Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0003733

Physical Location & Seq

Genomic Coordinates Reverse (-)

28299786 .. 28302728

Gene Structure 2943 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G75410.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1575 bp

ATGGCTGTGTATTACCCTAATAGTGTCGGCATGCAATCTCTTTACCAAGAATCCATTTACCTCAACGAACAACAACAACAACAACAACAAGCTTCTTCTTCCTCTGCTGCATCTTTCTCCGAGATTGTTTCCGGTGATGTTCGAAACAACGAGATGGTATTTATCCCACCAACAAGCGACGTAGCCGTCAACGGAAACGTAACGGTGTCAAGTAACGATCTAAGCTTTCACGGTGGAGGACTTTCTTTAAGTCTTGGTAATCAGATCCAGTCAGCTGTCTCTGTTTCTCCGTTTCAGTATCATTACCAGAATCTTTCGAACCAATTGAGTTACAATAATCTTAATCCTTCTACTATGTCTGATGAGAATGGGAAGAGCTTGAGTGTTCATCAGCATCACTCTGATCAAATTTTACCTTCCTCTGTTTACAACAACAATGGTAATAATGGTGTTGGATTCTACAACAATTACCGTTACGAGACATCAGGGTTTGTGAGTAGTGTACTGAGATCTCGTTACCTTAAACCAACACAACAATTGCTTGATGAAGTTGTTAGTGTAAGGAAAGATTTGAAATTGGGGAATAAGAAGATGAAGAATGATAAAGGTCAAGACTTTCACAATGGGTCTAGTGATAACATTACAGAAGATGATAAATCTCAATCGCAGGAGTTGTCTCCTTCAGAACGTCAGGAGCTACAGAGCAAGAAGAGCAAGCTTTTAACAATGGTGGATGAGGTAGATAAAAGGTATAACCAATACCATCATCAAATGGAAGCTTTAGCATCGTCTTTCGAGATGGTAACAGGTCTTGGAGCAGCTAAGCCTTACACATCCGTAGCTCTGAATAGAATCTCTCGCCATTTCCGCTGTTTACGCGACGCGATAAAAGAACAGATTCAGGTGATCAGAGGGAAGCTTGGGGAGAGAGAGACTTCTGATGAACAAGGAGAGAGGATACCGCGTCTTAGGTACTTAGATCAACGGTTGAGACAACAGAGAGCTTTGCATCAACAACTTGGAATGGTTAGACCAGCTTGGAGACCACAAAGAGGCTTACCTGAAAACTCTGTCTCTATACTTCGAGCTTGGCTCTTTGAGCATTTCCTTCATCCATATCCTAAAGAATCAGAGAAAATCATGCTTTCAAAGCAGACAGGACTATCGAAAAACCAGGTTGCAAATTGGTTTATTAACGCGAGAGTTCGACTATGGAAACCAATGATTGAAGAGATGTATAAAGAAGAGTTTGGAGAATCAGCAGAGTTACTCTCTAACTCTAATCAAGACACCAAAAAAATGCAGGAAACATCTCAGCTCAAACACGAAGACTCTTCGTCTTCGCAACAACAGAATCAGGGAAACAACAACAACAACATCCCATATACATCTGATGCAGAACAAAACCTAGTCTTTGCAGATCCTAAACCAGACCGTGCTACTACTGGAGATTACGACAGCTTGATGAACTATCATGGGTTTGGTATTGATGATTACAATCGTTACGTTGGCCTTGGAAACCAACAAGATGGCAGATATTCTAATCCCCATCAATTACACGACTTTGTTGTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0040034 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0048506 GO:0048509 GO:0048510 GO:0050789 GO:0050793 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Homeobox_KN POX

Protein Analysis

524

Amino Acids

59.68

Weight (kDa)

6.26

Isoelectric Point (pI)

42.14

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
POX	PF07526	168 - 296	3.6e-48	Associated with HOX
Homeobox_KN	PF05920	364 - 403	1.1e-18	Homeobox KN domain
Homeodomain	PF00046	371 - 403	4.3e-07	Homeodomain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003733)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G19700 AT1G19700 AT1G19700 AT1G19700 AT1G19700 AT1G75410 AT1G75410 AT1G75410
fragaria_vesca	FvH4_2g39260 FvH4_2g39260 FvH4_2g39260 FvH4_2g39260 FvH4_2g39260
malus_domestica	MD08G1024200.v1.1 MD15G1021800.v1.1
prunus_persica	Prupe.1G373600_v2.0.a1 Prupe.1G373600_v2.0.a1 Prupe.1G373600_v2.0.a1 Prupe.1G373600_v2.0.a1
pyrus_communis	pycom08g01900 pycom15g01810
rosa_chinensis	RchiOBHm_Chr6g0301751
rosa_laevigata	RLG00000011225
rosa_multiflora	Rmu_co8056140.1_g000001 Rmu_sc0005454.1_g000024
rosa_roxburghii	Rroxscaffold_7G00166450
rosa_rugosa	Rorug06G0309000.1 Rorug06G0309100.1 Rorug06G0309200
rosa_samantha	Rh6AG421200 Rh6BG427900 Rh6CG434500 Rh6DG421400
rosa_wichuraiana	Rw6G036460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	2 cut(s)	185, 1568
AccII	CGCG	4 cut(s)	879, 884, 964, 1199
AciI	CCGC	2 cut(s)	868, 962
AclWI	GGATC	2 cut(s)	259, 1415
AcsI	RAATTY	1 cut(s)	408
AcuI	CTGAAG	1 cut(s)	666
AfaI	GTAC	2 cut(s)	504, 974
AfiI	CCNNNNNNNGG	1 cut(s)	1052
AgsI	TTSAA	3 cut(s)	574, 1149, 1229
AhdI	GACNNNNNGTC	1 cut(s)	1336
AjnI	CCWGG	1 cut(s)	1173
Alw26I	GTCTC	7 cut(s)	283, 473, 681, 926, 985, 1036, 1078
AlwI	GGATC	2 cut(s)	259, 1415
AoxI	GGCC	1 cut(s)	1510
ApeKI	GCWGC	2 cut(s)	107, 818
ApoI	RAATTY	1 cut(s)	408
Asp700I	GAANNNNTTC	1 cut(s)	897
AsuHPI	GGTGA	2 cut(s)	146, 916
AsuII	TTCGAA	2 cut(s)	142, 317
BbsI	GAAGAC	2 cut(s)	1332, 1335
BbvI	GCAGC	2 cut(s)	94, 830
BccI	CCATC	5 cut(s)	148, 771, 793, 1523, 1557
BceAI	ACGGC	1 cut(s)	170
BciT130I	CCWGG	1 cut(s)	1175
BciVI	GTATCC	1 cut(s)	951
BclI	TGATCA	2 cut(s)	403, 906
BcoDI	GTCTC	7 cut(s)	283, 473, 681, 926, 985, 1036, 1078
BfaI	CTAG	2 cut(s)	630, 1409
BfmI	CTRYAG	1 cut(s)	698
BfuI	GTATCC	1 cut(s)	951
BglII	AGATCT	1 cut(s)	509
BisI	GCNGC	2 cut(s)	108, 819
BlpI	GCTNAGC	1 cut(s)	822
BlsI	GCNGC	2 cut(s)	109, 820
Bme1390I	CCNGG	1 cut(s)	1175
BmeRI	GACNNNNNGTC	1 cut(s)	1336
BmrFI	CCNGG	1 cut(s)	1175
BmsI	GCATC	5 cut(s)	119, 403, 794, 1018, 1384
BpiI	GAAGAC	2 cut(s)	1332, 1335
BplI	GAGNNNNNCTC	4 cut(s)	1077, 1109, 1256, 1288
BpmI	CTGGAG	1 cut(s)	1467
Bpu1102I	GCTNAGC	1 cut(s)	822
Bpu14I	TTCGAA	2 cut(s)	142, 317
BpuEI	CTTGAG	1 cut(s)	400
BsaBI	GATNNNNATC	1 cut(s)	1497
BsaI	GGTCTC	1 cut(s)	1036
BsaJI	CCNNGG	1 cut(s)	1513
BsaWI	WCCGGW	1 cut(s)	131
Bsc4I	CCNNNNNNNGG	1 cut(s)	1052
Bse1I	ACTGG	2 cut(s)	268, 1450
Bse8I	GATNNNNATC	1 cut(s)	1497
BseBI	CCWGG	1 cut(s)	1175
BseDI	CCNNGG	1 cut(s)	1513
BseGI	GGATG	4 cut(s)	739, 833, 1111, 1377
BseJI	GATNNNNATC	1 cut(s)	1497
BseLI	CCNNNNNNNGG	1 cut(s)	1052
BseMII	CTCAG	2 cut(s)	497, 1328
BseNI	ACTGG	2 cut(s)	268, 1450
BseXI	GCAGC	2 cut(s)	94, 830
Bsh1236I	CGCG	4 cut(s)	879, 884, 964, 1199
BshFI	GGCC	1 cut(s)	1512
BsiSI	CCGG	1 cut(s)	132
BslI	CCNNNNNNNGG	1 cut(s)	1052
BsmAI	GTCTC	7 cut(s)	283, 473, 681, 926, 985, 1036, 1078
BsnI	GGCC	1 cut(s)	1512
Bso31I	GGTCTC	1 cut(s)	1036
Bsp119I	TTCGAA	2 cut(s)	142, 317
Bsp143I	GATC	7 cut(s)	217, 264, 403, 509, 906, 979, 1420
Bsp1720I	GCTNAGC	1 cut(s)	822
BspACI	CCGC	2 cut(s)	868, 962
BspANI	GGCC	1 cut(s)	1512
BspCNI	CTCAG	2 cut(s)	498, 1327
BspFNI	CGCG	4 cut(s)	879, 884, 964, 1199
BspPI	GGATC	2 cut(s)	259, 1415
BspQI	GCTCTTC	2 cut(s)	368, 704
BspT104I	TTCGAA	2 cut(s)	142, 317
BspTNI	GGTCTC	1 cut(s)	1036
BsrI	ACTGG	2 cut(s)	268, 1450
BssECI	CCNNGG	1 cut(s)	1513
BssMI	GATC	7 cut(s)	217, 264, 403, 509, 906, 979, 1420
BssT1I	CCWWGG	1 cut(s)	1513
Bst2UI	CCWGG	1 cut(s)	1175
Bst4CI	ACNGT	5 cut(s)	205, 233, 473, 987, 1436
Bst6I	CTCTTC	5 cut(s)	368, 704, 1224, 1239, 1339
BstBI	TTCGAA	2 cut(s)	142, 317
BstC8I	GCNNGC	2 cut(s)	32, 716
BstDEI	CTNAG	6 cut(s)	221, 506, 822, 968, 976, 1314
BstF5I	GGATG	4 cut(s)	739, 833, 1111, 1377
BstFNI	CGCG	4 cut(s)	879, 884, 964, 1199
BstKTI	GATC	7 cut(s)	220, 267, 406, 512, 909, 982, 1423
BstMAI	GTCTC	7 cut(s)	283, 473, 681, 926, 985, 1036, 1078
BstMBI	GATC	7 cut(s)	217, 264, 403, 509, 906, 979, 1420
BstMWI	GCNNNNNNNGC	5 cut(s)	711, 867, 876, 1099, 1150
BstNI	CCWGG	1 cut(s)	1175
BstNSI	RCATGY	1 cut(s)	34
BstSCI	CCNGG	1 cut(s)	1173
BstSFI	CTRYAG	1 cut(s)	698
BstUI	CGCG	4 cut(s)	879, 884, 964, 1199
BstV1I	GCAGC	2 cut(s)	94, 830
BstV2I	GAAGAC	2 cut(s)	1332, 1335
BstX2I	RGATCY	3 cut(s)	264, 509, 1420
BstXI	CCANNNNNNTGG	1 cut(s)	1529
BstYI	RGATCY	3 cut(s)	264, 509, 1420
BsuI	GTATCC	1 cut(s)	951
BsuRI	GGCC	1 cut(s)	1512
BtsCI	GGATG	4 cut(s)	739, 833, 1111, 1377
Cac8I	GCNNGC	2 cut(s)	32, 716
CseI	GACGC	2 cut(s)	890, 953
CsiI	ACCWGGT	1 cut(s)	1173
Csp6I	GTAC	2 cut(s)	503, 973
CviAII	CATG	3 cut(s)	31, 1141, 1475
CviQI	GTAC	2 cut(s)	503, 973
DdeI	CTNAG	6 cut(s)	221, 506, 822, 968, 976, 1314
DpnI	GATC	7 cut(s)	219, 266, 405, 511, 908, 981, 1422
DpnII	GATC	7 cut(s)	217, 264, 403, 509, 906, 979, 1420
DrdI	GACNNNNNNGTC	2 cut(s)	185, 1568
DriI	GACNNNNNGTC	1 cut(s)	1336
DseDI	GACNNNNNNGTC	2 cut(s)	185, 1568
Eam1104I	CTCTTC	5 cut(s)	368, 704, 1224, 1239, 1339
Eam1105I	GACNNNNNGTC	1 cut(s)	1336
EarI	CTCTTC	5 cut(s)	368, 704, 1224, 1239, 1339
Eco130I	CCWWGG	1 cut(s)	1513
Eco31I	GGTCTC	1 cut(s)	1036
Eco57I	CTGAAG	1 cut(s)	666
EcoRII	CCWGG	1 cut(s)	1173
EcoT14I	CCWWGG	1 cut(s)	1513
ErhI	CCWWGG	1 cut(s)	1513
FaeI	CATG	3 cut(s)	34, 1144, 1478
FatI	CATG	3 cut(s)	30, 1140, 1474
FbaI	TGATCA	2 cut(s)	403, 906
Fnu4HI	GCNGC	2 cut(s)	108, 819
FokI	GGATG	4 cut(s)	746, 820, 1098, 1364
Fsp4HI	GCNGC	2 cut(s)	108, 819
FspBI	CTAG	2 cut(s)	630, 1409
GluI	GCNGC	2 cut(s)	108, 819
GsuI	CTGGAG	1 cut(s)	1467
HaeIII	GGCC	1 cut(s)	1512
HapII	CCGG	1 cut(s)	132
HgaI	GACGC	2 cut(s)	890, 953
Hin1II	CATG	3 cut(s)	34, 1144, 1478
HincII	GTYRAC	1 cut(s)	190
HindII	GTYRAC	1 cut(s)	190
HindIII	AAGCTT	5 cut(s)	90, 223, 716, 777, 917
HinfI	GANTC	9 cut(s)	50, 310, 456, 852, 898, 1127, 1256, 1331, 1354
HpaII	CCGG	1 cut(s)	132
HphI	GGTGA	2 cut(s)	146, 916
Hpy166II	GTNNAC	4 cut(s)	190, 427, 503, 875
Hpy188III	TCNNGA	4 cut(s)	611, 692, 796, 1286
Hpy8I	GTNNAC	4 cut(s)	190, 427, 503, 875
Hpy99I	CGWCG	2 cut(s)	182, 884
HpyAV	CCTTC	4 cut(s)	357, 426, 690, 1118
HpyCH4III	ACNGT	5 cut(s)	205, 233, 473, 987, 1436
HpyCH4IV	ACGT	4 cut(s)	180, 198, 688, 1506
HpyCH4V	TGCA	7 cut(s)	34, 110, 1009, 1181, 1303, 1397, 1418
HpyF10VI	GCNNNNNNNGC	5 cut(s)	711, 867, 876, 1099, 1150
HpyF3I	CTNAG	6 cut(s)	221, 506, 822, 968, 976, 1314
HpySE526I	ACGT	4 cut(s)	180, 198, 688, 1506
Hsp92II	CATG	3 cut(s)	34, 1144, 1478
Ksp22I	TGATCA	2 cut(s)	403, 906
Kzo9I	GATC	7 cut(s)	217, 264, 403, 509, 906, 979, 1420
LguI	GCTCTTC	2 cut(s)	368, 704
LmnI	GCTCC	2 cut(s)	694, 815
Lsp1109I	GCAGC	2 cut(s)	94, 830
LweI	GCATC	5 cut(s)	119, 403, 794, 1018, 1384
MabI	ACCWGGT	1 cut(s)	1173
MaeI	CTAG	2 cut(s)	630, 1409
MaeII	ACGT	4 cut(s)	180, 198, 688, 1506
MaeIII	GTNAC	8 cut(s)	199, 212, 329, 473, 515, 802, 1266, 1502
MalI	GATC	7 cut(s)	219, 266, 405, 511, 908, 981, 1422
MboI	GATC	7 cut(s)	217, 264, 403, 509, 906, 979, 1420
MfeI	CAATTG	2 cut(s)	323, 536
MflI	RGATCY	3 cut(s)	264, 509, 1420
MluCI	AATT	7 cut(s)	323, 408, 466, 536, 575, 1183, 1553
MlyI	GAGTC	1 cut(s)	1325
MmeI	TCCRAC	1 cut(s)	433
MnlI	CCTC	8 cut(s)	71, 112, 230, 430, 730, 905, 948, 1046
MroXI	GAANNNNTTC	1 cut(s)	897
MseI	TTAA	5 cut(s)	248, 342, 522, 722, 1194
MspA1I	CMGCKG	2 cut(s)	275, 870
MspI	CCGG	1 cut(s)	132
MspR9I	CCNGG	1 cut(s)	1175
MunI	CAATTG	2 cut(s)	323, 536
MvaI	CCWGG	1 cut(s)	1175
MvnI	CGCG	4 cut(s)	879, 884, 964, 1199
MwoI	GCNNNNNNNGC	5 cut(s)	711, 867, 876, 1099, 1150
NdeII	GATC	7 cut(s)	217, 264, 403, 509, 906, 979, 1420
NlaIII	CATG	3 cut(s)	34, 1144, 1478
NspI	RCATGY	1 cut(s)	34
NspV	TTCGAA	2 cut(s)	142, 317
PaeI	GCATGC	1 cut(s)	34
PciSI	GCTCTTC	2 cut(s)	368, 704
PdmI	GAANNNNTTC	1 cut(s)	897
PfeI	GAWTC	8 cut(s)	50, 310, 456, 852, 898, 1127, 1256, 1354
PkrI	GCNGC	2 cut(s)	109, 820
PleI	GAGTC	1 cut(s)	1325
PpsI	GAGTC	1 cut(s)	1325
Psp6I	CCWGG	1 cut(s)	1173
PspGI	CCWGG	1 cut(s)	1173
PsuI	RGATCY	3 cut(s)	264, 509, 1420
PvuII	CAGCTG	1 cut(s)	275
RsaI	GTAC	2 cut(s)	504, 974
RsaNI	GTAC	2 cut(s)	503, 973
SapI	GCTCTTC	2 cut(s)	368, 704
SaqAI	TTAA	5 cut(s)	248, 342, 522, 722, 1194
SatI	GCNGC	2 cut(s)	108, 819
Sau3AI	GATC	7 cut(s)	217, 264, 403, 509, 906, 979, 1420
SchI	GAGTC	1 cut(s)	1325
ScrFI	CCNGG	1 cut(s)	1175
SexAI	ACCWGGT	1 cut(s)	1173
SfaNI	GCATC	5 cut(s)	119, 403, 794, 1018, 1384
SfcI	CTRYAG	1 cut(s)	698
SfuI	TTCGAA	2 cut(s)	142, 317
SmlI	CTYRAG	1 cut(s)	379
SmoI	CTYRAG	1 cut(s)	379
SphI	GCATGC	1 cut(s)	34
Sse9I	AATT	7 cut(s)	323, 408, 466, 536, 575, 1183, 1553
SsiI	CCGC	2 cut(s)	868, 962
SspMI	CTAG	2 cut(s)	630, 1409
StyD4I	CCNGG	1 cut(s)	1173
StyI	CCWWGG	1 cut(s)	1513
TaaI	ACNGT	5 cut(s)	205, 233, 473, 987, 1436
TaiI	ACGT	4 cut(s)	183, 201, 691, 1509
TaqI	TCGA	6 cut(s)	142, 317, 795, 1084, 1166, 1207
TasI	AATT	7 cut(s)	323, 408, 466, 536, 575, 1183, 1553
TatI	WGTACW	1 cut(s)	502
TfiI	GAWTC	8 cut(s)	50, 310, 456, 852, 898, 1127, 1256, 1354
Tru1I	TTAA	5 cut(s)	248, 342, 522, 722, 1194
Tru9I	TTAA	5 cut(s)	248, 342, 522, 722, 1194
TseI	GCWGC	2 cut(s)	107, 818
TspDTI	ATGAA	6 cut(s)	377, 561, 608, 957, 1100, 1481
TspGWI	ACGGA	3 cut(s)	207, 279, 826
XapI	RAATTY	1 cut(s)	408
XceI	RCATGY	1 cut(s)	34
XmnI	GAANNNNTTC	1 cut(s)	897
XspI	CTAG	2 cut(s)	630, 1409

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.