Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8056140.1

Orthogroup ID

OG0003733

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 406

Gene Structure 406 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8056140.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 344 bp

atgcaaagcgtggtggcattttttgacaaggcagctgggaatggggctgccggaccatacacagcactagctctacaagcaatttcccgtcattttcgcagtttgcatgatgcaatcaagggccagattcaagcggcacagagaagcctgggagagaaagatactccatcagatgctcaaggagaagtaatacctcgcctccgttacgtggaccagcagctcagacagcagagggcatttcagcagcatggtgtaatgcaacattcttggagacctcaaaggggacttcctgaaagctctgttgcaatccttcgcgcttggctatttgagcacttccttctccc

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0040034 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0048506 GO:0048509 GO:0048510 GO:0050789 GO:0050793 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Homeobox_KN POX

Protein Analysis

115

Amino Acids

12.9

Weight (kDa)

10.13

Isoelectric Point (pI)

39.71

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003733)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G19700 AT1G19700 AT1G19700 AT1G19700 AT1G19700 AT1G75410 AT1G75410 AT1G75410
fragaria_vesca	FvH4_2g39260 FvH4_2g39260 FvH4_2g39260 FvH4_2g39260 FvH4_2g39260
malus_domestica	MD08G1024200.v1.1 MD15G1021800.v1.1
prunus_persica	Prupe.1G373600_v2.0.a1 Prupe.1G373600_v2.0.a1 Prupe.1G373600_v2.0.a1 Prupe.1G373600_v2.0.a1
pyrus_communis	pycom08g01900 pycom15g01810
rosa_chinensis	RchiOBHm_Chr6g0301751
rosa_laevigata	RLG00000011225
rosa_multiflora	Rmu_co8056140.1_g000001 Rmu_sc0005454.1_g000024
rosa_roxburghii	Rroxscaffold_7G00166450
rosa_rugosa	Rorug06G0309000.1 Rorug06G0309100.1 Rorug06G0309200
rosa_samantha	Rh6AG421200 Rh6BG427900 Rh6CG434500 Rh6DG421400
rosa_wichuraiana	Rw6G036460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	315
AciI	CCGC	1 cut(s)	134
AfiI	CCNNNNNNNGG	2 cut(s)	208, 281
AgsI	TTSAA	1 cut(s)	131
AjnI	CCWGG	1 cut(s)	147
AluBI	AGCT	4 cut(s)	35, 71, 220, 297
AluI	AGCT	4 cut(s)	35, 71, 220, 297
Alw21I	GWGCWC	1 cut(s)	333
Alw26I	GTCTC	1 cut(s)	265
AoxI	GGCC	1 cut(s)	121
ApeKI	GCWGC	4 cut(s)	32, 47, 217, 244
AspLEI	GCGC	1 cut(s)	317
AspS9I	GGNCC	3 cut(s)	53, 121, 211
AvaII	GGWCC	2 cut(s)	53, 211
Bbv12I	GWGCWC	1 cut(s)	333
BbvI	GCAGC	4 cut(s)	34, 44, 229, 256
BccI	CCATC	1 cut(s)	175
BciT130I	CCWGG	1 cut(s)	149
BcoDI	GTCTC	1 cut(s)	265
BfaI	CTAG	1 cut(s)	68
BisI	GCNGC	5 cut(s)	33, 48, 135, 218, 245
BlsI	GCNGC	5 cut(s)	34, 49, 136, 219, 246
Bme1390I	CCNGG	1 cut(s)	149
Bme18I	GGWCC	2 cut(s)	53, 211
BmgT120I	GGNCC	3 cut(s)	53, 121, 211
BmrFI	CCNGG	1 cut(s)	149
BmsI	GCATC	2 cut(s)	100, 163
BpuEI	CTTGAG	1 cut(s)	162
BsaAI	YACGTR	1 cut(s)	208
BsaI	GGTCTC	1 cut(s)	265
BsaJI	CCNNGG	1 cut(s)	148
BsaXI	ACNNNNNCTCC	2 cut(s)	183, 213
Bsc4I	CCNNNNNNNGG	2 cut(s)	208, 281
BseBI	CCWGG	1 cut(s)	149
BseDI	CCNNGG	1 cut(s)	148
BseLI	CCNNNNNNNGG	2 cut(s)	208, 281
BseMII	CTCAG	1 cut(s)	235
BseXI	GCAGC	4 cut(s)	34, 44, 229, 256
BseYI	CCCAGC	1 cut(s)	35
Bsh1236I	CGCG	1 cut(s)	315
BshFI	GGCC	1 cut(s)	123
BsiHKAI	GWGCWC	1 cut(s)	333
BsiSI	CCGG	1 cut(s)	51
BslFI	GGGAC	1 cut(s)	297
BslI	CCNNNNNNNGG	2 cut(s)	208, 281
BsmAI	GTCTC	1 cut(s)	265
BsmFI	GGGAC	1 cut(s)	297
BsnI	GGCC	1 cut(s)	123
Bso31I	GGTCTC	1 cut(s)	265
Bsp1286I	GDGCHC	1 cut(s)	333
BspACI	CCGC	1 cut(s)	134
BspANI	GGCC	1 cut(s)	123
BspCNI	CTCAG	1 cut(s)	234
BspFNI	CGCG	1 cut(s)	315
BspTNI	GGTCTC	1 cut(s)	265
BssECI	CCNNGG	1 cut(s)	148
Bst2UI	CCWGG	1 cut(s)	149
BstBAI	YACGTR	1 cut(s)	208
BstDEI	CTNAG	1 cut(s)	221
BstFNI	CGCG	1 cut(s)	315
BstHHI	GCGC	1 cut(s)	317
BstMAI	GTCTC	1 cut(s)	265
BstMWI	GCNNNNNNNGC	3 cut(s)	77, 226, 328
BstNI	CCWGG	1 cut(s)	149
BstSCI	CCNGG	1 cut(s)	147
BstUI	CGCG	1 cut(s)	315
BstV1I	GCAGC	4 cut(s)	34, 44, 229, 256
BsuRI	GGCC	1 cut(s)	123
CfoI	GCGC	1 cut(s)	317
Cfr13I	GGNCC	3 cut(s)	53, 121, 211
CviAII	CATG	2 cut(s)	107, 248
CviJI	RGCY	8 cut(s)	35, 47, 71, 123, 147, 220, 297, 322
CviKI_1	RGCY	8 cut(s)	35, 47, 71, 123, 147, 220, 297, 322
DdeI	CTNAG	1 cut(s)	221
Eco31I	GGTCTC	1 cut(s)	265
Eco47I	GGWCC	2 cut(s)	53, 211
EcoRII	CCWGG	1 cut(s)	147
FaeI	CATG	2 cut(s)	110, 251
FaiI	YATR	3 cut(s)	58, 108, 249
FaqI	GGGAC	1 cut(s)	297
FatI	CATG	2 cut(s)	106, 247
Fnu4HI	GCNGC	5 cut(s)	33, 48, 135, 218, 245
Fsp4HI	GCNGC	5 cut(s)	33, 48, 135, 218, 245
FspBI	CTAG	1 cut(s)	68
GlaI	GCGC	1 cut(s)	316
GluI	GCNGC	5 cut(s)	33, 48, 135, 218, 245
GsaI	CCCAGC	1 cut(s)	39
HaeIII	GGCC	1 cut(s)	123
HapII	CCGG	1 cut(s)	51
HhaI	GCGC	1 cut(s)	317
Hin1II	CATG	2 cut(s)	110, 251
Hin6I	GCGC	1 cut(s)	315
HinP1I	GCGC	1 cut(s)	315
HinfI	GANTC	1 cut(s)	127
HpaII	CCGG	1 cut(s)	51
Hpy166II	GTNNAC	1 cut(s)	211
Hpy188I	TCNGA	2 cut(s)	172, 224
Hpy188III	TCNNGA	1 cut(s)	290
Hpy8I	GTNNAC	1 cut(s)	211
HpyAV	CCTTC	1 cut(s)	320
HpyCH4IV	ACGT	1 cut(s)	207
HpyCH4V	TGCA	5 cut(s)	4, 106, 113, 259, 305
HpyF10VI	GCNNNNNNNGC	3 cut(s)	77, 226, 328
HpyF3I	CTNAG	1 cut(s)	221
HpySE526I	ACGT	1 cut(s)	207
Hsp92II	CATG	2 cut(s)	110, 251
HspAI	GCGC	1 cut(s)	315
LpnPI	CCDG	7 cut(s)	21, 64, 134, 137, 161, 227, 303
Lsp1109I	GCAGC	4 cut(s)	34, 44, 229, 256
LweI	GCATC	2 cut(s)	100, 163
MaeI	CTAG	1 cut(s)	68
MaeII	ACGT	1 cut(s)	207
MaeIII	GTNAC	1 cut(s)	203
MhlI	GDGCHC	1 cut(s)	333
MluCI	AATT	1 cut(s)	81
MnlI	CCTC	4 cut(s)	204, 209, 225, 285
MspA1I	CMGCKG	1 cut(s)	35
MspI	CCGG	1 cut(s)	51
MspR9I	CCNGG	1 cut(s)	149
MvaI	CCWGG	1 cut(s)	149
MvnI	CGCG	1 cut(s)	315
MwoI	GCNNNNNNNGC	3 cut(s)	77, 226, 328
NlaIII	CATG	2 cut(s)	110, 251
PfeI	GAWTC	1 cut(s)	127
PkrI	GCNGC	5 cut(s)	34, 49, 136, 219, 246
Ppu21I	YACGTR	1 cut(s)	208
Psp6I	CCWGG	1 cut(s)	147
PspFI	CCCAGC	1 cut(s)	35
PspGI	CCWGG	1 cut(s)	147
PspPI	GGNCC	3 cut(s)	53, 121, 211
PvuII	CAGCTG	1 cut(s)	35
SatI	GCNGC	5 cut(s)	33, 48, 135, 218, 245
Sau96I	GGNCC	3 cut(s)	53, 121, 211
ScrFI	CCNGG	1 cut(s)	149
SduI	GDGCHC	1 cut(s)	333
SetI	ASST	7 cut(s)	37, 73, 196, 210, 222, 277, 299
SfaNI	GCATC	2 cut(s)	100, 163
SinI	GGWCC	2 cut(s)	53, 211
SmlI	CTYRAG	1 cut(s)	177
SmoI	CTYRAG	1 cut(s)	177
Sse9I	AATT	1 cut(s)	81
SsiI	CCGC	1 cut(s)	134
SspMI	CTAG	1 cut(s)	68
StyD4I	CCNGG	1 cut(s)	147
TaiI	ACGT	1 cut(s)	210
TasI	AATT	1 cut(s)	81
TauI	GCSGC	1 cut(s)	137
TfiI	GAWTC	1 cut(s)	127
TseI	GCWGC	4 cut(s)	32, 47, 217, 244
TspGWI	ACGGA	1 cut(s)	191
VpaK11BI	GGWCC	2 cut(s)	53, 211
XspI	CTAG	1 cut(s)	68

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.