Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0012164

Physical Location & Seq

Genomic Coordinates Reverse (-)

32307158 .. 32308328

Gene Structure 1171 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000018594

Sequence Viewer

CDS Protein Promoter (2k)

Length: 495 bp

ATGGCTCTCTCTCCAACTCTGTCTCACAACTCATTCTCATCCTTCTCTCCCTTCCCACAGACTTTGAGAAGAAGCCCTCCTCACCTTTTGCCCATTAGAGCTGTAAAAGCTGCTGCAGAACCAGAAAAGGAGAAACTCAAACAGGACAAAACTCCCCAAGAGTCTAGTTCCAATGCTCAGCCTTCAAGTCCAAGCAAAGGCACAGCTACTCTTAAGCCTCCAAAGAAGCCTGTCTATTCCATGAAGAAGGGTCAGATTGTGAGGGTGGACAAAGAGAAGTACCTAAATAGTGTCAATTATCTATCTGTTGGACATCCACCTTATTACAAAGGGCTGGACTATATTTATGAAGACCGTGGTGAGGTATTGGATTTGCGCATATTTGAGACCGGAGAGTATGCACTGATAGCATGGGTTGGGGTACCTACTGCACCGGCATGGCTTCCAACAGACATGCTCATCAAGTCAGAGAAACTCGATTATGAGAGACTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0008150 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0009987 GO:0010257 GO:0010258 GO:0010598 GO:0016020 GO:0016043 GO:0022607 GO:0031976 GO:0031984 GO:0032991 GO:0034357 GO:0034622 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044422 GO:0044424 GO:0044425 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0055035 GO:0065003 GO:0071840 GO:0098796

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NdhO

Protein Analysis

165

Amino Acids

18.43

Weight (kDa)

9.28

Isoelectric Point (pI)

53.61

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NdhO	PF11910	81 - 154	3.3e-22	Cyanobacterial and plant NDH-1 subunit O

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012164)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G74880
fragaria_vesca	FvH4_1g24330 FvH4_1g24330 FvH4_1g24330
malus_domestica	MD01G1003600.v1.1
prunus_persica	Prupe.6G157800_v2.0.a1
pyrus_communis	pycom01g02350
rosa_chinensis	RchiOBHm_Chr2g0120841
rosa_laevigata	RLG00000018594
rosa_multiflora	Rmu_sc0000621.1_g000009
rosa_roxburghii	Rroxscaffold_2G00122790
rosa_rugosa	Rorug02G0232000 Rorug02G0232000 Rorug02G0232100
rosa_samantha	Rh2AG288600 Rh2BG299600 Rh2CG277600 Rh2DG313700
rosa_wichuraiana	Rw2G023120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	377
Acc65I	GGTACC	1 cut(s)	421
AccB1I	GGYRCC	1 cut(s)	421
AfaI	GTAC	2 cut(s)	281, 423
AfiI	CCNNNNNNNGG	2 cut(s)	197, 361
AflII	CTTAAG	1 cut(s)	212
AgsI	TTSAA	1 cut(s)	186
AluBI	AGCT	3 cut(s)	101, 110, 206
AluI	AGCT	3 cut(s)	101, 110, 206
Alw26I	GTCTC	3 cut(s)	27, 380, 481
ApeKI	GCWGC	2 cut(s)	110, 113
Asp718I	GGTACC	1 cut(s)	421
AspLEI	GCGC	1 cut(s)	378
AsuHPI	GGTGA	2 cut(s)	74, 371
BanI	GGYRCC	1 cut(s)	421
BbsI	GAAGAC	1 cut(s)	357
BbvI	GCAGC	2 cut(s)	97, 100
BcoDI	GTCTC	3 cut(s)	27, 380, 481
BfaI	CTAG	1 cut(s)	165
BfmI	CTRYAG	1 cut(s)	114
BfrI	CTTAAG	1 cut(s)	212
BisI	GCNGC	2 cut(s)	111, 114
BlpI	GCTNAGC	1 cut(s)	177
BlsI	GCNGC	2 cut(s)	112, 115
BmiI	GGNNCC	1 cut(s)	423
BpiI	GAAGAC	1 cut(s)	357
Bpu1102I	GCTNAGC	1 cut(s)	177
BsaI	GGTCTC	1 cut(s)	380
BsaJI	CCNNGG	1 cut(s)	355
BsaWI	WCCGGW	1 cut(s)	389
Bsc4I	CCNNNNNNNGG	2 cut(s)	197, 361
Bse118I	RCCGGY	1 cut(s)	433
BseDI	CCNNGG	1 cut(s)	355
BseGI	GGATG	2 cut(s)	38, 313
BseLI	CCNNNNNNNGG	2 cut(s)	197, 361
BseMII	CTCAG	1 cut(s)	191
BseRI	GAGGAG	1 cut(s)	69
BseXI	GCAGC	2 cut(s)	97, 100
BsgI	GTGCAG	1 cut(s)	414
BshNI	GGYRCC	1 cut(s)	421
BsiSI	CCGG	2 cut(s)	390, 434
BslI	CCNNNNNNNGG	2 cut(s)	197, 361
BsmAI	GTCTC	3 cut(s)	27, 380, 481
Bso31I	GGTCTC	1 cut(s)	380
Bsp1720I	GCTNAGC	1 cut(s)	177
BspCNI	CTCAG	1 cut(s)	190
BspLI	GGNNCC	1 cut(s)	423
BspMAI	CTGCAG	1 cut(s)	118
BspT107I	GGYRCC	1 cut(s)	421
BspTI	CTTAAG	1 cut(s)	212
BspTNI	GGTCTC	1 cut(s)	380
BsrFI	RCCGGY	1 cut(s)	433
BssAI	RCCGGY	1 cut(s)	433
BssECI	CCNNGG	1 cut(s)	355
Bst4CI	ACNGT	2 cut(s)	356, 492
BstAFI	CTTAAG	1 cut(s)	212
BstDEI	CTNAG	1 cut(s)	177
BstDSI	CCRYGG	1 cut(s)	355
BstF5I	GGATG	2 cut(s)	38, 313
BstHHI	GCGC	1 cut(s)	378
BstMAI	GTCTC	3 cut(s)	27, 380, 481
BstMWI	GCNNNNNNNGC	2 cut(s)	107, 407
BstNSI	RCATGY	1 cut(s)	457
BstSFI	CTRYAG	1 cut(s)	114
BstV1I	GCAGC	2 cut(s)	97, 100
BstV2I	GAAGAC	1 cut(s)	357
BtgI	CCRYGG	1 cut(s)	355
BtsCI	GGATG	2 cut(s)	38, 313
BtsIMutI	CAGTG	1 cut(s)	401
CfoI	GCGC	1 cut(s)	378
Cfr10I	RCCGGY	1 cut(s)	433
Csp6I	GTAC	2 cut(s)	280, 422
CspCI	CAANNNNNGTGG	2 cut(s)	45, 80
CviAII	CATG	4 cut(s)	241, 411, 438, 454
CviQI	GTAC	2 cut(s)	280, 422
DdeI	CTNAG	1 cut(s)	177
Eco31I	GGTCTC	1 cut(s)	380
FaeI	CATG	4 cut(s)	244, 414, 441, 457
FaiI	YATR	9 cut(s)	242, 342, 348, 380, 399, 412, 439, 455, 483
FatI	CATG	4 cut(s)	240, 410, 437, 453
Fnu4HI	GCNGC	2 cut(s)	111, 114
FokI	GGATG	2 cut(s)	25, 300
Fsp4HI	GCNGC	2 cut(s)	111, 114
FspBI	CTAG	1 cut(s)	165
FspI	TGCGCA	1 cut(s)	377
GlaI	GCGC	1 cut(s)	377
GluI	GCNGC	2 cut(s)	111, 114
HapII	CCGG	2 cut(s)	390, 434
HhaI	GCGC	1 cut(s)	378
Hin1II	CATG	4 cut(s)	244, 414, 441, 457
Hin6I	GCGC	1 cut(s)	376
HinP1I	GCGC	1 cut(s)	376
HinfI	GANTC	1 cut(s)	161
HpaII	CCGG	2 cut(s)	390, 434
HphI	GGTGA	2 cut(s)	74, 371
Hpy166II	GTNNAC	1 cut(s)	268
Hpy188I	TCNGA	2 cut(s)	255, 469
Hpy8I	GTNNAC	1 cut(s)	268
HpyAV	CCTTC	4 cut(s)	52, 61, 192, 241
HpyCH4III	ACNGT	2 cut(s)	356, 492
HpyCH4V	TGCA	3 cut(s)	116, 401, 431
HpyF10VI	GCNNNNNNNGC	2 cut(s)	107, 407
HpyF3I	CTNAG	1 cut(s)	177
Hsp92II	CATG	4 cut(s)	244, 414, 441, 457
HspAI	GCGC	1 cut(s)	376
KpnI	GGTACC	1 cut(s)	425
LpnPI	CCDG	6 cut(s)	128, 135, 243, 320, 403, 447
Lsp1109I	GCAGC	2 cut(s)	97, 100
MaeI	CTAG	1 cut(s)	165
MboII	GAAGA	3 cut(s)	81, 256, 362
MluCI	AATT	1 cut(s)	295
MlyI	GAGTC	1 cut(s)	170
MmeI	TCCRAC	3 cut(s)	38, 289, 470
MnlI	CCTC	5 cut(s)	87, 90, 228, 255, 355
MseI	TTAA	1 cut(s)	213
MslI	CAYNNNNRTG	1 cut(s)	436
MspCI	CTTAAG	1 cut(s)	212
MspI	CCGG	2 cut(s)	390, 434
MwoI	GCNNNNNNNGC	2 cut(s)	107, 407
NlaIII	CATG	4 cut(s)	244, 414, 441, 457
NlaIV	GGNNCC	1 cut(s)	423
NsbI	TGCGCA	1 cut(s)	377
NspI	RCATGY	1 cut(s)	457
PkrI	GCNGC	2 cut(s)	112, 115
PleI	GAGTC	1 cut(s)	169
PpsI	GAGTC	1 cut(s)	169
PspN4I	GGNNCC	1 cut(s)	423
PstI	CTGCAG	1 cut(s)	118
RsaI	GTAC	2 cut(s)	281, 423
RsaNI	GTAC	2 cut(s)	280, 422
RseI	CAYNNNNRTG	1 cut(s)	436
SaqAI	TTAA	1 cut(s)	213
SatI	GCNGC	2 cut(s)	111, 114
SchI	GAGTC	1 cut(s)	170
SetI	ASST	8 cut(s)	87, 103, 112, 208, 285, 322, 366, 427
SfcI	CTRYAG	1 cut(s)	114
SmiMI	CAYNNNNRTG	1 cut(s)	436
SmlI	CTYRAG	1 cut(s)	212
SmoI	CTYRAG	1 cut(s)	212
Sse9I	AATT	1 cut(s)	295
SspMI	CTAG	1 cut(s)	165
TaaI	ACNGT	2 cut(s)	356, 492
TaqI	TCGA	1 cut(s)	477
TasI	AATT	1 cut(s)	295
Tru1I	TTAA	1 cut(s)	213
Tru9I	TTAA	1 cut(s)	213
TscAI	CASTG	1 cut(s)	408
TseI	GCWGC	2 cut(s)	110, 113
TspDTI	ATGAA	2 cut(s)	257, 363
TspRI	CASTG	1 cut(s)	408
Vha464I	CTTAAG	1 cut(s)	212
XceI	RCATGY	1 cut(s)	457
XspI	CTAG	1 cut(s)	165

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.