MD00G1186100.v1.1

HVA22-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr00
OG0013934
Physical Location & Seq
Forward (+)
44272628 .. 44274355
1728 bp
Loading structure...
UTR
Exon/CDS
Intron
MD00G1186100.v1.1.491

Sequence Viewer

Length: 366 bp
ATGATTACTCTGATTGAACTCACCTTTGCCAAAGTCATTGAGTGGATTCCAATCTGGTCGTACGCTAAGCTGATTGCGACTTGTTGGTTGGTACTCCCGTACACGAATGGTGCTGCATACGTTTATGAACATTATATCCGACCTTTCTTTCTCAACCCGCATAAAATTAACATTTGGTATGTTCCGAGGAAGAAGGATGACCCAGATGACATTTTAGTTGCTGCGGAGAAATACATTGCAGAGAACGGGACTGAAGCTTTCGAGAAGATCATCCACAGGGCTGATAACAACCAGAGGAGCGGGGGATCCGTCTATCATAGGGGATCTGTCTTTGATGAGGACCTTAAGTACTATCGAGAATATTAG

Protein Analysis

122

Amino Acids

14.32

Weight (kDa)

6.06

Isoelectric Point (pI)

34.01

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TB2_DP1_HVA22 PF03134 1 - 49 1.1e-14 TB2/DP1, HVA22 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0013934)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G74520 AT1G74520
fragaria_vesca FvH4_5g15180
malus_domestica MD00G1186100.v1.1 MD06G1191500.v1.1 MD14G1197900.v1.1
prunus_persica Prupe.5G190000_v2.0.a1 Prupe.5G190000_v2.0.a1
pyrus_communis pycom06g16960
rosa_chinensis RchiOBHm_Chr7g0180981
rosa_multiflora Rmu_sc0004056.1_g000003
rosa_roxburghii Rroxscaffold_3G00272360
rosa_rugosa Rorug06G0438100 Rorug06G0438200
rosa_samantha Rh7CG040700 Rh7DG039100
rosa_wichuraiana Rw7G003250

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 300
AciI CCGC 3 cut(s) 158, 224, 300
AclWI GGATC 3 cut(s) 300, 313, 331
AcuI CTGAAG 1 cut(s) 273
AfaI GTAC 4 cut(s) 62, 93, 101, 350
AflII CTTAAG 1 cut(s) 344
AgsI TTSAA 1 cut(s) 17
AloI GAACNNNNNNTCC 2 cut(s) 120, 152
AluBI AGCT 2 cut(s) 70, 257
AluI AGCT 2 cut(s) 70, 257
AlwI GGATC 3 cut(s) 300, 313, 331
ApeKI GCWGC 2 cut(s) 113, 221
AspS9I GGNCC 1 cut(s) 340
AsuHPI GGTGA 1 cut(s) 13
AvaII GGWCC 1 cut(s) 340
BaeI ACNNNNGTAYC 2 cut(s) 83, 116
BamHI GGATCC 1 cut(s) 305
BbvI GCAGC 2 cut(s) 100, 208
BfrI CTTAAG 1 cut(s) 344
BisI GCNGC 2 cut(s) 114, 222
BlpI GCTNAGC 1 cut(s) 66
BlsI GCNGC 2 cut(s) 115, 223
BmcAI AGTACT 1 cut(s) 350
Bme18I GGWCC 1 cut(s) 340
BmgT120I GGNCC 1 cut(s) 340
BmiI GGNNCC 1 cut(s) 307
Bpu1102I GCTNAGC 1 cut(s) 66
BsaBI GATNNNNATC 1 cut(s) 50
BsaJI CCNNGG 1 cut(s) 185
Bse3DI GCAATG 1 cut(s) 234
Bse8I GATNNNNATC 1 cut(s) 50
BseDI CCNNGG 1 cut(s) 185
BseGI GGATG 2 cut(s) 202, 270
BseJI GATNNNNATC 1 cut(s) 50
BseMI GCAATG 1 cut(s) 234
BseRI GAGGAG 1 cut(s) 310
BseXI GCAGC 2 cut(s) 100, 208
BsiWI CGTACG 1 cut(s) 60
BslFI GGGAC 1 cut(s) 262
BsmFI GGGAC 1 cut(s) 262
Bsp143I GATC 3 cut(s) 267, 305, 323
Bsp1720I GCTNAGC 1 cut(s) 66
BspACI CCGC 3 cut(s) 158, 224, 300
BspLI GGNNCC 1 cut(s) 307
BspPI GGATC 3 cut(s) 300, 313, 331
BspTI CTTAAG 1 cut(s) 344
BsrBI CCGCTC 1 cut(s) 300
BsrDI GCAATG 1 cut(s) 234
BssECI CCNNGG 1 cut(s) 185
BssMI GATC 3 cut(s) 267, 305, 323
BstAFI CTTAAG 1 cut(s) 344
BstDEI CTNAG 1 cut(s) 66
BstF5I GGATG 2 cut(s) 202, 270
BstKTI GATC 3 cut(s) 270, 308, 326
BstMBI GATC 3 cut(s) 267, 305, 323
BstV1I GCAGC 2 cut(s) 100, 208
BstX2I RGATCY 2 cut(s) 305, 323
BstYI RGATCY 2 cut(s) 305, 323
BtsCI GGATG 2 cut(s) 202, 270
Cfr13I GGNCC 1 cut(s) 340
Csp6I GTAC 4 cut(s) 61, 92, 100, 349
CviJI RGCY 3 cut(s) 70, 257, 281
CviKI_1 RGCY 3 cut(s) 70, 257, 281
CviQI GTAC 4 cut(s) 61, 92, 100, 349
DdeI CTNAG 1 cut(s) 66
DpnI GATC 3 cut(s) 269, 307, 325
DpnII GATC 3 cut(s) 267, 305, 323
Eco47I GGWCC 1 cut(s) 340
Eco57I CTGAAG 1 cut(s) 273
EcoO109I RGGNCCY 1 cut(s) 340
FaiI YATR 6 cut(s) 118, 126, 135, 162, 180, 318
FaqI GGGAC 1 cut(s) 262
FauI CCCGC 2 cut(s) 165, 293
Fnu4HI GCNGC 2 cut(s) 114, 222
FokI GGATG 2 cut(s) 209, 257
Fsp4HI GCNGC 2 cut(s) 114, 222
GluI GCNGC 2 cut(s) 114, 222
HindIII AAGCTT 1 cut(s) 255
HinfI GANTC 1 cut(s) 46
HphI GGTGA 1 cut(s) 13
Hpy166II GTNNAC 1 cut(s) 102
Hpy188I TCNGA 3 cut(s) 12, 140, 186
Hpy188III TCNNGA 2 cut(s) 262, 356
Hpy8I GTNNAC 1 cut(s) 102
HpyAV CCTTC 1 cut(s) 187
HpyCH4IV ACGT 1 cut(s) 120
HpyCH4V TGCA 2 cut(s) 116, 239
HpyF3I CTNAG 1 cut(s) 66
HpySE526I ACGT 1 cut(s) 120
Kzo9I GATC 3 cut(s) 267, 305, 323
LmnI GCTCC 1 cut(s) 297
LpnPI CCDG 4 cut(s) 40, 216, 262, 305
Lsp1109I GCAGC 2 cut(s) 100, 208
MaeII ACGT 1 cut(s) 120
MalI GATC 3 cut(s) 269, 307, 325
MbiI CCGCTC 1 cut(s) 300
MboI GATC 3 cut(s) 267, 305, 323
MboII GAAGA 2 cut(s) 202, 277
MflI RGATCY 2 cut(s) 305, 323
MluCI AATT 1 cut(s) 165
MmeI TCCRAC 1 cut(s) 163
MnlI CCTC 3 cut(s) 180, 288, 331
MseI TTAA 2 cut(s) 168, 345
MspCI CTTAAG 1 cut(s) 344
NdeII GATC 3 cut(s) 267, 305, 323
NlaIV GGNNCC 1 cut(s) 307
PfeI GAWTC 1 cut(s) 46
Pfl23II CGTACG 1 cut(s) 60
PkrI GCNGC 2 cut(s) 115, 223
PpuMI RGGWCCY 1 cut(s) 340
Psp5II RGGWCCY 1 cut(s) 340
PspLI CGTACG 1 cut(s) 60
PspN4I GGNNCC 1 cut(s) 307
PspPI GGNCC 1 cut(s) 340
PspPPI RGGWCCY 1 cut(s) 340
PsuI RGATCY 2 cut(s) 305, 323
RsaI GTAC 4 cut(s) 62, 93, 101, 350
RsaNI GTAC 4 cut(s) 61, 92, 100, 349
SaqAI TTAA 2 cut(s) 168, 345
SatI GCNGC 2 cut(s) 114, 222
Sau3AI GATC 3 cut(s) 267, 305, 323
Sau96I GGNCC 1 cut(s) 340
ScaI AGTACT 1 cut(s) 350
SetI ASST 6 cut(s) 26, 72, 123, 145, 259, 345
SinI GGWCC 1 cut(s) 340
SmlI CTYRAG 1 cut(s) 344
SmoI CTYRAG 1 cut(s) 344
Sse9I AATT 1 cut(s) 165
SsiI CCGC 3 cut(s) 158, 224, 300
SspI AATATT 1 cut(s) 362
TaiI ACGT 1 cut(s) 123
TaqI TCGA 2 cut(s) 261, 355
TasI AATT 1 cut(s) 165
TatI WGTACW 1 cut(s) 348
TfiI GAWTC 1 cut(s) 46
Tru1I TTAA 2 cut(s) 168, 345
Tru9I TTAA 2 cut(s) 168, 345
TseI GCWGC 2 cut(s) 113, 221
TspDTI ATGAA 1 cut(s) 141
TspGWI ACGGA 1 cut(s) 298
Vha464I CTTAAG 1 cut(s) 344
VpaK11BI GGWCC 1 cut(s) 340
ZrmI AGTACT 1 cut(s) 350
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.