Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0012164

Physical Location & Seq

Genomic Coordinates Reverse (-)

30625214 .. 30626028

Gene Structure 815 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG277600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 480 bp

ATGGCTCTCTCTCCAACTCTGTCTCACAACTCATTCTCATCCTTCTCTCCCATCCCACAGACTTTGAGAAGAAGCCCTCTTCACCTTTTGCCCATTAGAGCTGTAAAAGCTGCTGCAGAACCAGAAAAGGAGAAACTCAAACAGGACAAAACTCCCAAAGAGTCTAGTTCCAATGCTCAGCCTTCAAGTCCAAGCAAAGGCACAGCTACTCTTAAGCCTCCAAAGAAGCCTGTCTATTCCATGAAGAAGGGTCAGATTGTGAGGGTGGACAAAGAGAAGTACCTAAATAGTGTCAATTATCTATCTGTTGGACATCCACCTTATTACAAAGGGCTGGACTATATTTATGAAGACCGTGGTGAGGTATTGGATTTGCGCATATTTGAGACCGGAGAGTATGCACTGGTAAGAAACGTCAATTCCGTCTGGCTTCAATGCCTTTTCATTCATTTTGCAGTAACTGCAGATGTCGTTGAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0008150 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0009987 GO:0010257 GO:0010258 GO:0010598 GO:0016020 GO:0016043 GO:0022607 GO:0031976 GO:0031984 GO:0032991 GO:0034357 GO:0034622 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044422 GO:0044424 GO:0044425 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0055035 GO:0065003 GO:0071840 GO:0098796

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NdhO

Protein Analysis

159

Amino Acids

17.86

Weight (kDa)

9.36

Isoelectric Point (pI)

47.92

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NdhO	PF11910	81 - 145	2.8e-16	Cyanobacterial and plant NDH-1 subunit O

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0012164)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G74880
fragaria_vesca	FvH4_1g24330 FvH4_1g24330 FvH4_1g24330
malus_domestica	MD01G1003600.v1.1
prunus_persica	Prupe.6G157800_v2.0.a1
pyrus_communis	pycom01g02350
rosa_chinensis	RchiOBHm_Chr2g0120841
rosa_laevigata	RLG00000018594
rosa_multiflora	Rmu_sc0000621.1_g000009
rosa_roxburghii	Rroxscaffold_2G00122790
rosa_rugosa	Rorug02G0232000 Rorug02G0232000 Rorug02G0232100
rosa_samantha	Rh2AG288600 Rh2BG299600 Rh2CG277600 Rh2DG313700
rosa_wichuraiana	Rw2G023120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	377
AfaI	GTAC	1 cut(s)	281
AfiI	CCNNNNNNNGG	2 cut(s)	197, 361
AflII	CTTAAG	1 cut(s)	212
AgsI	TTSAA	3 cut(s)	186, 434, 476
AluBI	AGCT	3 cut(s)	101, 110, 206
AluI	AGCT	3 cut(s)	101, 110, 206
Alw26I	GTCTC	2 cut(s)	27, 380
AlwNI	CAGNNNCTG	1 cut(s)	461
ApeKI	GCWGC	2 cut(s)	110, 113
AspLEI	GCGC	1 cut(s)	378
AsuHPI	GGTGA	2 cut(s)	74, 371
BbsI	GAAGAC	1 cut(s)	357
BbvI	GCAGC	2 cut(s)	97, 100
BccI	CCATC	1 cut(s)	59
BcoDI	GTCTC	2 cut(s)	27, 380
BfaI	CTAG	1 cut(s)	165
BfmI	CTRYAG	2 cut(s)	114, 462
BfrI	CTTAAG	1 cut(s)	212
BisI	GCNGC	2 cut(s)	111, 114
BlpI	GCTNAGC	1 cut(s)	177
BlsI	GCNGC	2 cut(s)	112, 115
BpiI	GAAGAC	1 cut(s)	357
Bpu1102I	GCTNAGC	1 cut(s)	177
BsaI	GGTCTC	1 cut(s)	380
BsaJI	CCNNGG	1 cut(s)	355
BsaWI	WCCGGW	1 cut(s)	389
Bsc4I	CCNNNNNNNGG	2 cut(s)	197, 361
Bse1I	ACTGG	1 cut(s)	408
BseDI	CCNNGG	1 cut(s)	355
BseGI	GGATG	3 cut(s)	38, 51, 313
BseLI	CCNNNNNNNGG	2 cut(s)	197, 361
BseMII	CTCAG	1 cut(s)	191
BseNI	ACTGG	1 cut(s)	408
BseXI	GCAGC	2 cut(s)	97, 100
BsiSI	CCGG	1 cut(s)	390
BslI	CCNNNNNNNGG	2 cut(s)	197, 361
BsmAI	GTCTC	2 cut(s)	27, 380
Bso31I	GGTCTC	1 cut(s)	380
Bsp1720I	GCTNAGC	1 cut(s)	177
BspCNI	CTCAG	1 cut(s)	190
BspMAI	CTGCAG	2 cut(s)	118, 466
BspTI	CTTAAG	1 cut(s)	212
BspTNI	GGTCTC	1 cut(s)	380
BsrI	ACTGG	1 cut(s)	408
BssECI	CCNNGG	1 cut(s)	355
Bst4CI	ACNGT	1 cut(s)	356
Bst6I	CTCTTC	1 cut(s)	84
BstAFI	CTTAAG	1 cut(s)	212
BstAPI	GCANNNNNTGC	1 cut(s)	461
BstDEI	CTNAG	1 cut(s)	177
BstDSI	CCRYGG	1 cut(s)	355
BstF5I	GGATG	3 cut(s)	38, 51, 313
BstHHI	GCGC	1 cut(s)	378
BstMAI	GTCTC	2 cut(s)	27, 380
BstMWI	GCNNNNNNNGC	2 cut(s)	107, 461
BstSFI	CTRYAG	2 cut(s)	114, 462
BstV1I	GCAGC	2 cut(s)	97, 100
BstV2I	GAAGAC	1 cut(s)	357
BtgI	CCRYGG	1 cut(s)	355
BtsCI	GGATG	3 cut(s)	38, 51, 313
BtsIMutI	CAGTG	1 cut(s)	401
CaiI	CAGNNNCTG	1 cut(s)	461
CfoI	GCGC	1 cut(s)	378
Csp6I	GTAC	1 cut(s)	280
CspCI	CAANNNNNGTGG	2 cut(s)	45, 80
CviAII	CATG	1 cut(s)	241
CviQI	GTAC	1 cut(s)	280
DdeI	CTNAG	1 cut(s)	177
Eam1104I	CTCTTC	1 cut(s)	84
EarI	CTCTTC	1 cut(s)	84
Eco31I	GGTCTC	1 cut(s)	380
FaeI	CATG	1 cut(s)	244
FaiI	YATR	5 cut(s)	242, 342, 348, 380, 399
FatI	CATG	1 cut(s)	240
Fnu4HI	GCNGC	2 cut(s)	111, 114
FokI	GGATG	3 cut(s)	25, 38, 300
Fsp4HI	GCNGC	2 cut(s)	111, 114
FspBI	CTAG	1 cut(s)	165
FspI	TGCGCA	1 cut(s)	377
GlaI	GCGC	1 cut(s)	377
GluI	GCNGC	2 cut(s)	111, 114
HapII	CCGG	1 cut(s)	390
HhaI	GCGC	1 cut(s)	378
Hin1II	CATG	1 cut(s)	244
Hin6I	GCGC	1 cut(s)	376
HinP1I	GCGC	1 cut(s)	376
HinfI	GANTC	1 cut(s)	161
HpaII	CCGG	1 cut(s)	390
HphI	GGTGA	2 cut(s)	74, 371
Hpy166II	GTNNAC	1 cut(s)	268
Hpy188I	TCNGA	1 cut(s)	255
Hpy8I	GTNNAC	1 cut(s)	268
HpyAV	CCTTC	3 cut(s)	52, 192, 241
HpyCH4III	ACNGT	1 cut(s)	356
HpyCH4IV	ACGT	1 cut(s)	414
HpyCH4V	TGCA	4 cut(s)	116, 401, 455, 464
HpyF10VI	GCNNNNNNNGC	2 cut(s)	107, 461
HpyF3I	CTNAG	1 cut(s)	177
HpySE526I	ACGT	1 cut(s)	414
Hsp92II	CATG	1 cut(s)	244
HspAI	GCGC	1 cut(s)	376
LpnPI	CCDG	7 cut(s)	128, 135, 243, 320, 389, 403, 412
Lsp1109I	GCAGC	2 cut(s)	97, 100
MaeI	CTAG	1 cut(s)	165
MaeII	ACGT	1 cut(s)	414
MaeIII	GTNAC	1 cut(s)	457
MboII	GAAGA	4 cut(s)	71, 81, 256, 362
MluCI	AATT	2 cut(s)	295, 418
MlyI	GAGTC	1 cut(s)	170
MmeI	TCCRAC	2 cut(s)	38, 289
MnlI	CCTC	4 cut(s)	87, 228, 255, 355
MseI	TTAA	1 cut(s)	213
MspCI	CTTAAG	1 cut(s)	212
MspI	CCGG	1 cut(s)	390
MwoI	GCNNNNNNNGC	2 cut(s)	107, 461
NlaIII	CATG	1 cut(s)	244
NsbI	TGCGCA	1 cut(s)	377
PcsI	WCGNNNNNNNCGW	1 cut(s)	420
PkrI	GCNGC	2 cut(s)	112, 115
PleI	GAGTC	1 cut(s)	169
PpsI	GAGTC	1 cut(s)	169
PstI	CTGCAG	2 cut(s)	118, 466
PstNI	CAGNNNCTG	1 cut(s)	461
RsaI	GTAC	1 cut(s)	281
RsaNI	GTAC	1 cut(s)	280
SaqAI	TTAA	1 cut(s)	213
SatI	GCNGC	2 cut(s)	111, 114
SchI	GAGTC	1 cut(s)	170
SetI	ASST	8 cut(s)	87, 103, 112, 208, 285, 322, 366, 417
SfcI	CTRYAG	2 cut(s)	114, 462
SmlI	CTYRAG	1 cut(s)	212
SmoI	CTYRAG	1 cut(s)	212
Sse9I	AATT	2 cut(s)	295, 418
SspMI	CTAG	1 cut(s)	165
TaaI	ACNGT	1 cut(s)	356
TaiI	ACGT	1 cut(s)	417
TasI	AATT	2 cut(s)	295, 418
Tru1I	TTAA	1 cut(s)	213
Tru9I	TTAA	1 cut(s)	213
TscAI	CASTG	1 cut(s)	408
TseI	GCWGC	2 cut(s)	110, 113
TspDTI	ATGAA	4 cut(s)	257, 363, 433, 437
TspGWI	ACGGA	1 cut(s)	412
TspRI	CASTG	1 cut(s)	408
Vha464I	CTTAAG	1 cut(s)	212
XspI	CTAG	1 cut(s)	165

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.