AT1G75810

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0011876
Physical Location & Seq
Forward (+)
28461444 .. 28462366
923 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G75810.1

Sequence Viewer

Length: 378 bp
ATGTGTCTCATGGCGTTATCCGACGCGGTTCTCGGGAATCTCGCGACGATCTACGTGGCGGTGATTATCGCGATTAAAGCCTACGGATTAATCACCGGGAGGAGTTTCAGCGCTGGATTCGTCGTCGTCGTTTCGATTACGGCAGTTGGTGTTTTGCTTGCAGTTACGCTTGCTTGGGATGTGTCTCGTAGAGCAGCGGAGGCGGTTTCTCGGTACAATCGTGTTGGTGGTGAGGAAGATCTTAGCCACCACCGTCACCATCACGACGGTGGTGCGATTTGTAAAGGAGGGATTTGCTGGCACGGCGTTGCGGTTCGGTCTCCGGCTTCACAGGTTCGATTTAGGCTTCCACAACATATACCTTACGGTGCTTTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

125

Amino Acids

13.32

Weight (kDa)

9.3

Isoelectric Point (pI)

41.76

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0011876)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G75810
fragaria_vesca FvH4_2g38290
malus_domestica MD08G1011100.v1.1 MD15G1011100.v1.1
prunus_persica Prupe.1G363800_v2.0.a1 Prupe.1G363800_v2.0.a1
pyrus_communis pycom08g00980 pycom15g00950
rosa_chinensis RchiOBHm_Chr6g0303091
rosa_laevigata RLG00000011109
rosa_multiflora Rmu_sc0008911.1_g000002 Rmu_sc0009943.1_g000001
rosa_roxburghii Rroxscaffold_7G00165030
rosa_rugosa Rorug06G0319200
rosa_samantha Rh6AG432900 Rh6BG469800 Rh6DG432000
rosa_wichuraiana Rw1G004450 Rw6G037520

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 3 cut(s) 26, 44, 71
AciI CCGC 5 cut(s) 26, 59, 197, 203, 311
AfaI GTAC 1 cut(s) 215
AfeI AGCGCT 1 cut(s) 112
AleI CACNNNNGTG 1 cut(s) 267
Alw26I GTCTC 3 cut(s) 11, 189, 324
Ama87I CYCGRG 1 cut(s) 32
Aor51HI AGCGCT 1 cut(s) 112
ApeKI GCWGC 1 cut(s) 194
AseI ATTAAT 1 cut(s) 89
AspLEI GCGC 1 cut(s) 113
AsuC2I CCSGG 1 cut(s) 97
AsuHPI GGTGA 4 cut(s) 73, 85, 242, 248
AvaI CYCGRG 1 cut(s) 32
BaeI ACNNNNGTAYC 2 cut(s) 205, 238
BbvI GCAGC 1 cut(s) 206
BccI CCATC 1 cut(s) 267
BceAI ACGGC 2 cut(s) 156, 319
BcgI CGANNNNNNTGC 2 cut(s) 254, 288
BcnI CCSGG 1 cut(s) 97
BcoDI GTCTC 3 cut(s) 11, 189, 324
BfoI RGCGCY 1 cut(s) 114
BglII AGATCT 1 cut(s) 238
BisI GCNGC 1 cut(s) 195
BlsI GCNGC 1 cut(s) 196
Bme1390I CCNGG 1 cut(s) 97
BmeT110I CYCGRG 1 cut(s) 32
BmrFI CCNGG 1 cut(s) 97
BpuMI CCSGG 1 cut(s) 97
BsaAI YACGTR 1 cut(s) 55
BsaI GGTCTC 1 cut(s) 324
BseGI GGATG 1 cut(s) 184
BseRI GAGGAG 1 cut(s) 115
BseXI GCAGC 1 cut(s) 206
Bsh1236I CGCG 3 cut(s) 26, 44, 71
BsiHKCI CYCGRG 1 cut(s) 32
BsiSI CCGG 2 cut(s) 96, 323
BsmAI GTCTC 3 cut(s) 11, 189, 324
Bso31I GGTCTC 1 cut(s) 324
BsoBI CYCGRG 1 cut(s) 32
Bsp143I GATC 2 cut(s) 48, 238
Bsp68I TCGCGA 2 cut(s) 44, 71
BspACI CCGC 5 cut(s) 26, 59, 197, 203, 311
BspFNI CGCG 3 cut(s) 26, 44, 71
BspTNI GGTCTC 1 cut(s) 324
BssMI GATC 2 cut(s) 48, 238
Bst4CI ACNGT 3 cut(s) 254, 269, 368
BstBAI YACGTR 1 cut(s) 55
BstC8I GCNNGC 3 cut(s) 159, 171, 299
BstDEI CTNAG 1 cut(s) 242
BstF5I GGATG 1 cut(s) 184
BstFNI CGCG 3 cut(s) 26, 44, 71
BstH2I RGCGCY 1 cut(s) 114
BstHHI GCGC 1 cut(s) 113
BstKTI GATC 2 cut(s) 51, 241
BstMAI GTCTC 3 cut(s) 11, 189, 324
BstMBI GATC 2 cut(s) 48, 238
BstMWI GCNNNNNNNGC 3 cut(s) 77, 200, 303
BstSCI CCNGG 1 cut(s) 95
BstUI CGCG 3 cut(s) 26, 44, 71
BstV1I GCAGC 1 cut(s) 206
BstX2I RGATCY 1 cut(s) 238
BstYI RGATCY 1 cut(s) 238
BtsCI GGATG 1 cut(s) 184
BtuMI TCGCGA 2 cut(s) 44, 71
Cac8I GCNNGC 3 cut(s) 159, 171, 299
CfoI GCGC 1 cut(s) 113
CseI GACGC 1 cut(s) 32
Csp6I GTAC 1 cut(s) 214
CviAII CATG 1 cut(s) 10
CviJI RGCY 4 cut(s) 80, 246, 326, 346
CviKI_1 RGCY 4 cut(s) 80, 246, 326, 346
CviQI GTAC 1 cut(s) 214
DdeI CTNAG 1 cut(s) 242
DpnI GATC 2 cut(s) 50, 240
DpnII GATC 2 cut(s) 48, 238
Eco31I GGTCTC 1 cut(s) 324
Eco47III AGCGCT 1 cut(s) 112
Eco88I CYCGRG 1 cut(s) 32
FaeI CATG 1 cut(s) 13
FaiI YATR 3 cut(s) 11, 357, 359
FatI CATG 1 cut(s) 9
Fnu4HI GCNGC 1 cut(s) 195
FokI GGATG 1 cut(s) 191
Fsp4HI GCNGC 1 cut(s) 195
GlaI GCGC 1 cut(s) 112
GluI GCNGC 1 cut(s) 195
HaeII RGCGCY 1 cut(s) 114
HapII CCGG 2 cut(s) 96, 323
HgaI GACGC 1 cut(s) 32
HhaI GCGC 1 cut(s) 113
Hin1II CATG 1 cut(s) 13
Hin6I GCGC 1 cut(s) 111
HinP1I GCGC 1 cut(s) 111
HinfI GANTC 2 cut(s) 37, 117
HpaII CCGG 2 cut(s) 96, 323
HphI GGTGA 4 cut(s) 73, 85, 242, 248
Hpy188I TCNGA 2 cut(s) 22, 377
Hpy188III TCNNGA 4 cut(s) 34, 43, 70, 263
Hpy99I CGWCG 6 cut(s) 26, 49, 125, 128, 131, 269
HpyCH4III ACNGT 3 cut(s) 254, 269, 368
HpyCH4IV ACGT 1 cut(s) 54
HpyCH4V TGCA 1 cut(s) 161
HpyF10VI GCNNNNNNNGC 3 cut(s) 77, 200, 303
HpyF3I CTNAG 1 cut(s) 242
HpySE526I ACGT 1 cut(s) 54
Hsp92II CATG 1 cut(s) 13
HspAI GCGC 1 cut(s) 111
Kzo9I GATC 2 cut(s) 48, 238
LpnPI CCDG 5 cut(s) 99, 109, 283, 317, 336
Lsp1109I GCAGC 1 cut(s) 206
MaeII ACGT 1 cut(s) 54
MaeIII GTNAC 2 cut(s) 163, 254
MalI GATC 2 cut(s) 50, 240
MboI GATC 2 cut(s) 48, 238
MboII GAAGA 1 cut(s) 248
MflI RGATCY 1 cut(s) 238
MmeI TCCRAC 1 cut(s) 45
MnlI CCTC 4 cut(s) 93, 193, 226, 281
MseI TTAA 2 cut(s) 75, 89
MslI CAYNNNNRTG 1 cut(s) 267
MspA1I CMGCKG 1 cut(s) 197
MspI CCGG 2 cut(s) 96, 323
MspR9I CCNGG 1 cut(s) 97
MvnI CGCG 3 cut(s) 26, 44, 71
MwoI GCNNNNNNNGC 3 cut(s) 77, 200, 303
NciI CCSGG 1 cut(s) 97
NdeII GATC 2 cut(s) 48, 238
NlaIII CATG 1 cut(s) 13
NmuCI GTSAC 1 cut(s) 254
NruI TCGCGA 2 cut(s) 44, 71
OliI CACNNNNGTG 1 cut(s) 267
PcsI WCGNNNNNNNCGW 2 cut(s) 126, 217
PfeI GAWTC 2 cut(s) 37, 117
PkrI GCNGC 1 cut(s) 196
Ppu21I YACGTR 1 cut(s) 55
PshBI ATTAAT 1 cut(s) 89
PsuI RGATCY 1 cut(s) 238
RruI TCGCGA 2 cut(s) 44, 71
RsaI GTAC 1 cut(s) 215
RsaNI GTAC 1 cut(s) 214
RseI CAYNNNNRTG 1 cut(s) 267
SaqAI TTAA 2 cut(s) 75, 89
SatI GCNGC 1 cut(s) 195
Sau3AI GATC 2 cut(s) 48, 238
ScrFI CCNGG 1 cut(s) 97
SetI ASST 3 cut(s) 57, 336, 364
SmiMI CAYNNNNRTG 1 cut(s) 267
SsiI CCGC 5 cut(s) 26, 59, 197, 203, 311
StyD4I CCNGG 1 cut(s) 95
TaaI ACNGT 3 cut(s) 254, 269, 368
TaiI ACGT 1 cut(s) 57
TaqI TCGA 2 cut(s) 134, 337
TaqII GACCGA 1 cut(s) 306
TfiI GAWTC 2 cut(s) 37, 117
Tru1I TTAA 2 cut(s) 75, 89
Tru9I TTAA 2 cut(s) 75, 89
TseFI GTSAC 1 cut(s) 254
TseI GCWGC 1 cut(s) 194
Tsp45I GTSAC 1 cut(s) 254
TspGWI ACGGA 1 cut(s) 99
VspI ATTAAT 1 cut(s) 89
XcmI CCANNNNNNNNNTGG 1 cut(s) 266
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.