Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr08

Orthogroup ID

OG0003733

Physical Location & Seq

Genomic Coordinates Forward (+)

1743366 .. 1747076

Gene Structure 3711 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD08G1024200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1773 bp

ATGGCTACCTATTTCCAAAATTTGAGTAATCAAAACTTACTGAACCCTTATCAAGGGGACGAGAAACTTCCCTCGTACCCCGAACCGCCCGGAAACATGATGATGTATCTGAATCAGGCTTCCTATGGCGCCGGATCCTACTCCGAGGTCTTGTCCGGCGGCAACTTCTCCCCTCAGAAATATGCTGACTCTGATGGGGGCAGGAGTGAAATGATGTTTATACCGCCAACGAGTGATCCAGTCAGGGACTGTGACGTTGGCGGCGAGTCCTTGATTGGGAAACATAGTATGCAGGATCATGGATTGTCTCTTAGCCTTTCCACCCAAATTCCGCAACCAGTTTCTCTGCCTTCGTTTCAGTACCAATATCCGAATTCAAGTCTCTCTTCGGTTTTGAGCAATGCTCCAATGATAGGGAAGGGTGAGGAGTACAATCAGAGCGAGGAGTTTAGAAACTTCGAAAGCTTGGCATCGGGGTTATATGGAGGCGGCCATGAGGCTGTCAAAACACAGGCTTTCTACAATCCTATGTGTTCATCGGGATCCAAAGAAATGCATTCGGAATATGCGTATGACTCGCTAGGTTCCACGAACGCTATGTTAAGCTCTAAGTACCTCAAGGCCGCGCAACAGTTGCTTGATGAAGTGGTCAATGTCAAAAAGGCTTTGAAGCAATCTCGATTGGACAAGAACCAAAGCTTTAAGCGGAGCGGATCAGATGGTTCCAAAGAGACTGATGGGAATGATCAACATTTACGGAGGTCATCAGATCCTGTTGAATCGAGCACCATTTCTTCTGTCGAGTTATCAGCAGCAGAACGGCAGGATTTGCAGAACAAGAAGACCAAACTTTTATCCATGTTGGATGAGGTAGATAGAAGGTACAAACAATATTACCATCAAATGCAAGCTGTGGTGTCATTTTTTGACAAGGTGGCTGGGAACGGGGCTGCTGGACCGTACACTGCACTTGCTCTCCAAGCAATTTCCCGTCAGTTTCGCAGTTTGCGTGATTCAATCAAGGGCCAAATTCAAGTGACGCGGAAAAGACTGGGAGAGCAAGATAATTCATCGGATGGTCAAGGATCAGTAATACCCCGCCTCCGCTACGTGGACCAGCAACTCAGACAGCAGAGGGCGTTTCAGCAGCTTGGTGGATTGCAGCATGCTTGGAGGCCTCAAAGAGGACTTCCGGAAAGCTCTGTTTCAATCCTTCGTGCTTGGCTGTTCGAACATTTCCTTCTTCCCTACCCAAAGGATTCAGAAAAGATTATGCTTGCAAGGCAGACAGGATTAACGAGAAACCAGGTTGCCAACTGGTTTATCAATGCAAGGGTACGGCTTTGGAAGCCCATGATTGAGGAAATGTACAAAGAAGAATTCGGTGATTTGGACACGGATGCGAAATCTTCACCAGAAAATGCACTCAAAGAAGAAGCAAGAGTCGATTTCTCAGCATCGGAGGACAGGAAAGTGGAGTTGCACGAAAGCCTGATATCCGCAACTGCTGACAGCATTGAACCAGGGCAAATGCATGACTCGAAGTCGGGTCACAGTTCCACATATGACATGCCAGGGTTGGATCATTTCACGGTTGGCAACGACGTGTCACTTGCATTGGAGTTGCGGCATTGCGAAGAGCACGATGGATTTCCTCCATCAACCGGATCCCATGTAACAGGTAGCGATGCGGCAGCTTCTTTGGATTGTCACTATGAGGATCCAGAGCAGCAACATTTGATTCAGATATGGCAATACCCACGCGTTACTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0040034 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0048506 GO:0048509 GO:0048510 GO:0050789 GO:0050793 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Homeobox_KN POX

Protein Analysis

591

Amino Acids

65.87

Weight (kDa)

5.51

Isoelectric Point (pI)

51.73

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
POX	PF07526	200 - 340	1.3e-48	Associated with HOX
Homeobox_KN	PF05920	408 - 447	6.7e-18	Homeobox KN domain
Homeodomain	PF00046	416 - 447	2e-06	Homeodomain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003733)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G19700 AT1G19700 AT1G19700 AT1G19700 AT1G19700 AT1G75410 AT1G75410 AT1G75410
fragaria_vesca	FvH4_2g39260 FvH4_2g39260 FvH4_2g39260 FvH4_2g39260 FvH4_2g39260
malus_domestica	MD08G1024200.v1.1 MD15G1021800.v1.1
prunus_persica	Prupe.1G373600_v2.0.a1 Prupe.1G373600_v2.0.a1 Prupe.1G373600_v2.0.a1 Prupe.1G373600_v2.0.a1
pyrus_communis	pycom08g01900 pycom15g01810
rosa_chinensis	RchiOBHm_Chr6g0301751
rosa_laevigata	RLG00000011225
rosa_multiflora	Rmu_co8056140.1_g000001 Rmu_sc0005454.1_g000024
rosa_roxburghii	Rroxscaffold_7G00166450
rosa_rugosa	Rorug06G0309000.1 Rorug06G0309100.1 Rorug06G0309200
rosa_samantha	Rh6AG421200 Rh6BG427900 Rh6CG434500 Rh6DG421400
rosa_wichuraiana	Rw6G036460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	128
AccBSI	CCGCTC	1 cut(s)	711
AccII	CGCG	3 cut(s)	626, 1042, 1764
AccIII	TCCGGA	1 cut(s)	1192
AcoI	YGGCCR	1 cut(s)	490
AcsI	RAATTY	5 cut(s)	19, 327, 373, 1029, 1379
AcyI	GRCGYC	1 cut(s)	129
AfaI	GTAC	8 cut(s)	77, 362, 431, 614, 884, 962, 1338, 1370
AfiI	CCNNNNNNNGG	6 cut(s)	53, 276, 413, 1111, 1184, 1664
AflIII	ACRYGT	2 cut(s)	1605, 1762
AgsI	TTSAA	7 cut(s)	378, 670, 779, 1017, 1034, 1209, 1520
AhdI	GACNNNNNGTC	1 cut(s)	1543
AjiI	CACGTC	1 cut(s)	1606
AjnI	CCWGG	3 cut(s)	1305, 1522, 1573
AluBI	AGCT	7 cut(s)	465, 606, 699, 911, 1150, 1200, 1697
AluI	AGCT	7 cut(s)	465, 606, 699, 911, 1150, 1200, 1697
Alw21I	GWGCWC	2 cut(s)	788, 1644
Alw26I	GTCTC	3 cut(s)	312, 386, 725
AlwNI	CAGNNNCTG	2 cut(s)	249, 773
Aor13HI	TCCGGA	1 cut(s)	1192
AoxI	GGCC	4 cut(s)	490, 621, 1024, 1175
ApeKI	GCWGC	6 cut(s)	812, 950, 1147, 1162, 1694, 1729
ApoI	RAATTY	5 cut(s)	19, 327, 373, 1029, 1379
AspLEI	GCGC	2 cut(s)	131, 628
AspS9I	GGNCC	3 cut(s)	956, 1024, 1114
AsuC2I	CCSGG	1 cut(s)	90
AsuHPI	GGTGA	3 cut(s)	434, 1397, 1404
AsuII	TTCGAA	2 cut(s)	459, 1230
AvaII	GGWCC	2 cut(s)	956, 1114
BamHI	GGATCC	4 cut(s)	134, 542, 1667, 1720
BanI	GGYRCC	1 cut(s)	128
BbsI	GAAGAC	1 cut(s)	848
Bbv12I	GWGCWC	2 cut(s)	788, 1644
BbvI	GCAGC	6 cut(s)	824, 937, 1159, 1174, 1706, 1741
BccI	CCATC	7 cut(s)	188, 713, 731, 906, 1070, 1640, 1666
BceAI	ACGGC	2 cut(s)	836, 1355
BciT130I	CCWGG	3 cut(s)	1307, 1524, 1575
BclI	TGATCA	1 cut(s)	745
BcnI	CCSGG	1 cut(s)	90
BcoDI	GTCTC	3 cut(s)	312, 386, 725
BfaI	CTAG	1 cut(s)	581
BfoI	RGCGCY	1 cut(s)	132
Bme1390I	CCNGG	4 cut(s)	90, 1307, 1524, 1575
Bme18I	GGWCC	2 cut(s)	956, 1114
BmeRI	GACNNNNNGTC	1 cut(s)	1543
BmgBI	CACGTC	1 cut(s)	1606
BmgT120I	GGNCC	3 cut(s)	956, 1024, 1114
BmiI	GGNNCC	7 cut(s)	130, 136, 544, 586, 724, 1669, 1722
BmrFI	CCNGG	4 cut(s)	90, 1307, 1524, 1575
BmrI	ACTGGG	1 cut(s)	1061
BmsI	GCATC	4 cut(s)	479, 1390, 1466, 1678
BmuI	ACTGGG	1 cut(s)	1061
BpiI	GAAGAC	1 cut(s)	848
BplI	GAGNNNNNCTC	2 cut(s)	388, 420
Bpu14I	TTCGAA	2 cut(s)	459, 1230
BpuEI	CTTGAG	1 cut(s)	602
BpuMI	CCSGG	1 cut(s)	90
BsaAI	YACGTR	1 cut(s)	1111
BsaHI	GRCGYC	1 cut(s)	129
BsaJI	CCNNGG	3 cut(s)	144, 1523, 1574
BsaWI	WCCGGW	2 cut(s)	1192, 1664
BsaXI	ACNNNNNCTCC	4 cut(s)	960, 990, 1086, 1116
Bsc4I	CCNNNNNNNGG	6 cut(s)	53, 276, 413, 1111, 1184, 1664
Bse1I	ACTGG	4 cut(s)	239, 338, 1056, 1322
Bse3DI	GCAATG	2 cut(s)	406, 1630
BseAI	TCCGGA	1 cut(s)	1192
BseBI	CCWGG	3 cut(s)	1307, 1524, 1575
BseDI	CCNNGG	3 cut(s)	144, 1523, 1574
BseGI	GGATG	3 cut(s)	871, 1081, 1405
BseLI	CCNNNNNNNGG	6 cut(s)	53, 276, 413, 1111, 1184, 1664
BseMI	GCAATG	2 cut(s)	406, 1630
BseMII	CTCAG	3 cut(s)	188, 1138, 1467
BseNI	ACTGG	4 cut(s)	239, 338, 1056, 1322
BseRI	GAGGAG	2 cut(s)	440, 458
BseXI	GCAGC	6 cut(s)	824, 937, 1159, 1174, 1706, 1741
BseYI	CCCAGC	1 cut(s)	938
BsgI	GTGCAG	1 cut(s)	951
Bsh1236I	CGCG	3 cut(s)	626, 1042, 1764
BshFI	GGCC	4 cut(s)	492, 623, 1026, 1177
BshNI	GGYRCC	1 cut(s)	128
BsiHKAI	GWGCWC	2 cut(s)	788, 1644
BsiSI	CCGG	5 cut(s)	90, 132, 156, 1193, 1665
BslFI	GGGAC	2 cut(s)	71, 260
BslI	CCNNNNNNNGG	6 cut(s)	53, 276, 413, 1111, 1184, 1664
BsmAI	GTCTC	3 cut(s)	312, 386, 725
BsmFI	GGGAC	2 cut(s)	71, 260
BsmI	GAATGC	1 cut(s)	556
BsnI	GGCC	4 cut(s)	492, 623, 1026, 1177
Bsp119I	TTCGAA	2 cut(s)	459, 1230
Bsp1286I	GDGCHC	2 cut(s)	788, 1644
Bsp13I	TCCGGA	1 cut(s)	1192
Bsp1407I	TGTACA	1 cut(s)	1368
BspANI	GGCC	4 cut(s)	492, 623, 1026, 1177
BspCNI	CTCAG	3 cut(s)	187, 1137, 1466
BspEI	TCCGGA	1 cut(s)	1192
BspFNI	CGCG	3 cut(s)	626, 1042, 1764
BspLI	GGNNCC	7 cut(s)	130, 136, 544, 586, 724, 1669, 1722
BspQI	GCTCTTC	1 cut(s)	1632
BspT104I	TTCGAA	2 cut(s)	459, 1230
BspT107I	GGYRCC	1 cut(s)	128
BsrBI	CCGCTC	1 cut(s)	711
BsrDI	GCAATG	2 cut(s)	406, 1630
BsrGI	TGTACA	1 cut(s)	1368
BsrI	ACTGG	4 cut(s)	239, 338, 1056, 1322
BssECI	CCNNGG	3 cut(s)	144, 1523, 1574
BssNI	GRCGYC	1 cut(s)	129
Bst2UI	CCWGG	3 cut(s)	1307, 1524, 1575
Bst4CI	ACNGT	5 cut(s)	251, 633, 960, 1556, 1594
Bst6I	CTCTTC	2 cut(s)	391, 1632
BstACI	GRCGYC	1 cut(s)	129
BstAPI	GCANNNNNTGC	2 cut(s)	634, 829
BstAUI	TGTACA	1 cut(s)	1368
BstBAI	YACGTR	1 cut(s)	1111
BstBI	TTCGAA	2 cut(s)	459, 1230
BstC8I	GCNNGC	3 cut(s)	909, 1167, 1278
BstDEI	CTNAG	5 cut(s)	174, 311, 609, 1124, 1453
BstENI	CCTNNNNNAGG	2 cut(s)	51, 1182
BstF5I	GGATG	3 cut(s)	871, 1081, 1405
BstFNI	CGCG	3 cut(s)	626, 1042, 1764
BstH2I	RGCGCY	1 cut(s)	132
BstHHI	GCGC	2 cut(s)	131, 628
BstMAI	GTCTC	3 cut(s)	312, 386, 725
BstMWI	GCNNNNNNNGC	5 cut(s)	634, 829, 980, 1282, 1348
BstNI	CCWGG	3 cut(s)	1307, 1524, 1575
BstNSI	RCATGY	2 cut(s)	1169, 1573
BstSCI	CCNGG	4 cut(s)	88, 1305, 1522, 1573
BstUI	CGCG	3 cut(s)	626, 1042, 1764
BstV1I	GCAGC	6 cut(s)	824, 937, 1159, 1174, 1706, 1741
BstV2I	GAAGAC	1 cut(s)	848
BstX2I	RGATCY	5 cut(s)	134, 542, 769, 1667, 1720
BstYI	RGATCY	5 cut(s)	134, 542, 769, 1667, 1720
BsuRI	GGCC	4 cut(s)	492, 623, 1026, 1177
BtgZI	GCGATG	1 cut(s)	1701
BtrI	CACGTC	1 cut(s)	1606
BtsCI	GGATG	3 cut(s)	871, 1081, 1405
BtsI	GCAGTG	1 cut(s)	963
BtsIMutI	CAGTG	1 cut(s)	963
Cac8I	GCNNGC	3 cut(s)	909, 1167, 1278
CaiI	CAGNNNCTG	2 cut(s)	249, 773
CfoI	GCGC	2 cut(s)	131, 628
Cfr13I	GGNCC	3 cut(s)	956, 1024, 1114
CseI	GACGC	1 cut(s)	1048
CsiI	ACCWGGT	1 cut(s)	1305
Csp6I	GTAC	8 cut(s)	76, 361, 430, 613, 883, 961, 1337, 1369
CviAII	CATG	9 cut(s)	97, 299, 494, 859, 1166, 1354, 1535, 1570, 1673
CviQI	GTAC	8 cut(s)	76, 361, 430, 613, 883, 961, 1337, 1369
DdeI	CTNAG	5 cut(s)	174, 311, 609, 1124, 1453
DinI	GGCGCC	1 cut(s)	130
DriI	GACNNNNNGTC	1 cut(s)	1543
EaeI	YGGCCR	1 cut(s)	490
Eam1104I	CTCTTC	2 cut(s)	391, 1632
Eam1105I	GACNNNNNGTC	1 cut(s)	1543
EarI	CTCTTC	2 cut(s)	391, 1632
Eco147I	AGGCCT	1 cut(s)	1177
Eco32I	GATATC	1 cut(s)	1497
Eco47I	GGWCC	2 cut(s)	956, 1114
EcoNI	CCTNNNNNAGG	2 cut(s)	51, 1182
EcoRI	GAATTC	2 cut(s)	373, 1379
EcoRII	CCWGG	3 cut(s)	1305, 1522, 1573
EcoRV	GATATC	1 cut(s)	1497
EcoT22I	ATGCAT	2 cut(s)	558, 1536
EgeI	GGCGCC	1 cut(s)	130
EheI	GGCGCC	1 cut(s)	130
FaeI	CATG	9 cut(s)	100, 302, 497, 862, 1169, 1357, 1538, 1573, 1676
FalI	AAGNNNNNCTT	2 cut(s)	370, 402
FaqI	GGGAC	2 cut(s)	71, 260
FatI	CATG	9 cut(s)	96, 298, 493, 858, 1165, 1353, 1534, 1569, 1672
FauI	CCCGC	1 cut(s)	1106
FauNDI	CATATG	1 cut(s)	1564
FbaI	TGATCA	1 cut(s)	745
FokI	GGATG	3 cut(s)	878, 1088, 1412
FspBI	CTAG	1 cut(s)	581
GlaI	GCGC	2 cut(s)	130, 627
GsaI	CCCAGC	1 cut(s)	942
HaeII	RGCGCY	1 cut(s)	132
HaeIII	GGCC	4 cut(s)	492, 623, 1026, 1177
HapII	CCGG	5 cut(s)	90, 132, 156, 1193, 1665
HgaI	GACGC	1 cut(s)	1048
HhaI	GCGC	2 cut(s)	131, 628
Hin1I	GRCGYC	1 cut(s)	129
Hin1II	CATG	9 cut(s)	100, 302, 497, 862, 1169, 1357, 1538, 1573, 1676
Hin6I	GCGC	2 cut(s)	129, 626
HinP1I	GCGC	2 cut(s)	129, 626
HindIII	AAGCTT	2 cut(s)	463, 697
HpaII	CCGG	5 cut(s)	90, 132, 156, 1193, 1665
HphI	GGTGA	3 cut(s)	434, 1397, 1404
Hpy166II	GTNNAC	2 cut(s)	963, 1114
Hpy188III	TCNNGA	4 cut(s)	540, 678, 1193, 1724
Hpy8I	GTNNAC	2 cut(s)	963, 1114
Hpy99I	CGWCG	1 cut(s)	1607
HpyAV	CCTTC	5 cut(s)	360, 412, 873, 1223, 1250
HpyCH4III	ACNGT	5 cut(s)	251, 633, 960, 1556, 1594
HpyCH4IV	ACGT	3 cut(s)	255, 1110, 1605
HpyF10VI	GCNNNNNNNGC	5 cut(s)	634, 829, 980, 1282, 1348
HpyF3I	CTNAG	5 cut(s)	174, 311, 609, 1124, 1453
HpySE526I	ACGT	3 cut(s)	255, 1110, 1605
Hsp92I	GRCGYC	1 cut(s)	129
Hsp92II	CATG	9 cut(s)	100, 302, 497, 862, 1169, 1357, 1538, 1573, 1676
HspAI	GCGC	2 cut(s)	129, 626
KasI	GGCGCC	1 cut(s)	128
Kpn2I	TCCGGA	1 cut(s)	1192
Ksp22I	TGATCA	1 cut(s)	745
LguI	GCTCTTC	1 cut(s)	1632
LmnI	GCTCC	2 cut(s)	409, 708
Lsp1109I	GCAGC	6 cut(s)	824, 937, 1159, 1174, 1706, 1741
LweI	GCATC	4 cut(s)	479, 1390, 1466, 1678
MabI	ACCWGGT	1 cut(s)	1305
MaeI	CTAG	1 cut(s)	581
MaeII	ACGT	3 cut(s)	255, 1110, 1605
MaeIII	GTNAC	7 cut(s)	251, 1036, 1550, 1608, 1675, 1709, 1765
MbiI	CCGCTC	1 cut(s)	711
MboII	GAAGA	8 cut(s)	378, 786, 853, 1235, 1388, 1401, 1445, 1649
MflI	RGATCY	5 cut(s)	134, 542, 769, 1667, 1720
MhlI	GDGCHC	2 cut(s)	788, 1644
MluCI	AATT	7 cut(s)	19, 327, 373, 984, 1029, 1066, 1379
MluI	ACGCGT	1 cut(s)	1762
Mly113I	GGCGCC	1 cut(s)	129
MlyI	GAGTC	5 cut(s)	182, 275, 569, 1452, 1532
MmeI	TCCRAC	2 cut(s)	843, 1560
Mph1103I	ATGCAT	2 cut(s)	558, 1536
MroI	TCCGGA	1 cut(s)	1192
MseI	TTAA	3 cut(s)	602, 702, 1295
MslI	CAYNNNNRTG	1 cut(s)	101
MspI	CCGG	5 cut(s)	90, 132, 156, 1193, 1665
MspR9I	CCNGG	4 cut(s)	90, 1307, 1524, 1575
Mva1269I	GAATGC	1 cut(s)	556
MvaI	CCWGG	3 cut(s)	1307, 1524, 1575
MvnI	CGCG	3 cut(s)	626, 1042, 1764
MwoI	GCNNNNNNNGC	5 cut(s)	634, 829, 980, 1282, 1348
NarI	GGCGCC	1 cut(s)	129
NciI	CCSGG	1 cut(s)	90
NdeI	CATATG	1 cut(s)	1564
NlaIII	CATG	9 cut(s)	100, 302, 497, 862, 1169, 1357, 1538, 1573, 1676
NlaIV	GGNNCC	7 cut(s)	130, 136, 544, 586, 724, 1669, 1722
NmuCI	GTSAC	5 cut(s)	251, 1036, 1550, 1608, 1709
NsiI	ATGCAT	2 cut(s)	558, 1536
NspI	RCATGY	2 cut(s)	1169, 1573
NspV	TTCGAA	2 cut(s)	459, 1230
PaeI	GCATGC	1 cut(s)	1169
PceI	AGGCCT	1 cut(s)	1177
PciSI	GCTCTTC	1 cut(s)	1632
PcsI	WCGNNNNNNNCGW	3 cut(s)	261, 566, 1006
PctI	GAATGC	1 cut(s)	556
PfeI	GAWTC	5 cut(s)	112, 779, 1013, 1259, 1741
PleI	GAGTC	5 cut(s)	182, 274, 569, 1451, 1532
PluTI	GGCGCC	1 cut(s)	132
PpsI	GAGTC	5 cut(s)	182, 274, 569, 1451, 1532
Ppu21I	YACGTR	1 cut(s)	1111
Psp6I	CCWGG	3 cut(s)	1305, 1522, 1573
PspFI	CCCAGC	1 cut(s)	938
PspGI	CCWGG	3 cut(s)	1305, 1522, 1573
PspN4I	GGNNCC	7 cut(s)	130, 136, 544, 586, 724, 1669, 1722
PspPI	GGNCC	3 cut(s)	956, 1024, 1114
PstNI	CAGNNNCTG	2 cut(s)	249, 773
PsuI	RGATCY	5 cut(s)	134, 542, 769, 1667, 1720
RsaI	GTAC	8 cut(s)	77, 362, 431, 614, 884, 962, 1338, 1370
RsaNI	GTAC	8 cut(s)	76, 361, 430, 613, 883, 961, 1337, 1369
RseI	CAYNNNNRTG	1 cut(s)	101
SapI	GCTCTTC	1 cut(s)	1632
SaqAI	TTAA	3 cut(s)	602, 702, 1295
Sau96I	GGNCC	3 cut(s)	956, 1024, 1114
SchI	GAGTC	5 cut(s)	182, 275, 569, 1452, 1532
ScrFI	CCNGG	4 cut(s)	90, 1307, 1524, 1575
SduI	GDGCHC	2 cut(s)	788, 1644
SexAI	ACCWGGT	1 cut(s)	1305
SfaNI	GCATC	4 cut(s)	479, 1390, 1466, 1678
SfoI	GGCGCC	1 cut(s)	130
SfuI	TTCGAA	2 cut(s)	459, 1230
SinI	GGWCC	2 cut(s)	956, 1114
SmiMI	CAYNNNNRTG	1 cut(s)	101
SmlI	CTYRAG	1 cut(s)	617
SmoI	CTYRAG	1 cut(s)	617
SphI	GCATGC	1 cut(s)	1169
Sse9I	AATT	7 cut(s)	19, 327, 373, 984, 1029, 1066, 1379
SseBI	AGGCCT	1 cut(s)	1177
SspDI	GGCGCC	1 cut(s)	128
SspI	AATATT	1 cut(s)	893
SspMI	CTAG	1 cut(s)	581
StuI	AGGCCT	1 cut(s)	1177
StyD4I	CCNGG	4 cut(s)	88, 1305, 1522, 1573
TaaI	ACNGT	5 cut(s)	251, 633, 960, 1556, 1594
TaiI	ACGT	3 cut(s)	258, 1113, 1608
TaqI	TCGA	7 cut(s)	459, 679, 782, 801, 1230, 1446, 1541
TasI	AATT	7 cut(s)	19, 327, 373, 984, 1029, 1066, 1379
TatI	WGTACW	2 cut(s)	429, 1368
TauI	GCSGC	6 cut(s)	162, 264, 492, 626, 1630, 1694
TfiI	GAWTC	5 cut(s)	112, 779, 1013, 1259, 1741
Tru1I	TTAA	3 cut(s)	602, 702, 1295
Tru9I	TTAA	3 cut(s)	602, 702, 1295
TscAI	CASTG	1 cut(s)	970
TseFI	GTSAC	5 cut(s)	251, 1036, 1550, 1608, 1709
TseI	GCWGC	6 cut(s)	812, 950, 1147, 1162, 1694, 1729
Tsp45I	GTSAC	5 cut(s)	251, 1036, 1550, 1608, 1709
TspDTI	ATGAA	3 cut(s)	525, 657, 1059
TspGWI	ACGGA	2 cut(s)	772, 1412
TspRI	CASTG	1 cut(s)	970
VpaK11BI	GGWCC	2 cut(s)	956, 1114
XagI	CCTNNNNNAGG	2 cut(s)	51, 1182
XapI	RAATTY	5 cut(s)	19, 327, 373, 1029, 1379
XceI	RCATGY	2 cut(s)	1169, 1573
XspI	CTAG	1 cut(s)	581
Zsp2I	ATGCAT	2 cut(s)	558, 1536

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.