Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0012164

Physical Location & Seq

Genomic Coordinates Reverse (-)

38670592 .. 38673811

Gene Structure 3220 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG313700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 402 bp

ATGGCTCTCTCTCCAACTCTGTCTCACAACTCATTCTCATCCTTCTCTCCCTTCCCACAGACTTTGAGAAGAAGCCCTCTTCACCTTTTGCCCATTAGAGCTGTAAAAGCTGCTGCAGAACCAGAAAAGGAGAAACTCAAAGAGGACAAAACTCCCAAAGAGTCTAGTTCCAATGCTCAGCCTTCAAGTCCAAGCAAAGGCACAGCTACTCTTAAGCCTCCAAAGAAGCCTGTCTATTCCATGAAGAAGGGTCAGATTGTGAGGGTGGACAAAGAGAAGTACCTAAATAGTGTCAATTATCTATCTGTTGGACATCCACCTTATTACAAAGGGCTGGACTATATTTATGAAGACCGTGGTGAGGTAAGTAGCCTCTTCAAACTTCTTCACATAACCAACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0008150 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0009987 GO:0010257 GO:0010258 GO:0010598 GO:0016020 GO:0016043 GO:0022607 GO:0031976 GO:0031984 GO:0032991 GO:0034357 GO:0034622 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044422 GO:0044424 GO:0044425 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0055035 GO:0065003 GO:0071840 GO:0098796

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NdhO

Protein Analysis

133

Amino Acids

14.89

Weight (kDa)

9.73

Isoelectric Point (pI)

52.44

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NdhO	PF11910	81 - 123	9.5e-11	Cyanobacterial and plant NDH-1 subunit O

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0012164)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G74880
fragaria_vesca	FvH4_1g24330 FvH4_1g24330 FvH4_1g24330
malus_domestica	MD01G1003600.v1.1
prunus_persica	Prupe.6G157800_v2.0.a1
pyrus_communis	pycom01g02350
rosa_chinensis	RchiOBHm_Chr2g0120841
rosa_laevigata	RLG00000018594
rosa_multiflora	Rmu_sc0000621.1_g000009
rosa_roxburghii	Rroxscaffold_2G00122790
rosa_rugosa	Rorug02G0232000 Rorug02G0232000 Rorug02G0232100
rosa_samantha	Rh2AG288600 Rh2BG299600 Rh2CG277600 Rh2DG313700
rosa_wichuraiana	Rw2G023120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AfaI	GTAC	1 cut(s)	281
AfiI	CCNNNNNNNGG	2 cut(s)	197, 361
AflII	CTTAAG	1 cut(s)	212
AgsI	TTSAA	2 cut(s)	186, 379
AluBI	AGCT	3 cut(s)	101, 110, 206
AluI	AGCT	3 cut(s)	101, 110, 206
Alw26I	GTCTC	1 cut(s)	27
ApeKI	GCWGC	2 cut(s)	110, 113
AsuHPI	GGTGA	2 cut(s)	74, 371
BbsI	GAAGAC	1 cut(s)	357
BbvI	GCAGC	2 cut(s)	97, 100
BcoDI	GTCTC	1 cut(s)	27
BfaI	CTAG	2 cut(s)	165, 400
BfmI	CTRYAG	1 cut(s)	114
BfrI	CTTAAG	1 cut(s)	212
BisI	GCNGC	2 cut(s)	111, 114
BlpI	GCTNAGC	1 cut(s)	177
BlsI	GCNGC	2 cut(s)	112, 115
BpiI	GAAGAC	1 cut(s)	357
Bpu1102I	GCTNAGC	1 cut(s)	177
BsaJI	CCNNGG	1 cut(s)	355
Bsc4I	CCNNNNNNNGG	2 cut(s)	197, 361
BseDI	CCNNGG	1 cut(s)	355
BseGI	GGATG	2 cut(s)	38, 313
BseLI	CCNNNNNNNGG	2 cut(s)	197, 361
BseMII	CTCAG	1 cut(s)	191
BseXI	GCAGC	2 cut(s)	97, 100
BslI	CCNNNNNNNGG	2 cut(s)	197, 361
BsmAI	GTCTC	1 cut(s)	27
Bsp1720I	GCTNAGC	1 cut(s)	177
BspCNI	CTCAG	1 cut(s)	190
BspMAI	CTGCAG	1 cut(s)	118
BspTI	CTTAAG	1 cut(s)	212
BssECI	CCNNGG	1 cut(s)	355
Bst4CI	ACNGT	1 cut(s)	356
Bst6I	CTCTTC	2 cut(s)	84, 380
BstAFI	CTTAAG	1 cut(s)	212
BstDEI	CTNAG	1 cut(s)	177
BstDSI	CCRYGG	1 cut(s)	355
BstF5I	GGATG	2 cut(s)	38, 313
BstMAI	GTCTC	1 cut(s)	27
BstMWI	GCNNNNNNNGC	1 cut(s)	107
BstSFI	CTRYAG	1 cut(s)	114
BstV1I	GCAGC	2 cut(s)	97, 100
BstV2I	GAAGAC	1 cut(s)	357
BtgI	CCRYGG	1 cut(s)	355
BtsCI	GGATG	2 cut(s)	38, 313
Csp6I	GTAC	1 cut(s)	280
CspCI	CAANNNNNGTGG	2 cut(s)	45, 80
CviAII	CATG	1 cut(s)	241
CviQI	GTAC	1 cut(s)	280
DdeI	CTNAG	1 cut(s)	177
Eam1104I	CTCTTC	2 cut(s)	84, 380
EarI	CTCTTC	2 cut(s)	84, 380
FaeI	CATG	1 cut(s)	244
FaiI	YATR	4 cut(s)	242, 342, 348, 392
FatI	CATG	1 cut(s)	240
Fnu4HI	GCNGC	2 cut(s)	111, 114
FokI	GGATG	2 cut(s)	25, 300
Fsp4HI	GCNGC	2 cut(s)	111, 114
FspBI	CTAG	2 cut(s)	165, 400
GluI	GCNGC	2 cut(s)	111, 114
Hin1II	CATG	1 cut(s)	244
HinfI	GANTC	1 cut(s)	161
HphI	GGTGA	2 cut(s)	74, 371
Hpy166II	GTNNAC	1 cut(s)	268
Hpy188I	TCNGA	1 cut(s)	255
Hpy8I	GTNNAC	1 cut(s)	268
HpyAV	CCTTC	4 cut(s)	52, 61, 192, 241
HpyCH4III	ACNGT	1 cut(s)	356
HpyCH4V	TGCA	1 cut(s)	116
HpyF10VI	GCNNNNNNNGC	1 cut(s)	107
HpyF3I	CTNAG	1 cut(s)	177
Hsp92II	CATG	1 cut(s)	244
LpnPI	CCDG	3 cut(s)	135, 243, 320
Lsp1109I	GCAGC	2 cut(s)	97, 100
MaeI	CTAG	2 cut(s)	165, 400
MboII	GAAGA	6 cut(s)	71, 81, 256, 362, 367, 377
MluCI	AATT	1 cut(s)	295
MlyI	GAGTC	1 cut(s)	170
MmeI	TCCRAC	2 cut(s)	38, 289
MnlI	CCTC	6 cut(s)	87, 136, 228, 255, 355, 383
MseI	TTAA	1 cut(s)	213
MspCI	CTTAAG	1 cut(s)	212
MwoI	GCNNNNNNNGC	1 cut(s)	107
NlaIII	CATG	1 cut(s)	244
PkrI	GCNGC	2 cut(s)	112, 115
PleI	GAGTC	1 cut(s)	169
PpsI	GAGTC	1 cut(s)	169
PstI	CTGCAG	1 cut(s)	118
RsaI	GTAC	1 cut(s)	281
RsaNI	GTAC	1 cut(s)	280
SaqAI	TTAA	1 cut(s)	213
SatI	GCNGC	2 cut(s)	111, 114
SchI	GAGTC	1 cut(s)	170
SetI	ASST	7 cut(s)	87, 103, 112, 208, 285, 322, 366
SfcI	CTRYAG	1 cut(s)	114
SgeI	CNNG	8 cut(s)	134, 177, 198, 204, 242, 253, 347, 368
SmlI	CTYRAG	1 cut(s)	212
SmoI	CTYRAG	1 cut(s)	212
Sse9I	AATT	1 cut(s)	295
SspMI	CTAG	2 cut(s)	165, 400
TaaI	ACNGT	1 cut(s)	356
TasI	AATT	1 cut(s)	295
Tru1I	TTAA	1 cut(s)	213
Tru9I	TTAA	1 cut(s)	213
TseI	GCWGC	2 cut(s)	110, 113
TspDTI	ATGAA	2 cut(s)	257, 363
Vha464I	CTTAAG	1 cut(s)	212
XspI	CTAG	2 cut(s)	165, 400

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.