsiI	CCGC	1 cut(s)	136
SstI	GAGCTC	1 cut(s)	189
TaaI	ACNGT	1 cut(s)	90
TaiI	ACGT	2 cut(s)	152, 351
TaqI	TCGA	1 cut(s)	48
TasI	AATT	1 cut(s)	99
TatI	WGTACW	2 cut(s)	408, 507
TfiI	GAWTC	2 cut(s)	157, 483
Tru1I	TTAA	2 cut(s)	39, 371
Tru9I	TTAA	2 cut(s)	39, 371
TscAI	CASTG	2 cut(s)	93, 280
TseFI	GTSAC	1 cut(s)	225
TseI	GCWGC	1 cut(s)	281
Tsp45I	GTSAC	1 cut(s)	225
TspDTI	ATGAA	2 cut(s)	309, 475
TspRI	CASTG	2 cut(s)	93, 280
Vha464I	CTTAAG	1 cut(s)	370
XceI	RCATGY	1 cut(s)	233
ZrmI	AGTACT	1 cut(s)	509

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.