Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb1

Orthogroup ID

OG0012164

Physical Location & Seq

Genomic Coordinates Reverse (-)

16217792 .. 16219311

Gene Structure 1520 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_1g24330.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 480 bp

ATGGCTTTCTCTCCAACCCTGTCACACAACTCATTCTCATCCTTCTCTCCCGTCCCACAGACTTTGAGAAGAATCCCTCTTCACCGTTTGCCCATTAGAGCTGTGAAAGCTGCTGCAGAACCAGAAAAGGACAAAACTCCCCAAGAGTCTAGTTCCAATGCTCAGCCTTCAAGTCCAAGCAAAGGCACAGCCACCCTTAAGCCTCCAAAGAAGCCTGTCTATTCCATGAAGAAGGGTCAGATTGTGAGGGTGGACAAAGAGAAGTACCTTAACAGTGTTAATTATCTATCTGTTGGACATCCACCTTATTACAAAGGGTTGGACTATATATATGAAGACCGTGGTGAGGTATTGGATTTGCGCATATTTGAGACTGGAGAGTATGCACTGATAGCATGGGTTGGGGTACCTACAGCACCAGCATGGCTTCCAACAGAAATGCTCATCAAGTCAGAAAAACTCGATTATGAGAGACTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0008150 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0009987 GO:0010257 GO:0010258 GO:0010598 GO:0016020 GO:0016043 GO:0022607 GO:0031976 GO:0031984 GO:0032991 GO:0034357 GO:0034622 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044422 GO:0044424 GO:0044425 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0055035 GO:0065003 GO:0071840 GO:0098796

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NdhO

Protein Analysis

160

Amino Acids

17.89

Weight (kDa)

9.32

Isoelectric Point (pI)

47.64

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NdhO	PF11910	76 - 149	1.9e-21	Cyanobacterial and plant NDH-1 subunit O

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0012164)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G74880
fragaria_vesca	FvH4_1g24330 FvH4_1g24330 FvH4_1g24330
malus_domestica	MD01G1003600.v1.1
prunus_persica	Prupe.6G157800_v2.0.a1
pyrus_communis	pycom01g02350
rosa_chinensis	RchiOBHm_Chr2g0120841
rosa_laevigata	RLG00000018594
rosa_multiflora	Rmu_sc0000621.1_g000009
rosa_roxburghii	Rroxscaffold_2G00122790
rosa_rugosa	Rorug02G0232000 Rorug02G0232000 Rorug02G0232100
rosa_samantha	Rh2AG288600 Rh2BG299600 Rh2CG277600 Rh2DG313700
rosa_wichuraiana	Rw2G023120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	362
Acc65I	GGTACC	1 cut(s)	406
AccB1I	GGYRCC	1 cut(s)	406
AfaI	GTAC	2 cut(s)	266, 408
AfiI	CCNNNNNNNGG	2 cut(s)	182, 346
AflII	CTTAAG	1 cut(s)	197
AgsI	TTSAA	1 cut(s)	171
AluBI	AGCT	2 cut(s)	101, 110
AluI	AGCT	2 cut(s)	101, 110
Alw26I	GTCTC	2 cut(s)	365, 466
ApeKI	GCWGC	2 cut(s)	110, 113
Asp718I	GGTACC	1 cut(s)	406
AspLEI	GCGC	1 cut(s)	363
AsuHPI	GGTGA	2 cut(s)	74, 356
BanI	GGYRCC	1 cut(s)	406
BbsI	GAAGAC	1 cut(s)	342
BbvI	GCAGC	2 cut(s)	97, 100
BcoDI	GTCTC	2 cut(s)	365, 466
BfaI	CTAG	1 cut(s)	150
BfmI	CTRYAG	2 cut(s)	114, 411
BfrI	CTTAAG	1 cut(s)	197
BisI	GCNGC	2 cut(s)	111, 114
BlpI	GCTNAGC	1 cut(s)	162
BlsI	GCNGC	2 cut(s)	112, 115
BmiI	GGNNCC	1 cut(s)	408
BpiI	GAAGAC	1 cut(s)	342
BpmI	CTGGAG	1 cut(s)	396
Bpu1102I	GCTNAGC	1 cut(s)	162
BsaJI	CCNNGG	1 cut(s)	340
Bsc4I	CCNNNNNNNGG	2 cut(s)	182, 346
Bse1I	ACTGG	1 cut(s)	379
BseDI	CCNNGG	1 cut(s)	340
BseGI	GGATG	2 cut(s)	38, 298
BseLI	CCNNNNNNNGG	2 cut(s)	182, 346
BseMII	CTCAG	1 cut(s)	176
BseNI	ACTGG	1 cut(s)	379
BseXI	GCAGC	2 cut(s)	97, 100
BshNI	GGYRCC	1 cut(s)	406
BslFI	GGGAC	1 cut(s)	38
BslI	CCNNNNNNNGG	2 cut(s)	182, 346
BsmAI	GTCTC	2 cut(s)	365, 466
BsmFI	GGGAC	1 cut(s)	38
Bsp1720I	GCTNAGC	1 cut(s)	162
BspCNI	CTCAG	1 cut(s)	175
BspLI	GGNNCC	1 cut(s)	408
BspMAI	CTGCAG	1 cut(s)	118
BspT107I	GGYRCC	1 cut(s)	406
BspTI	CTTAAG	1 cut(s)	197
BsrI	ACTGG	1 cut(s)	379
BssECI	CCNNGG	1 cut(s)	340
Bst4CI	ACNGT	3 cut(s)	86, 275, 341
Bst6I	CTCTTC	1 cut(s)	84
BstAFI	CTTAAG	1 cut(s)	197
BstDEI	CTNAG	1 cut(s)	162
BstDSI	CCRYGG	1 cut(s)	340
BstF5I	GGATG	2 cut(s)	38, 298
BstHHI	GCGC	1 cut(s)	363
BstMAI	GTCTC	2 cut(s)	365, 466
BstMWI	GCNNNNNNNGC	2 cut(s)	107, 392
BstSFI	CTRYAG	2 cut(s)	114, 411
BstV1I	GCAGC	2 cut(s)	97, 100
BstV2I	GAAGAC	1 cut(s)	342
BtgI	CCRYGG	1 cut(s)	340
BtsCI	GGATG	2 cut(s)	38, 298
BtsIMutI	CAGTG	2 cut(s)	280, 386
CfoI	GCGC	1 cut(s)	363
Csp6I	GTAC	2 cut(s)	265, 407
CspCI	CAANNNNNGTGG	2 cut(s)	45, 80
CviAII	CATG	3 cut(s)	226, 396, 423
CviJI	RGCY	8 cut(s)	5, 101, 110, 166, 191, 202, 214, 427
CviKI_1	RGCY	8 cut(s)	5, 101, 110, 166, 191, 202, 214, 427
CviQI	GTAC	2 cut(s)	265, 407
DdeI	CTNAG	1 cut(s)	162
Eam1104I	CTCTTC	1 cut(s)	84
EarI	CTCTTC	1 cut(s)	84
FaeI	CATG	3 cut(s)	229, 399, 426
FaqI	GGGAC	1 cut(s)	38
FatI	CATG	3 cut(s)	225, 395, 422
Fnu4HI	GCNGC	2 cut(s)	111, 114
FokI	GGATG	2 cut(s)	25, 285
Fsp4HI	GCNGC	2 cut(s)	111, 114
FspBI	CTAG	1 cut(s)	150
FspI	TGCGCA	1 cut(s)	362
GlaI	GCGC	1 cut(s)	362
GluI	GCNGC	2 cut(s)	111, 114
GsuI	CTGGAG	1 cut(s)	396
HhaI	GCGC	1 cut(s)	363
Hin1II	CATG	3 cut(s)	229, 399, 426
Hin6I	GCGC	1 cut(s)	361
HinP1I	GCGC	1 cut(s)	361
HinfI	GANTC	2 cut(s)	72, 146
HphI	GGTGA	2 cut(s)	74, 356
Hpy166II	GTNNAC	1 cut(s)	253
Hpy188I	TCNGA	2 cut(s)	240, 454
Hpy8I	GTNNAC	1 cut(s)	253
HpyAV	CCTTC	3 cut(s)	52, 177, 226
HpyCH4III	ACNGT	3 cut(s)	86, 275, 341
HpyCH4V	TGCA	2 cut(s)	116, 386
HpyF10VI	GCNNNNNNNGC	2 cut(s)	107, 392
HpyF3I	CTNAG	1 cut(s)	162
Hsp92II	CATG	3 cut(s)	229, 399, 426
HspAI	GCGC	1 cut(s)	361
KpnI	GGTACC	1 cut(s)	410
LpnPI	CCDG	5 cut(s)	32, 135, 228, 360, 432
Lsp1109I	GCAGC	2 cut(s)	97, 100
MaeI	CTAG	1 cut(s)	150
MaeIII	GTNAC	1 cut(s)	21
MboII	GAAGA	4 cut(s)	71, 81, 241, 347
MluCI	AATT	1 cut(s)	280
MlyI	GAGTC	1 cut(s)	155
MmeI	TCCRAC	4 cut(s)	38, 274, 300, 455
MnlI	CCTC	4 cut(s)	87, 213, 240, 340
MseI	TTAA	3 cut(s)	198, 270, 279
MslI	CAYNNNNRTG	1 cut(s)	421
MspCI	CTTAAG	1 cut(s)	197
MwoI	GCNNNNNNNGC	2 cut(s)	107, 392
NlaIII	CATG	3 cut(s)	229, 399, 426
NlaIV	GGNNCC	1 cut(s)	408
NmuCI	GTSAC	1 cut(s)	21
NsbI	TGCGCA	1 cut(s)	362
PfeI	GAWTC	1 cut(s)	72
PkrI	GCNGC	2 cut(s)	112, 115
PleI	GAGTC	1 cut(s)	154
PpsI	GAGTC	1 cut(s)	154
PspN4I	GGNNCC	1 cut(s)	408
PstI	CTGCAG	1 cut(s)	118
RsaI	GTAC	2 cut(s)	266, 408
RsaNI	GTAC	2 cut(s)	265, 407
RseI	CAYNNNNRTG	1 cut(s)	421
SaqAI	TTAA	3 cut(s)	198, 270, 279
SatI	GCNGC	2 cut(s)	111, 114
SchI	GAGTC	1 cut(s)	155
SetI	ASST	6 cut(s)	103, 112, 270, 307, 351, 412
SfcI	CTRYAG	2 cut(s)	114, 411
SmiMI	CAYNNNNRTG	1 cut(s)	421
SmlI	CTYRAG	1 cut(s)	197
SmoI	CTYRAG	1 cut(s)	197
Sse9I	AATT	1 cut(s)	280
SspMI	CTAG	1 cut(s)	150
TaaI	ACNGT	3 cut(s)	86, 275, 341
TaqI	TCGA	1 cut(s)	462
TasI	AATT	1 cut(s)	280
TfiI	GAWTC	1 cut(s)	72
Tru1I	TTAA	3 cut(s)	198, 270, 279
Tru9I	TTAA	3 cut(s)	198, 270, 279
TscAI	CASTG	2 cut(s)	280, 393
TseFI	GTSAC	1 cut(s)	21
TseI	GCWGC	2 cut(s)	110, 113
Tsp45I	GTSAC	1 cut(s)	21
TspDTI	ATGAA	2 cut(s)	242, 348
TspRI	CASTG	2 cut(s)	280, 393
Vha464I	CTTAAG	1 cut(s)	197
XspI	CTAG	1 cut(s)	150

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.