Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr1

Orthogroup ID

OG0012164

Physical Location & Seq

Genomic Coordinates Reverse (-)

1899948 .. 1901930

Gene Structure 1983 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom01g02350.6

Sequence Viewer

CDS Protein Promoter (2k)

Length: 498 bp

ATGGCTTTCTCTGCAAGTAGTTGTACTTGTACCCTCCCTAAGAACCCTTTCTCATCCTTGTCTCGTTTCCCACGAACCCTGGGAAGGAACCCTACTCGTCTTTTGTCCATTAAAGCTGTAAAAGCTACCGAACCAGAAGCCAATAATAATAATACCGAGAAAGCGTCTTCGTCTTCCAATGCTCAACCTTCGACCGCGACCGCAGCTTCTAAGCCGCCTCCCAAGAAGAAGCCTGTCTACTCCATGAAGAAGGGTCAGATTGTGAGGGTGGAGAAAGACAAGTATCTTAATAGTGTTAATTATCTTTCTGTTGGACATCCACCTTATTACAAAGGATTGGACTATATTTATGAAGACCGCGGTGAGGTATTGGACTTGCGTATCTTTGAGACAGGAGAGTATGCACTTGTAGCATGGGTTGGGGTCCCAACTGCGCCAGCATGGCTTCCAACAGACATGCTTATCAGGTCAGACAAACTCGATTATGAGAGGCTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0008150 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0009987 GO:0010257 GO:0010258 GO:0010598 GO:0016020 GO:0016043 GO:0022607 GO:0031976 GO:0031984 GO:0032991 GO:0034357 GO:0034622 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044422 GO:0044424 GO:0044425 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0055035 GO:0065003 GO:0071840 GO:0098796

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NdhO

Protein Analysis

166

Amino Acids

18.33

Weight (kDa)

9.39

Isoelectric Point (pI)

40.52

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012164)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G74880
fragaria_vesca	FvH4_1g24330 FvH4_1g24330 FvH4_1g24330
malus_domestica	MD01G1003600.v1.1
prunus_persica	Prupe.6G157800_v2.0.a1
pyrus_communis	pycom01g02350
rosa_chinensis	RchiOBHm_Chr2g0120841
rosa_laevigata	RLG00000018594
rosa_multiflora	Rmu_sc0000621.1_g000009
rosa_roxburghii	Rroxscaffold_2G00122790
rosa_rugosa	Rorug02G0232000 Rorug02G0232000 Rorug02G0232100
rosa_samantha	Rh2AG288600 Rh2BG299600 Rh2CG277600 Rh2DG313700
rosa_wichuraiana	Rw2G023120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	237
AccII	CGCG	2 cut(s)	197, 360
AciI	CCGC	5 cut(s)	195, 201, 215, 358, 360
AfaI	GTAC	2 cut(s)	25, 31
AfiI	CCNNNNNNNGG	2 cut(s)	84, 364
AjnI	CCWGG	1 cut(s)	78
AluBI	AGCT	3 cut(s)	116, 125, 206
AluI	AGCT	3 cut(s)	116, 125, 206
Alw26I	GTCTC	2 cut(s)	66, 383
ApeKI	GCWGC	1 cut(s)	203
Asp700I	GAANNNNTTC	1 cut(s)	47
AspLEI	GCGC	1 cut(s)	436
AspS9I	GGNCC	1 cut(s)	424
AsuHPI	GGTGA	1 cut(s)	374
AvaII	GGWCC	1 cut(s)	424
BaeI	ACNNNNGTAYC	2 cut(s)	364, 397
BarI	GAAGNNNNNNTAC	4 cut(s)	76, 108, 221, 253
BbsI	GAAGAC	3 cut(s)	159, 165, 360
BbvI	GCAGC	1 cut(s)	215
BciT130I	CCWGG	1 cut(s)	80
BcoDI	GTCTC	2 cut(s)	66, 383
BglI	GCCNNNNNGGC	1 cut(s)	442
BisI	GCNGC	2 cut(s)	204, 215
BlsI	GCNGC	2 cut(s)	205, 216
Bme1390I	CCNGG	1 cut(s)	80
Bme18I	GGWCC	1 cut(s)	424
BmgT120I	GGNCC	1 cut(s)	424
BmiI	GGNNCC	3 cut(s)	89, 425, 426
BmrFI	CCNGG	1 cut(s)	80
BpiI	GAAGAC	3 cut(s)	159, 165, 360
BsaJI	CCNNGG	3 cut(s)	78, 79, 358
Bsc4I	CCNNNNNNNGG	2 cut(s)	84, 364
BseBI	CCWGG	1 cut(s)	80
BseDI	CCNNGG	3 cut(s)	78, 79, 358
BseGI	GGATG	2 cut(s)	53, 316
BseLI	CCNNNNNNNGG	2 cut(s)	84, 364
BseXI	GCAGC	1 cut(s)	215
Bsh1236I	CGCG	2 cut(s)	197, 360
Bsh1285I	CGRYCG	2 cut(s)	195, 201
BsiEI	CGRYCG	2 cut(s)	195, 201
BslFI	GGGAC	1 cut(s)	410
BslI	CCNNNNNNNGG	2 cut(s)	84, 364
BsmAI	GTCTC	2 cut(s)	66, 383
BsmFI	GGGAC	1 cut(s)	410
BspACI	CCGC	5 cut(s)	195, 201, 215, 358, 360
BspFNI	CGCG	2 cut(s)	197, 360
BspLI	GGNNCC	3 cut(s)	89, 425, 426
BssECI	CCNNGG	3 cut(s)	78, 79, 358
Bst2UI	CCWGG	1 cut(s)	80
BstC8I	GCNNGC	1 cut(s)	438
BstDEI	CTNAG	2 cut(s)	39, 210
BstDSI	CCRYGG	1 cut(s)	358
BstF5I	GGATG	2 cut(s)	53, 316
BstFNI	CGCG	2 cut(s)	197, 360
BstHHI	GCGC	1 cut(s)	436
BstMAI	GTCTC	2 cut(s)	66, 383
BstMCI	CGRYCG	2 cut(s)	195, 201
BstMWI	GCNNNNNNNGC	5 cut(s)	11, 122, 203, 410, 442
BstNI	CCWGG	1 cut(s)	80
BstNSI	RCATGY	1 cut(s)	460
BstSCI	CCNGG	1 cut(s)	78
BstUI	CGCG	2 cut(s)	197, 360
BstV1I	GCAGC	1 cut(s)	215
BstV2I	GAAGAC	3 cut(s)	159, 165, 360
BtgI	CCRYGG	1 cut(s)	358
BtsCI	GGATG	2 cut(s)	53, 316
Cac8I	GCNNGC	1 cut(s)	438
CfoI	GCGC	1 cut(s)	436
Cfr13I	GGNCC	1 cut(s)	424
Cfr42I	CCGCGG	1 cut(s)	361
CseI	GACGC	1 cut(s)	153
Csp6I	GTAC	2 cut(s)	24, 30
CviAII	CATG	4 cut(s)	244, 414, 441, 457
CviJI	RGCY	9 cut(s)	5, 116, 125, 140, 206, 214, 232, 445, 493
CviKI_1	RGCY	9 cut(s)	5, 116, 125, 140, 206, 214, 232, 445, 493
CviQI	GTAC	2 cut(s)	24, 30
DdeI	CTNAG	2 cut(s)	39, 210
Eco47I	GGWCC	1 cut(s)	424
EcoO109I	RGGNCCY	1 cut(s)	424
EcoRII	CCWGG	1 cut(s)	78
FaeI	CATG	4 cut(s)	247, 417, 444, 460
FaiI	YATR	8 cut(s)	245, 345, 351, 402, 415, 442, 458, 486
FaqI	GGGAC	1 cut(s)	410
FatI	CATG	4 cut(s)	243, 413, 440, 456
FblI	GTMKAC	1 cut(s)	237
Fnu4HI	GCNGC	2 cut(s)	204, 215
FokI	GGATG	2 cut(s)	40, 303
Fsp4HI	GCNGC	2 cut(s)	204, 215
GlaI	GCGC	1 cut(s)	435
GluI	GCNGC	2 cut(s)	204, 215
HgaI	GACGC	1 cut(s)	153
HhaI	GCGC	1 cut(s)	436
Hin1II	CATG	4 cut(s)	247, 417, 444, 460
Hin6I	GCGC	1 cut(s)	434
HinP1I	GCGC	1 cut(s)	434
HphI	GGTGA	1 cut(s)	374
Hpy166II	GTNNAC	1 cut(s)	238
Hpy188I	TCNGA	2 cut(s)	258, 472
Hpy8I	GTNNAC	1 cut(s)	238
HpyAV	CCTTC	3 cut(s)	78, 198, 244
HpyCH4V	TGCA	2 cut(s)	14, 404
HpyF10VI	GCNNNNNNNGC	5 cut(s)	11, 122, 203, 410, 442
HpyF3I	CTNAG	2 cut(s)	39, 210
Hsp92II	CATG	4 cut(s)	247, 417, 444, 460
HspAI	GCGC	1 cut(s)	434
KflI	GGGWCCC	1 cut(s)	424
KspI	CCGCGG	1 cut(s)	361
LpnPI	CCDG	7 cut(s)	65, 92, 147, 246, 378, 450, 451
Lsp1109I	GCAGC	1 cut(s)	215
MboII	GAAGA	5 cut(s)	159, 165, 238, 259, 365
MluCI	AATT	1 cut(s)	298
MmeI	TCCRAC	2 cut(s)	292, 473
MnlI	CCTC	5 cut(s)	44, 228, 258, 358, 483
MroXI	GAANNNNTTC	1 cut(s)	47
MseI	TTAA	3 cut(s)	111, 288, 297
MspA1I	CMGCKG	1 cut(s)	360
MspR9I	CCNGG	1 cut(s)	80
MvaI	CCWGG	1 cut(s)	80
MvnI	CGCG	2 cut(s)	197, 360
MwoI	GCNNNNNNNGC	5 cut(s)	11, 122, 203, 410, 442
NlaIII	CATG	4 cut(s)	247, 417, 444, 460
NlaIV	GGNNCC	3 cut(s)	89, 425, 426
NspI	RCATGY	1 cut(s)	460
PasI	CCCWGGG	1 cut(s)	79
PcsI	WCGNNNNNNNCGW	1 cut(s)	70
PdmI	GAANNNNTTC	1 cut(s)	47
PkrI	GCNGC	2 cut(s)	205, 216
PpuMI	RGGWCCY	1 cut(s)	424
Psp5II	RGGWCCY	1 cut(s)	424
Psp6I	CCWGG	1 cut(s)	78
PspGI	CCWGG	1 cut(s)	78
PspN4I	GGNNCC	3 cut(s)	89, 425, 426
PspPI	GGNCC	1 cut(s)	424
PspPPI	RGGWCCY	1 cut(s)	424
RsaI	GTAC	2 cut(s)	25, 31
RsaNI	GTAC	2 cut(s)	24, 30
SacII	CCGCGG	1 cut(s)	361
SaqAI	TTAA	3 cut(s)	111, 288, 297
SatI	GCNGC	2 cut(s)	204, 215
Sau96I	GGNCC	1 cut(s)	424
ScrFI	CCNGG	1 cut(s)	80
SetI	ASST	7 cut(s)	118, 127, 190, 208, 325, 369, 470
Sfr303I	CCGCGG	1 cut(s)	361
SgrBI	CCGCGG	1 cut(s)	361
SinI	GGWCC	1 cut(s)	424
Sse9I	AATT	1 cut(s)	298
SsiI	CCGC	5 cut(s)	195, 201, 215, 358, 360
StyD4I	CCNGG	1 cut(s)	78
TaqI	TCGA	2 cut(s)	191, 480
TasI	AATT	1 cut(s)	298
TatI	WGTACW	1 cut(s)	23
TauI	GCSGC	1 cut(s)	217
Tru1I	TTAA	3 cut(s)	111, 288, 297
Tru9I	TTAA	3 cut(s)	111, 288, 297
TseI	GCWGC	1 cut(s)	203
TspDTI	ATGAA	2 cut(s)	260, 366
VpaK11BI	GGWCC	1 cut(s)	424
XceI	RCATGY	1 cut(s)	460
XmiI	GTMKAC	1 cut(s)	237
XmnI	GAANNNNTTC	1 cut(s)	47

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.