Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0003733

Physical Location & Seq

Genomic Coordinates Forward (+)

46057834 .. 46059231

Gene Structure 1398 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0309200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1011 bp

ATGGCAGATGCAGACTACATGGTAGAAAAAGAAAAAGAACTGTATGCGTTTGATGACCTTAAAATAGGTGTCAAAGGGCTCTCAGACTCCGGCGTGGCCAAGATTCCCAGAATCTTCATCCACCCACCGGAGACTGTAAAGAACACAGCACCAGATGATGGTGTCAAACTTCAAATCCCAATTGTTGATCTCAGATGCATTGCCAATGATCACGCTCGAGAAGGAATAGTGAAGGCAATTAAAGATGCATGTGAAACATGGGGGTTCTTTCAGATAGTCAACCATGGAGTTCCACTTGGCACTTGCTGTTATGGAGGAGATGCTTCAAGATTTGAAAGTGCGTGCAAAATCAGCAGCAGATTGGAGAAGGTGTCCTGCAGAGCCGCAGATGATAAATGGGACTTTGAAGCACTGCCTCAAGTGTGCAGACGAGAAATAAGTGAGTACATCAAAAACTTGATTGAACTTCAGAATGTGCTATCCGAATTACTATCGGAAGCATTAGGGCTTAGCAAGGATCACCTAGCACGCATGGGGTGCTTGAAAGCTTTCTCATTATCATGCTTCTATTATCCAATTTGCCCCGAGCCTGAACTGACTCTAGGCACAATCAAACACTCAGATCCCTCATTTCTTACCTTAGTCCTGCAAGACGAGATTGGAGGGCTCCAAGTTCTCCATAAGGATCAATGGGTTGACGTGCCGCCAGTGGATGGAGCATTTGTAGCAAATCTAGGTGACCTTATGCAGCTCGTTACTAATAACAAGTTCAAGAGTGTGGAACATAGAGTGCTAGCTACCCCGCTTGTCAAGCCACGAATATCAGTTGCATCTTTCTTTGCTCCTATGGATAGCGACAAACGTGTCAAGCCATACGGGCCTATAAAGGAGCTTCTATCTGAGAACAATCCCCCAATATACAGGGACACCCTTTACGGAGAATATACTGGGTATTATAGAGTTAATGGACAAAATGGCAGTTCTGCCCTGCCTAATTTCAGACTGCATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0040034 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0048506 GO:0048509 GO:0048510 GO:0050789 GO:0050793 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Homeobox_KN POX

Protein Analysis

336

Amino Acids

37.44

Weight (kDa)

5.68

Isoelectric Point (pI)

30.48

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DIOX_N	PF14226	59 - 99	1.2e-10	non-haem dioxygenase in morphine synthesis N-terminal
2OG-FeII_Oxy	PF03171	187 - 282	8e-31	2OG-Fe(II) oxygenase superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003733)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G19700 AT1G19700 AT1G19700 AT1G19700 AT1G19700 AT1G75410 AT1G75410 AT1G75410
fragaria_vesca	FvH4_2g39260 FvH4_2g39260 FvH4_2g39260 FvH4_2g39260 FvH4_2g39260
malus_domestica	MD08G1024200.v1.1 MD15G1021800.v1.1
prunus_persica	Prupe.1G373600_v2.0.a1 Prupe.1G373600_v2.0.a1 Prupe.1G373600_v2.0.a1 Prupe.1G373600_v2.0.a1
pyrus_communis	pycom08g01900 pycom15g01810
rosa_chinensis	RchiOBHm_Chr6g0301751
rosa_laevigata	RLG00000011225
rosa_multiflora	Rmu_co8056140.1_g000001 Rmu_sc0005454.1_g000024
rosa_roxburghii	Rroxscaffold_7G00166450
rosa_rugosa	Rorug06G0309000.1 Rorug06G0309100.1 Rorug06G0309200
rosa_samantha	Rh6AG421200 Rh6BG427900 Rh6CG434500 Rh6DG421400
rosa_wichuraiana	Rw6G036460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	863
AccB7I	CCANNNNNTGG	2 cut(s)	158, 713
AciI	CCGC	3 cut(s)	384, 704, 803
AclWI	GGATC	3 cut(s)	525, 617, 693
AcoI	YGGCCR	1 cut(s)	96
AcuI	CTGAAG	1 cut(s)	452
AfaI	GTAC	1 cut(s)	446
AfiI	CCNNNNNNNGG	3 cut(s)	127, 158, 713
AflIII	ACRYGT	1 cut(s)	862
AgsI	TTSAA	7 cut(s)	173, 327, 335, 407, 464, 544, 772
AjiI	CACGTC	1 cut(s)	700
AluBI	AGCT	4 cut(s)	548, 751, 797, 892
AluI	AGCT	4 cut(s)	548, 751, 797, 892
Alw26I	GTCTC	1 cut(s)	125
AlwI	GGATC	3 cut(s)	525, 617, 693
Ama87I	CYCGRG	2 cut(s)	216, 584
AoxI	GGCC	2 cut(s)	96, 878
ApeKI	GCWGC	2 cut(s)	354, 748
Asp700I	GAANNNNTTC	1 cut(s)	548
AspS9I	GGNCC	1 cut(s)	878
AsuHPI	GGTGA	2 cut(s)	512, 749
AsuNHI	GCTAGC	1 cut(s)	793
AvaI	CYCGRG	2 cut(s)	216, 584
BalI	TGGCCA	1 cut(s)	98
BanII	GRGCYC	2 cut(s)	81, 669
BbvI	GCAGC	2 cut(s)	366, 760
BccI	CCATC	2 cut(s)	152, 707
BclI	TGATCA	1 cut(s)	208
BcoDI	GTCTC	1 cut(s)	125
BfaI	CTAG	4 cut(s)	524, 602, 734, 794
BfmI	CTRYAG	1 cut(s)	376
BglI	GCCNNNNNGGC	1 cut(s)	877
BisI	GCNGC	4 cut(s)	355, 384, 704, 749
BlpI	GCTNAGC	1 cut(s)	509
BlsI	GCNGC	4 cut(s)	356, 385, 705, 750
BmeT110I	CYCGRG	2 cut(s)	216, 584
BmgBI	CACGTC	1 cut(s)	700
BmgT120I	GGNCC	1 cut(s)	878
BmiI	GGNNCC	1 cut(s)	668
BmrI	ACTGGG	1 cut(s)	957
BmsI	GCATC	4 cut(s)	185, 235, 310, 839
BmtI	GCTAGC	1 cut(s)	797
BmuI	ACTGGG	1 cut(s)	957
Bpu1102I	GCTNAGC	1 cut(s)	509
BpuEI	CTTGAG	1 cut(s)	402
BsaJI	CCNNGG	1 cut(s)	283
BsaWI	WCCGGW	1 cut(s)	127
BsaXI	ACNNNNNCTCC	4 cut(s)	356, 386, 708, 738
Bsc4I	CCNNNNNNNGG	3 cut(s)	127, 158, 713
Bse1I	ACTGG	2 cut(s)	707, 952
Bse3DI	GCAATG	1 cut(s)	198
BseDI	CCNNGG	1 cut(s)	283
BseGI	GGATG	2 cut(s)	117, 718
BseLI	CCNNNNNNNGG	3 cut(s)	127, 158, 713
BseMI	GCAATG	1 cut(s)	198
BseMII	CTCAG	4 cut(s)	96, 205, 633, 891
BseNI	ACTGG	2 cut(s)	707, 952
BseRI	GAGGAG	1 cut(s)	330
BseXI	GCAGC	2 cut(s)	366, 760
BsgI	GTGCAG	1 cut(s)	445
BshFI	GGCC	2 cut(s)	98, 880
BsiHKCI	CYCGRG	2 cut(s)	216, 584
BsiSI	CCGG	2 cut(s)	90, 128
BslFI	GGGAC	2 cut(s)	413, 938
BslI	CCNNNNNNNGG	3 cut(s)	127, 158, 713
BsmAI	GTCTC	1 cut(s)	125
BsmFI	GGGAC	2 cut(s)	413, 938
BsnI	GGCC	2 cut(s)	98, 880
BsoBI	CYCGRG	2 cut(s)	216, 584
Bsp1286I	GDGCHC	2 cut(s)	81, 669
Bsp143I	GATC	5 cut(s)	187, 208, 517, 622, 685
Bsp1720I	GCTNAGC	1 cut(s)	509
Bsp19I	CCATGG	1 cut(s)	283
BspACI	CCGC	3 cut(s)	384, 704, 803
BspANI	GGCC	2 cut(s)	98, 880
BspCNI	CTCAG	4 cut(s)	95, 204, 632, 892
BspLI	GGNNCC	1 cut(s)	668
BspMAI	CTGCAG	1 cut(s)	380
BspOI	GCTAGC	1 cut(s)	797
BspPI	GGATC	3 cut(s)	525, 617, 693
BsrDI	GCAATG	1 cut(s)	198
BsrI	ACTGG	2 cut(s)	707, 952
BssECI	CCNNGG	1 cut(s)	283
BssMI	GATC	5 cut(s)	187, 208, 517, 622, 685
BssT1I	CCWWGG	1 cut(s)	283
Bst4CI	ACNGT	2 cut(s)	42, 136
BstAPI	GCANNNNNTGC	1 cut(s)	537
BstC8I	GCNNGC	3 cut(s)	343, 529, 795
BstDEI	CTNAG	6 cut(s)	82, 191, 509, 619, 640, 900
BstDSI	CCRYGG	1 cut(s)	283
BstEII	GGTNACC	1 cut(s)	737
BstF5I	GGATG	2 cut(s)	117, 718
BstKTI	GATC	5 cut(s)	190, 211, 520, 625, 688
BstMAI	GTCTC	1 cut(s)	125
BstMBI	GATC	5 cut(s)	187, 208, 517, 622, 685
BstMWI	GCNNNNNNNGC	5 cut(s)	351, 537, 725, 811, 877
BstNSI	RCATGY	1 cut(s)	252
BstPI	GGTNACC	1 cut(s)	737
BstSFI	CTRYAG	1 cut(s)	376
BstV1I	GCAGC	2 cut(s)	366, 760
BstX2I	RGATCY	1 cut(s)	622
BstYI	RGATCY	1 cut(s)	622
BsuRI	GGCC	2 cut(s)	98, 880
BtgI	CCRYGG	1 cut(s)	283
BtrI	CACGTC	1 cut(s)	700
BtsCI	GGATG	2 cut(s)	117, 718
BtsI	GCAGTG	1 cut(s)	410
BtsIMutI	CAGTG	2 cut(s)	410, 714
Cac8I	GCNNGC	3 cut(s)	343, 529, 795
Cfr13I	GGNCC	1 cut(s)	878
Csp6I	GTAC	1 cut(s)	445
CviAII	CATG	6 cut(s)	19, 249, 258, 284, 532, 561
CviQI	GTAC	1 cut(s)	445
DdeI	CTNAG	6 cut(s)	82, 191, 509, 619, 640, 900
DpnI	GATC	5 cut(s)	189, 210, 519, 624, 687
DpnII	GATC	5 cut(s)	187, 208, 517, 622, 685
DrdI	GACNNNNNNGTC	1 cut(s)	863
DseDI	GACNNNNNNGTC	1 cut(s)	863
EaeI	YGGCCR	1 cut(s)	96
Eco130I	CCWWGG	1 cut(s)	283
Eco24I	GRGCYC	2 cut(s)	81, 669
Eco57I	CTGAAG	1 cut(s)	452
Eco88I	CYCGRG	2 cut(s)	216, 584
Eco91I	GGTNACC	1 cut(s)	737
EcoO65I	GGTNACC	1 cut(s)	737
EcoT14I	CCWWGG	1 cut(s)	283
EcoT22I	ATGCAT	2 cut(s)	200, 250
EcoT38I	GRGCYC	2 cut(s)	81, 669
ErhI	CCWWGG	1 cut(s)	283
FaeI	CATG	6 cut(s)	22, 252, 261, 287, 535, 564
FaqI	GGGAC	2 cut(s)	413, 938
FatI	CATG	6 cut(s)	18, 248, 257, 283, 531, 560
FauI	CCCGC	1 cut(s)	810
FbaI	TGATCA	1 cut(s)	208
Fnu4HI	GCNGC	4 cut(s)	355, 384, 704, 749
FokI	GGATG	2 cut(s)	104, 725
FriOI	GRGCYC	2 cut(s)	81, 669
Fsp4HI	GCNGC	4 cut(s)	355, 384, 704, 749
FspBI	CTAG	4 cut(s)	524, 602, 734, 794
GluI	GCNGC	4 cut(s)	355, 384, 704, 749
HaeIII	GGCC	2 cut(s)	98, 880
HapII	CCGG	2 cut(s)	90, 128
Hin1II	CATG	6 cut(s)	22, 252, 261, 287, 535, 564
HincII	GTYRAC	2 cut(s)	280, 697
HindII	GTYRAC	2 cut(s)	280, 697
HindIII	AAGCTT	1 cut(s)	546
HinfI	GANTC	4 cut(s)	86, 103, 111, 598
HpaII	CCGG	2 cut(s)	90, 128
HphI	GGTGA	2 cut(s)	512, 749
Hpy166II	GTNNAC	2 cut(s)	280, 697
Hpy188I	TCNGA	9 cut(s)	85, 194, 273, 471, 484, 496, 622, 901, 1001
Hpy188III	TCNNGA	3 cut(s)	218, 327, 772
Hpy8I	GTNNAC	2 cut(s)	280, 697
HpyAV	CCTTC	3 cut(s)	215, 226, 361
HpyCH4III	ACNGT	2 cut(s)	42, 136
HpyCH4IV	ACGT	2 cut(s)	699, 862
HpyF10VI	GCNNNNNNNGC	5 cut(s)	351, 537, 725, 811, 877
HpyF3I	CTNAG	6 cut(s)	82, 191, 509, 619, 640, 900
HpySE526I	ACGT	2 cut(s)	699, 862
Hsp92II	CATG	6 cut(s)	22, 252, 261, 287, 535, 564
Ksp22I	TGATCA	1 cut(s)	208
Kzo9I	GATC	5 cut(s)	187, 208, 517, 622, 685
LmnI	GCTCC	4 cut(s)	672, 716, 847, 889
Lsp1109I	GCAGC	2 cut(s)	366, 760
LweI	GCATC	4 cut(s)	185, 235, 310, 839
MaeI	CTAG	4 cut(s)	524, 602, 734, 794
MaeII	ACGT	2 cut(s)	699, 862
MaeIII	GTNAC	2 cut(s)	737, 754
MalI	GATC	5 cut(s)	189, 210, 519, 624, 687
MboI	GATC	5 cut(s)	187, 208, 517, 622, 685
MboII	GAAGA	1 cut(s)	106
MfeI	CAATTG	1 cut(s)	180
MflI	RGATCY	1 cut(s)	622
MhlI	GDGCHC	2 cut(s)	81, 669
MlsI	TGGCCA	1 cut(s)	98
MluCI	AATT	5 cut(s)	180, 237, 485, 576, 994
MluNI	TGGCCA	1 cut(s)	98
MlyI	GAGTC	2 cut(s)	80, 592
MnlI	CCTC	4 cut(s)	308, 426, 637, 656
Mox20I	TGGCCA	1 cut(s)	98
Mph1103I	ATGCAT	2 cut(s)	200, 250
MroXI	GAANNNNTTC	1 cut(s)	548
MscI	TGGCCA	1 cut(s)	98
MseI	TTAA	3 cut(s)	60, 240, 963
MslI	CAYNNNNRTG	1 cut(s)	559
Msp20I	TGGCCA	1 cut(s)	98
MspI	CCGG	2 cut(s)	90, 128
MunI	CAATTG	1 cut(s)	180
MwoI	GCNNNNNNNGC	5 cut(s)	351, 537, 725, 811, 877
NcoI	CCATGG	1 cut(s)	283
NdeII	GATC	5 cut(s)	187, 208, 517, 622, 685
NheI	GCTAGC	1 cut(s)	793
NlaIII	CATG	6 cut(s)	22, 252, 261, 287, 535, 564
NlaIV	GGNNCC	1 cut(s)	668
NmuCI	GTSAC	1 cut(s)	737
NsiI	ATGCAT	2 cut(s)	200, 250
NspI	RCATGY	1 cut(s)	252
PaeR7I	CTCGAG	1 cut(s)	216
PdmI	GAANNNNTTC	1 cut(s)	548
PfeI	GAWTC	2 cut(s)	103, 111
PflMI	CCANNNNNTGG	2 cut(s)	158, 713
PkrI	GCNGC	4 cut(s)	356, 385, 705, 750
PleI	GAGTC	2 cut(s)	80, 592
PpsI	GAGTC	2 cut(s)	80, 592
PspEI	GGTNACC	1 cut(s)	737
PspN4I	GGNNCC	1 cut(s)	668
PspPI	GGNCC	1 cut(s)	878
PstI	CTGCAG	1 cut(s)	380
PsuI	RGATCY	1 cut(s)	622
RsaI	GTAC	1 cut(s)	446
RsaNI	GTAC	1 cut(s)	445
RseI	CAYNNNNRTG	1 cut(s)	559
SaqAI	TTAA	3 cut(s)	60, 240, 963
SatI	GCNGC	4 cut(s)	355, 384, 704, 749
Sau3AI	GATC	5 cut(s)	187, 208, 517, 622, 685
Sau96I	GGNCC	1 cut(s)	878
SchI	GAGTC	2 cut(s)	80, 592
SduI	GDGCHC	2 cut(s)	81, 669
SfaNI	GCATC	4 cut(s)	185, 235, 310, 839
SfcI	CTRYAG	1 cut(s)	376
Sfr274I	CTCGAG	1 cut(s)	216
SlaI	CTCGAG	1 cut(s)	216
SmiMI	CAYNNNNRTG	1 cut(s)	559
SmlI	CTYRAG	2 cut(s)	216, 417
SmoI	CTYRAG	2 cut(s)	216, 417
Sse9I	AATT	5 cut(s)	180, 237, 485, 576, 994
SsiI	CCGC	3 cut(s)	384, 704, 803
SspMI	CTAG	4 cut(s)	524, 602, 734, 794
StyI	CCWWGG	1 cut(s)	283
TaaI	ACNGT	2 cut(s)	42, 136
TaiI	ACGT	2 cut(s)	702, 865
TaqI	TCGA	1 cut(s)	217
TasI	AATT	5 cut(s)	180, 237, 485, 576, 994
TatI	WGTACW	1 cut(s)	444
TauI	GCSGC	2 cut(s)	386, 706
TfiI	GAWTC	2 cut(s)	103, 111
Tru1I	TTAA	3 cut(s)	60, 240, 963
Tru9I	TTAA	3 cut(s)	60, 240, 963
TscAI	CASTG	2 cut(s)	417, 714
TseFI	GTSAC	1 cut(s)	737
TseI	GCWGC	2 cut(s)	354, 748
Tsp45I	GTSAC	1 cut(s)	737
TspDTI	ATGAA	1 cut(s)	106
TspGWI	ACGGA	1 cut(s)	951
TspRI	CASTG	2 cut(s)	417, 714
Van91I	CCANNNNNTGG	2 cut(s)	158, 713
XceI	RCATGY	1 cut(s)	252
XhoI	CTCGAG	1 cut(s)	216
XmnI	GAANNNNTTC	1 cut(s)	548
XspI	CTAG	4 cut(s)	524, 602, 734, 794
Zsp2I	ATGCAT	2 cut(s)	200, 250

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.