Rh6DG421400

BEL1-like homeodomain protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6D
OG0003733
Physical Location & Seq
Reverse (-)
60306091 .. 60310346
4256 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6DG421400.1

Sequence Viewer

Length: 1317 bp
ATGGCTACATATTTCCAAAATTTAAGTAATCAAAATTTGTTGACCCCCTATCCAGGGGATGAGAAGCTTGCTTCTTATCCTGAACAGCCTAGTAACATGATGATGTATATGAATCAAGCTTCATATCCCGGATCCTACACCGATGTCTTGTCCGGTGGCTCTTTCTCCCCCAACAAATGTTCTGAGTCTGATGGTGGTAGGAATGAAATGATGTTTATTCCACCTACAAGTGGCCCGGTCAGAGATTGTGTGGGTGGGGATTCATTGATAGGGTCTCCTGATGGCAAACGTGGTATTCAGGATCATGGATTGTCTCTTAGCCTTGCCACACAAATTCCACCTGCAGTTTCTGTTCCTTCGTTTCAGTACCAGTATCTGAATTCAAGTCTCCCTTCGGTTTTGAGCACTTCTCAAATCCTAGGGAAGGGAGAATTTCAATGTAAAGGTGATGATTACAGCCAAAGTGACGAGTTTAGAAACTTTGAAAATTTGACATCTGGCTTATATGACTCTCTCAAAACACAGAATTTCTCCAATCCTATGTGCTCCATGGTCCCCAAAGAAATGCATTCCGAAGCATACTTGTATGACTCATTAGGTTTTTCAAAGTCTTTATTAAACACCAAGTACCTCAAGGCAGCTCAGCAATTGCTTGATGAAGTGGTAAATGTACGAAAGGCTTTGAAGCAGTCTAGATCGAACAAACATCAAAGAACAGACGGTTCGAAAGAGACTGACGGGATAAGAATGTCATCCGACCCTAGTGAGCCAAGCGCCGTATCTTCTGTTGAGTTATCACCAGTAGAAAGGCAGGATTTACAGAACAAGAAGACCAAACTTTTGTCCATGTTGGATGAGGTAGATAGAAGATACAAGCAATATTACCATCAAATGCAAAACGTGGTGGCATTTTTTGACAAGGCAGCTGGGAATGGGGCTGCCGGACCATACACAGCACTAGCTCTACAAGCAATTTCCCGTCATTTTCGCAGTTTGCATGATGCAATCAAGGGCCAGATTCAAGCGTCACAGAGAAGCCTGGGAGAGAAAGATACTCCATCAGATGCTCAAGGAGAAGTAATACCTCGCCTCCGTTACGTGGACCAGCAGCTCAGACAGCAGAGGGCATTTCAGCAGCATGGTGTAATGCAACATTCTTGGAGACCTCAAAGGGGACTTCCTGAAAGCTCTGTTGCAATCCTTCGCGCTTGGTTATTTGAGCACTTCCTTCTCCCGTATGTAACTATAAACCTTTTCCCTTTGCTTGAATTCTTGAAACTTGTACTTACCAACTTTTTACGAACTTCATTTCACTGA

Protein Analysis

438

Amino Acids

49.08

Weight (kDa)

7.15

Isoelectric Point (pI)

44.77

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
POX PF07526 205 - 336 5.3e-47 Associated with HOX
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 349
Acc36I ACCTGC 1 cut(s) 349
AccII CGCG 1 cut(s) 1206
AclWI GGATC 3 cut(s) 126, 139, 309
AcsI RAATTY 8 cut(s) 19, 34, 333, 379, 431, 487, 526, 1268
AfaI GTAC 4 cut(s) 368, 629, 672, 1284
AfiI CCNNNNNNNGG 6 cut(s) 53, 54, 230, 424, 1099, 1172
AgsI TTSAA 8 cut(s) 384, 437, 485, 606, 685, 1022, 1268, 1276
AjnI CCWGG 2 cut(s) 52, 1038
AluBI AGCT 7 cut(s) 67, 119, 641, 926, 962, 1111, 1188
AluI AGCT 7 cut(s) 67, 119, 641, 926, 962, 1111, 1188
Alw21I GWGCWC 3 cut(s) 407, 548, 1224
Alw26I GTCTC 5 cut(s) 279, 318, 392, 725, 1156
AlwI GGATC 3 cut(s) 126, 139, 309
AlwNI CAGNNNCTG 2 cut(s) 350, 376
AoxI GGCC 2 cut(s) 232, 1012
ApeKI GCWGC 5 cut(s) 638, 923, 938, 1108, 1135
ApoI RAATTY 8 cut(s) 19, 34, 333, 379, 431, 487, 526, 1268
ArsI GACNNNNNNTTYG 2 cut(s) 823, 855
AspA2I CCTAGG 1 cut(s) 418
AspLEI GCGC 2 cut(s) 776, 1208
AspS9I GGNCC 5 cut(s) 233, 553, 944, 1012, 1102
AsuC2I CCSGG 2 cut(s) 129, 236
AsuHPI GGTGA 2 cut(s) 458, 789
AsuII TTCGAA 1 cut(s) 725
AvaII GGWCC 3 cut(s) 553, 944, 1102
AvrII CCTAGG 1 cut(s) 418
BamHI GGATCC 1 cut(s) 131
BbsI GAAGAC 1 cut(s) 836
Bbv12I GWGCWC 3 cut(s) 407, 548, 1224
BbvI GCAGC 5 cut(s) 650, 925, 935, 1120, 1147
BccI CCATC 4 cut(s) 185, 275, 894, 1066
BceAI ACGGC 1 cut(s) 761
BciT130I CCWGG 2 cut(s) 54, 1040
BcnI CCSGG 2 cut(s) 129, 236
BcoDI GTCTC 5 cut(s) 279, 318, 392, 725, 1156
BfaI CTAG 5 cut(s) 90, 419, 693, 762, 959
BfmI CTRYAG 1 cut(s) 342
BfoI RGCGCY 1 cut(s) 777
BfuAI ACCTGC 1 cut(s) 349
BisI GCNGC 5 cut(s) 639, 924, 939, 1109, 1136
BlnI CCTAGG 1 cut(s) 418
BlpI GCTNAGC 1 cut(s) 642
BlsI GCNGC 5 cut(s) 640, 925, 940, 1110, 1137
Bme1390I CCNGG 4 cut(s) 54, 129, 236, 1040
Bme18I GGWCC 3 cut(s) 553, 944, 1102
BmgT120I GGNCC 5 cut(s) 233, 553, 944, 1012, 1102
BmiI GGNNCC 2 cut(s) 133, 555
BmrFI CCNGG 4 cut(s) 54, 129, 236, 1040
BmsI GCATC 2 cut(s) 991, 1054
BpiI GAAGAC 1 cut(s) 836
BplI GAGNNNNNCTC 2 cut(s) 394, 426
Bpu1102I GCTNAGC 1 cut(s) 642
Bpu14I TTCGAA 1 cut(s) 725
BpuEI CTTGAG 2 cut(s) 617, 1053
BpuMI CCSGG 2 cut(s) 129, 236
BsaAI YACGTR 1 cut(s) 1099
BsaI GGTCTC 2 cut(s) 279, 1156
BsaJI CCNNGG 4 cut(s) 53, 418, 549, 1039
BsaWI WCCGGW 1 cut(s) 152
BsaXI ACNNNNNCTCC 2 cut(s) 1074, 1104
Bsc4I CCNNNNNNNGG 6 cut(s) 53, 54, 230, 424, 1099, 1172
Bse1I ACTGG 2 cut(s) 370, 800
BseBI CCWGG 2 cut(s) 54, 1040
BseDI CCNNGG 4 cut(s) 53, 418, 549, 1039
BseGI GGATG 3 cut(s) 64, 752, 859
BseLI CCNNNNNNNGG 6 cut(s) 53, 54, 230, 424, 1099, 1172
BseMII CTCAG 3 cut(s) 174, 656, 1126
BseNI ACTGG 2 cut(s) 370, 800
BseXI GCAGC 5 cut(s) 650, 925, 935, 1120, 1147
BseYI CCCAGC 1 cut(s) 926
Bsh1236I CGCG 1 cut(s) 1206
BshFI GGCC 2 cut(s) 234, 1014
BsiHKAI GWGCWC 3 cut(s) 407, 548, 1224
BsiSI CCGG 4 cut(s) 129, 153, 236, 942
BslFI GGGAC 2 cut(s) 539, 1188
BslI CCNNNNNNNGG 6 cut(s) 53, 54, 230, 424, 1099, 1172
BsmAI GTCTC 5 cut(s) 279, 318, 392, 725, 1156
BsmFI GGGAC 2 cut(s) 539, 1188
BsmI GAATGC 1 cut(s) 568
BsnI GGCC 2 cut(s) 234, 1014
Bso31I GGTCTC 2 cut(s) 279, 1156
Bsp119I TTCGAA 1 cut(s) 725
Bsp1286I GDGCHC 3 cut(s) 407, 548, 1224
Bsp143I GATC 3 cut(s) 131, 301, 695
Bsp1720I GCTNAGC 1 cut(s) 642
Bsp19I CCATGG 1 cut(s) 549
BspANI GGCC 2 cut(s) 234, 1014
BspCNI CTCAG 3 cut(s) 175, 655, 1125
BspFNI CGCG 1 cut(s) 1206
BspLI GGNNCC 2 cut(s) 133, 555
BspMAI CTGCAG 1 cut(s) 346
BspMI ACCTGC 1 cut(s) 349
BspPI GGATC 3 cut(s) 126, 139, 309
BspT104I TTCGAA 1 cut(s) 725
BspTNI GGTCTC 2 cut(s) 279, 1156
BsrI ACTGG 2 cut(s) 370, 800
BssECI CCNNGG 4 cut(s) 53, 418, 549, 1039
BssMI GATC 3 cut(s) 131, 301, 695
BssT1I CCWWGG 2 cut(s) 418, 549
Bst2UI CCWGG 2 cut(s) 54, 1040
Bst4CI ACNGT 1 cut(s) 722
BstBAI YACGTR 1 cut(s) 1099
BstBI TTCGAA 1 cut(s) 725
BstC8I GCNNGC 1 cut(s) 69
BstDEI CTNAG 4 cut(s) 183, 317, 642, 1112
BstDSI CCRYGG 1 cut(s) 549
BstENI CCTNNNNNAGG 1 cut(s) 422
BstF5I GGATG 3 cut(s) 64, 752, 859
BstFNI CGCG 1 cut(s) 1206
BstH2I RGCGCY 1 cut(s) 777
BstHHI GCGC 2 cut(s) 776, 1208
BstKTI GATC 3 cut(s) 134, 304, 698
BstMAI GTCTC 5 cut(s) 279, 318, 392, 725, 1156
BstMBI GATC 3 cut(s) 131, 301, 695
BstMWI GCNNNNNNNGC 2 cut(s) 968, 1117
BstNI CCWGG 2 cut(s) 54, 1040
BstSCI CCNGG 4 cut(s) 52, 127, 234, 1038
BstSFI CTRYAG 1 cut(s) 342
BstUI CGCG 1 cut(s) 1206
BstV1I GCAGC 5 cut(s) 650, 925, 935, 1120, 1147
BstV2I GAAGAC 1 cut(s) 836
BstX2I RGATCY 1 cut(s) 131
BstYI RGATCY 1 cut(s) 131
BsuRI GGCC 2 cut(s) 234, 1014
BtgI CCRYGG 1 cut(s) 549
BtsCI GGATG 3 cut(s) 64, 752, 859
BtsIMutI CAGTG 1 cut(s) 1312
BveI ACCTGC 1 cut(s) 349
Cac8I GCNNGC 1 cut(s) 69
CaiI CAGNNNCTG 2 cut(s) 350, 376
CfoI GCGC 2 cut(s) 776, 1208
Cfr13I GGNCC 5 cut(s) 233, 553, 944, 1012, 1102
CseI GACGC 1 cut(s) 1014
Csp6I GTAC 4 cut(s) 367, 628, 671, 1283
CviAII CATG 6 cut(s) 97, 305, 550, 847, 998, 1139
CviQI GTAC 4 cut(s) 367, 628, 671, 1283
DdeI CTNAG 4 cut(s) 183, 317, 642, 1112
DpnI GATC 3 cut(s) 133, 303, 697
DpnII GATC 3 cut(s) 131, 301, 695
Eco130I CCWWGG 2 cut(s) 418, 549
Eco31I GGTCTC 2 cut(s) 279, 1156
Eco47I GGWCC 3 cut(s) 553, 944, 1102
EcoNI CCTNNNNNAGG 1 cut(s) 422
EcoRI GAATTC 2 cut(s) 379, 1268
EcoRII CCWGG 2 cut(s) 52, 1038
EcoT14I CCWWGG 2 cut(s) 418, 549
EcoT22I ATGCAT 1 cut(s) 570
ErhI CCWWGG 2 cut(s) 418, 549
FaeI CATG 6 cut(s) 100, 308, 553, 850, 1001, 1142
FalI AAGNNNNNCTT 2 cut(s) 376, 408
FaqI GGGAC 2 cut(s) 539, 1188
FatI CATG 6 cut(s) 96, 304, 549, 846, 997, 1138
Fnu4HI GCNGC 5 cut(s) 639, 924, 939, 1109, 1136
FokI GGATG 3 cut(s) 71, 739, 866
Fsp4HI GCNGC 5 cut(s) 639, 924, 939, 1109, 1136
FspBI CTAG 5 cut(s) 90, 419, 693, 762, 959
GlaI GCGC 2 cut(s) 775, 1207
GluI GCNGC 5 cut(s) 639, 924, 939, 1109, 1136
GsaI CCCAGC 1 cut(s) 930
HaeII RGCGCY 1 cut(s) 777
HaeIII GGCC 2 cut(s) 234, 1014
HapII CCGG 4 cut(s) 129, 153, 236, 942
HgaI GACGC 1 cut(s) 1014
HhaI GCGC 2 cut(s) 776, 1208
Hin1II CATG 6 cut(s) 100, 308, 553, 850, 1001, 1142
Hin6I GCGC 2 cut(s) 774, 1206
HinP1I GCGC 2 cut(s) 774, 1206
HincII GTYRAC 1 cut(s) 42
HindII GTYRAC 1 cut(s) 42
HindIII AAGCTT 2 cut(s) 65, 117
HinfI GANTC 6 cut(s) 112, 185, 260, 509, 590, 1018
HpaII CCGG 4 cut(s) 129, 153, 236, 942
HphI GGTGA 2 cut(s) 458, 789
Hpy166II GTNNAC 2 cut(s) 42, 1102
Hpy188I TCNGA 8 cut(s) 184, 190, 242, 378, 574, 757, 1063, 1115
Hpy188III TCNNGA 6 cut(s) 80, 278, 299, 693, 1181, 1273
Hpy8I GTNNAC 2 cut(s) 42, 1102
HpyAV CCTTC 5 cut(s) 366, 402, 418, 1211, 1238
HpyCH4III ACNGT 1 cut(s) 722
HpyCH4IV ACGT 3 cut(s) 289, 900, 1098
HpyCH4V TGCA 7 cut(s) 344, 568, 895, 997, 1004, 1150, 1196
HpyF10VI GCNNNNNNNGC 2 cut(s) 968, 1117
HpyF3I CTNAG 4 cut(s) 183, 317, 642, 1112
HpySE526I ACGT 3 cut(s) 289, 900, 1098
Hsp92II CATG 6 cut(s) 100, 308, 553, 850, 1001, 1142
HspAI GCGC 2 cut(s) 774, 1206
Kzo9I GATC 3 cut(s) 131, 301, 695
LmnI GCTCC 1 cut(s) 551
Lsp1109I GCAGC 5 cut(s) 650, 925, 935, 1120, 1147
LweI GCATC 2 cut(s) 991, 1054
MaeI CTAG 5 cut(s) 90, 419, 693, 762, 959
MaeII ACGT 3 cut(s) 289, 900, 1098
MaeIII GTNAC 5 cut(s) 92, 464, 1026, 1094, 1240
MalI GATC 3 cut(s) 133, 303, 697
MboI GATC 3 cut(s) 131, 301, 695
MboII GAAGA 3 cut(s) 774, 841, 879
MfeI CAATTG 1 cut(s) 647
MflI RGATCY 1 cut(s) 131
MhlI GDGCHC 3 cut(s) 407, 548, 1224
MlyI GAGTC 3 cut(s) 194, 503, 584
MmeI TCCRAC 2 cut(s) 780, 831
MnlI CCTC 6 cut(s) 641, 850, 1095, 1100, 1116, 1176
Mph1103I ATGCAT 1 cut(s) 570
MseI TTAA 2 cut(s) 23, 617
MslI CAYNNNNRTG 1 cut(s) 101
MspA1I CMGCKG 1 cut(s) 926
MspI CCGG 4 cut(s) 129, 153, 236, 942
MspR9I CCNGG 4 cut(s) 54, 129, 236, 1040
MunI CAATTG 1 cut(s) 647
Mva1269I GAATGC 1 cut(s) 568
MvaI CCWGG 2 cut(s) 54, 1040
MvnI CGCG 1 cut(s) 1206
MwoI GCNNNNNNNGC 2 cut(s) 968, 1117
NciI CCSGG 2 cut(s) 129, 236
NcoI CCATGG 1 cut(s) 549
NdeII GATC 3 cut(s) 131, 301, 695
NlaIII CATG 6 cut(s) 100, 308, 553, 850, 1001, 1142
NlaIV GGNNCC 2 cut(s) 133, 555
NmuCI GTSAC 2 cut(s) 464, 1026
NsiI ATGCAT 1 cut(s) 570
NspV TTCGAA 1 cut(s) 725
PaqCI CACCTGC 1 cut(s) 349
PctI GAATGC 1 cut(s) 568
PfeI GAWTC 3 cut(s) 112, 260, 1018
PfoI TCCNGGA 1 cut(s) 127
PkrI GCNGC 5 cut(s) 640, 925, 940, 1110, 1137
PleI GAGTC 3 cut(s) 193, 503, 584
PpsI GAGTC 3 cut(s) 193, 503, 584
Ppu21I YACGTR 1 cut(s) 1099
Psp6I CCWGG 2 cut(s) 52, 1038
PspFI CCCAGC 1 cut(s) 926
PspGI CCWGG 2 cut(s) 52, 1038
PspN4I GGNNCC 2 cut(s) 133, 555
PspPI GGNCC 5 cut(s) 233, 553, 944, 1012, 1102
PstI CTGCAG 1 cut(s) 346
PstNI CAGNNNCTG 2 cut(s) 350, 376
PsuI RGATCY 1 cut(s) 131
PvuII CAGCTG 1 cut(s) 926
RsaI GTAC 4 cut(s) 368, 629, 672, 1284
RsaNI GTAC 4 cut(s) 367, 628, 671, 1283
RseI CAYNNNNRTG 1 cut(s) 101
SaqAI TTAA 2 cut(s) 23, 617
SatI GCNGC 5 cut(s) 639, 924, 939, 1109, 1136
Sau3AI GATC 3 cut(s) 131, 301, 695
Sau96I GGNCC 5 cut(s) 233, 553, 944, 1012, 1102
SchI GAGTC 3 cut(s) 194, 503, 584
ScrFI CCNGG 4 cut(s) 54, 129, 236, 1040
SduI GDGCHC 3 cut(s) 407, 548, 1224
SfaNI GCATC 2 cut(s) 991, 1054
SfcI CTRYAG 1 cut(s) 342
SfuI TTCGAA 1 cut(s) 725
SinI GGWCC 3 cut(s) 553, 944, 1102
SmiMI CAYNNNNRTG 1 cut(s) 101
SmlI CTYRAG 2 cut(s) 632, 1068
SmoI CTYRAG 2 cut(s) 632, 1068
SspI AATATT 1 cut(s) 881
SspMI CTAG 5 cut(s) 90, 419, 693, 762, 959
StyD4I CCNGG 4 cut(s) 52, 127, 234, 1038
StyI CCWWGG 2 cut(s) 418, 549
TaaI ACNGT 1 cut(s) 722
TaiI ACGT 3 cut(s) 292, 903, 1101
TaqI TCGA 2 cut(s) 698, 725
TatI WGTACW 1 cut(s) 1282
TfiI GAWTC 3 cut(s) 112, 260, 1018
Tru1I TTAA 2 cut(s) 23, 617
Tru9I TTAA 2 cut(s) 23, 617
TseFI GTSAC 2 cut(s) 464, 1026
TseI GCWGC 5 cut(s) 638, 923, 938, 1108, 1135
Tsp45I GTSAC 2 cut(s) 464, 1026
TspDTI ATGAA 6 cut(s) 111, 125, 219, 252, 672, 1296
TspGWI ACGGA 1 cut(s) 1082
VpaK11BI GGWCC 3 cut(s) 553, 944, 1102
XagI CCTNNNNNAGG 1 cut(s) 422
XapI RAATTY 8 cut(s) 19, 34, 333, 379, 431, 487, 526, 1268
XbaI TCTAGA 1 cut(s) 692
XmaJI CCTAGG 1 cut(s) 418
XspI CTAG 5 cut(s) 90, 419, 693, 762, 959
Zsp2I ATGCAT 1 cut(s) 570
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.