AT1G74880

Cyanobacterial and plant NDH-1 subunit O

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0012164
Physical Location & Seq
Reverse (-)
28129828 .. 28131077
1250 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G74880.1

Sequence Viewer

Length: 477 bp
ATGGCTTTCTCTGCGACTGTGTCTCAGCTTTCTTCTCTTTCAACCATCTCCTCTTCATTACCAATTTCTTCTAGAAGACTCCCTCATCGATCTCTTCCTCAATTCACAGTCAAAGCAGAAGCAGAGAAAGAGAAACAGAGCACACAGGGCAAGTCTGATGGGGAAGCATCACCAGCTGCAACCAAAACCCCTAAAACCCTCCCCAAGAAACCGGTTTACTCGATGAAGAAGGGCCAAATCGTTCGTGTGGAAAAAGAGAAGTACCTCAACAGCATCAATTACTTATCAGTTGGACATCCTCCTTTCTACAAAGGACTTGATTACATATACGAAGATCGCGGCGAGGTCTTGGACCTTCGTGTCTTTGAGACAGGAGAGTATGCACTTGTTGGATGGGTTGGTATCCCCACCGCACCAGCTTGGCTCCCAACAGATATGCTCATCAAGTGTGAGAAACTTGTTTACGAGCGAATGTAG

Protein Analysis

158

Amino Acids

17.66

Weight (kDa)

9.23

Isoelectric Point (pI)

40.9

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NdhO PF11910 75 - 148 6.6e-22 Cyanobacterial and plant NDH-1 subunit O
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0012164)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G74880
fragaria_vesca FvH4_1g24330 FvH4_1g24330 FvH4_1g24330
malus_domestica MD01G1003600.v1.1
prunus_persica Prupe.6G157800_v2.0.a1
pyrus_communis pycom01g02350
rosa_chinensis RchiOBHm_Chr2g0120841
rosa_laevigata RLG00000018594
rosa_multiflora Rmu_sc0000621.1_g000009
rosa_roxburghii Rroxscaffold_2G00122790
rosa_rugosa Rorug02G0232000 Rorug02G0232000 Rorug02G0232100
rosa_samantha Rh2AG288600 Rh2BG299600 Rh2CG277600 Rh2DG313700
rosa_wichuraiana Rw2G023120

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 359
AccII CGCG 1 cut(s) 339
AciI CCGC 2 cut(s) 339, 411
AfaI GTAC 1 cut(s) 263
AgeI ACCGGT 1 cut(s) 211
AgsI TTSAA 1 cut(s) 42
AluBI AGCT 3 cut(s) 28, 176, 419
AluI AGCT 3 cut(s) 28, 176, 419
Alw21I GWGCWC 1 cut(s) 143
Alw26I GTCTC 2 cut(s) 27, 362
AoxI GGCC 1 cut(s) 232
ApeKI GCWGC 1 cut(s) 176
AsiGI ACCGGT 1 cut(s) 211
AspS9I GGNCC 2 cut(s) 232, 352
AsuHPI GGTGA 1 cut(s) 162
AvaII GGWCC 1 cut(s) 352
BbsI GAAGAC 1 cut(s) 82
Bbv12I GWGCWC 1 cut(s) 143
BbvI GCAGC 1 cut(s) 163
BccI CCATC 3 cut(s) 53, 152, 387
BciVI GTATCC 1 cut(s) 413
BcoDI GTCTC 2 cut(s) 27, 362
BfaI CTAG 1 cut(s) 72
BfuI GTATCC 1 cut(s) 413
BisI GCNGC 2 cut(s) 177, 340
BlsI GCNGC 2 cut(s) 178, 341
Bme18I GGWCC 1 cut(s) 352
BmgT120I GGNCC 2 cut(s) 232, 352
BmiI GGNNCC 1 cut(s) 425
BmsI GCATC 2 cut(s) 176, 282
BpiI GAAGAC 1 cut(s) 82
Bsa29I ATCGAT 1 cut(s) 88
BsaWI WCCGGW 1 cut(s) 211
Bse118I RCCGGY 1 cut(s) 211
BseCI ATCGAT 1 cut(s) 88
BseGI GGATG 2 cut(s) 295, 398
BseMII CTCAG 1 cut(s) 38
BseRI GAGGAG 1 cut(s) 40
BseXI GCAGC 1 cut(s) 163
Bsh1236I CGCG 1 cut(s) 339
BshFI GGCC 1 cut(s) 234
BshTI ACCGGT 1 cut(s) 211
BshVI ATCGAT 1 cut(s) 88
BsiHKAI GWGCWC 1 cut(s) 143
BsiSI CCGG 1 cut(s) 212
BsmAI GTCTC 2 cut(s) 27, 362
BsnI GGCC 1 cut(s) 234
Bsp1286I GDGCHC 1 cut(s) 143
Bsp143I GATC 2 cut(s) 89, 334
BspACI CCGC 2 cut(s) 339, 411
BspANI GGCC 1 cut(s) 234
BspCNI CTCAG 1 cut(s) 37
BspDI ATCGAT 1 cut(s) 88
BspFNI CGCG 1 cut(s) 339
BspLI GGNNCC 1 cut(s) 425
BsrFI RCCGGY 1 cut(s) 211
BssAI RCCGGY 1 cut(s) 211
BssMI GATC 2 cut(s) 89, 334
Bst4CI ACNGT 2 cut(s) 19, 109
Bst6I CTCTTC 2 cut(s) 58, 99
BstDEI CTNAG 1 cut(s) 24
BstF5I GGATG 2 cut(s) 295, 398
BstFNI CGCG 1 cut(s) 339
BstKTI GATC 2 cut(s) 92, 337
BstMAI GTCTC 2 cut(s) 27, 362
BstMBI GATC 2 cut(s) 89, 334
BstMWI GCNNNNNNNGC 3 cut(s) 11, 147, 173
BstUI CGCG 1 cut(s) 339
BstV1I GCAGC 1 cut(s) 163
BstV2I GAAGAC 1 cut(s) 82
Bsu15I ATCGAT 1 cut(s) 88
BsuI GTATCC 1 cut(s) 413
BsuRI GGCC 1 cut(s) 234
BsuTUI ATCGAT 1 cut(s) 88
BtsCI GGATG 2 cut(s) 295, 398
Cfr10I RCCGGY 1 cut(s) 211
Cfr13I GGNCC 2 cut(s) 232, 352
ClaI ATCGAT 1 cut(s) 88
Csp6I GTAC 1 cut(s) 262
CspAI ACCGGT 1 cut(s) 211
CviJI RGCY 6 cut(s) 5, 28, 176, 234, 419, 424
CviKI_1 RGCY 6 cut(s) 5, 28, 176, 234, 419, 424
CviQI GTAC 1 cut(s) 262
DdeI CTNAG 1 cut(s) 24
DpnI GATC 2 cut(s) 91, 336
DpnII GATC 2 cut(s) 89, 334
DrdI GACNNNNNNGTC 1 cut(s) 359
DseDI GACNNNNNNGTC 1 cut(s) 359
Eam1104I CTCTTC 2 cut(s) 58, 99
EarI CTCTTC 2 cut(s) 58, 99
Eco47I GGWCC 1 cut(s) 352
FaiI YATR 4 cut(s) 326, 328, 381, 437
Fnu4HI GCNGC 2 cut(s) 177, 340
FokI GGATG 2 cut(s) 282, 405
Fsp4HI GCNGC 2 cut(s) 177, 340
FspBI CTAG 1 cut(s) 72
GluI GCNGC 2 cut(s) 177, 340
HaeIII GGCC 1 cut(s) 234
HapII CCGG 1 cut(s) 212
HinfI GANTC 1 cut(s) 78
HpaII CCGG 1 cut(s) 212
HphI GGTGA 1 cut(s) 162
Hpy166II GTNNAC 2 cut(s) 217, 463
Hpy188I TCNGA 1 cut(s) 157
Hpy188III TCNNGA 1 cut(s) 72
Hpy8I GTNNAC 2 cut(s) 217, 463
HpyAV CCTTC 2 cut(s) 223, 365
HpyCH4III ACNGT 2 cut(s) 19, 109
HpyCH4V TGCA 2 cut(s) 179, 383
HpyF10VI GCNNNNNNNGC 3 cut(s) 11, 147, 173
HpyF3I CTNAG 1 cut(s) 24
Kzo9I GATC 2 cut(s) 89, 334
LmnI GCTCC 1 cut(s) 429
LpnPI CCDG 5 cut(s) 131, 186, 225, 357, 429
Lsp1109I GCAGC 1 cut(s) 163
LweI GCATC 2 cut(s) 176, 282
MaeI CTAG 1 cut(s) 72
MalI GATC 2 cut(s) 91, 336
MboI GATC 2 cut(s) 89, 334
MboII GAAGA 7 cut(s) 24, 45, 60, 86, 87, 238, 344
MhlI GDGCHC 1 cut(s) 143
MluCI AATT 3 cut(s) 63, 101, 277
MlyI GAGTC 1 cut(s) 72
MmeI TCCRAC 2 cut(s) 271, 370
MnlI CCTC 7 cut(s) 61, 93, 108, 209, 275, 309, 337
MspA1I CMGCKG 1 cut(s) 176
MspI CCGG 1 cut(s) 212
MvnI CGCG 1 cut(s) 339
MwoI GCNNNNNNNGC 3 cut(s) 11, 147, 173
NdeII GATC 2 cut(s) 89, 334
NlaIV GGNNCC 1 cut(s) 425
PflFI GACNNNGTC 1 cut(s) 19
PinAI ACCGGT 1 cut(s) 211
PkrI GCNGC 2 cut(s) 178, 341
PleI GAGTC 1 cut(s) 72
PpsI GAGTC 1 cut(s) 72
PspN4I GGNNCC 1 cut(s) 425
PspPI GGNCC 2 cut(s) 232, 352
PsyI GACNNNGTC 1 cut(s) 19
PvuII CAGCTG 1 cut(s) 176
RsaI GTAC 1 cut(s) 263
RsaNI GTAC 1 cut(s) 262
SatI GCNGC 2 cut(s) 177, 340
Sau3AI GATC 2 cut(s) 89, 334
Sau96I GGNCC 2 cut(s) 232, 352
SchI GAGTC 1 cut(s) 72
SduI GDGCHC 1 cut(s) 143
SetI ASST 6 cut(s) 30, 178, 267, 348, 357, 421
SfaNI GCATC 2 cut(s) 176, 282
SinI GGWCC 1 cut(s) 352
Sse9I AATT 3 cut(s) 63, 101, 277
SsiI CCGC 2 cut(s) 339, 411
SspMI CTAG 1 cut(s) 72
TaaI ACNGT 2 cut(s) 19, 109
TaqI TCGA 2 cut(s) 88, 221
TasI AATT 3 cut(s) 63, 101, 277
TauI GCSGC 1 cut(s) 342
TseI GCWGC 1 cut(s) 176
TspDTI ATGAA 2 cut(s) 45, 239
Tth111I GACNNNGTC 1 cut(s) 19
VpaK11BI GGWCC 1 cut(s) 352
XbaI TCTAGA 1 cut(s) 71
XspI CTAG 1 cut(s) 72
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.