pycom15g00950

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr15
OG0011876
Physical Location & Seq
Reverse (-)
513706 .. 514041
336 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom15g00950.1

Sequence Viewer

Length: 336 bp
ATGGCGGTTTCCGACGCGGTGGTTAGGAACTTGACGATGATTTATGTGGCAGTCATTGTGGCGATCAAGGGGTACGGGGTGGCGATTGGGCAGAGCTTCGGCGGTGCCTTTGTGTTTATCCTCTCCACCGCCGTGGTGTGCCTTATTCTGTTCCTGACTCTGACGTGGGACGTCTCCCGCAAACCCACGTATGCAGTTCCCGGCGACAACAATCCTCCAGTTGCTCATGAGACGTGCAAGGGTGGTATTTGCTGGCACGGCGTGGCCGTGCGATCGTCGGCTTCTGATGTCCGGTTGAGGCTTCCTCAACAACTCAGTTATGGTGGCTTTTCGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

112

Amino Acids

11.79

Weight (kDa)

8.96

Isoelectric Point (pI)

39.73

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0011876)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G75810
fragaria_vesca FvH4_2g38290
malus_domestica MD08G1011100.v1.1 MD15G1011100.v1.1
prunus_persica Prupe.1G363800_v2.0.a1 Prupe.1G363800_v2.0.a1
pyrus_communis pycom08g00980 pycom15g00950
rosa_chinensis RchiOBHm_Chr6g0303091
rosa_laevigata RLG00000011109
rosa_multiflora Rmu_sc0008911.1_g000002 Rmu_sc0009943.1_g000001
rosa_roxburghii Rroxscaffold_7G00165030
rosa_rugosa Rorug06G0319200
rosa_samantha Rh6AG432900 Rh6BG469800 Rh6DG432000
rosa_wichuraiana Rw1G004450 Rw6G037520

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 174
AccB1I GGYRCC 1 cut(s) 104
AccII CGCG 1 cut(s) 17
AciI CCGC 5 cut(s) 5, 17, 102, 129, 178
AcoI YGGCCR 1 cut(s) 264
AcyI GRCGYC 1 cut(s) 171
AdeI CACNNNGTG 1 cut(s) 262
AfaI GTAC 1 cut(s) 74
AjiI CACGTC 2 cut(s) 165, 234
AleI CACNNNNGTG 1 cut(s) 131
AluBI AGCT 1 cut(s) 96
AluI AGCT 1 cut(s) 96
Alw26I GTCTC 2 cut(s) 178, 224
AoxI GGCC 1 cut(s) 264
AsuC2I CCSGG 1 cut(s) 201
BanI GGYRCC 1 cut(s) 104
BceAI ACGGC 3 cut(s) 116, 251, 274
BcnI CCSGG 1 cut(s) 201
BcoDI GTCTC 2 cut(s) 178, 224
Bme1390I CCNGG 1 cut(s) 201
BmgBI CACGTC 2 cut(s) 165, 234
BmiI GGNNCC 1 cut(s) 106
BmrFI CCNGG 1 cut(s) 201
BplI GAGNNNNNCTC 2 cut(s) 289, 321
BpmI CTGGAG 1 cut(s) 201
BpuMI CCSGG 1 cut(s) 201
BsaAI YACGTR 1 cut(s) 189
BsaHI GRCGYC 1 cut(s) 171
BsaJI CCNNGG 1 cut(s) 132
BsaWI WCCGGW 1 cut(s) 291
Bse1I ACTGG 1 cut(s) 218
BseDI CCNNGG 1 cut(s) 132
BseMII CTCAG 1 cut(s) 328
BseNI ACTGG 1 cut(s) 218
Bsh1236I CGCG 1 cut(s) 17
Bsh1285I CGRYCG 1 cut(s) 275
BshFI GGCC 1 cut(s) 266
BshNI GGYRCC 1 cut(s) 104
BsiEI CGRYCG 1 cut(s) 275
BsiSI CCGG 2 cut(s) 201, 292
BslFI GGGAC 1 cut(s) 182
BsmAI GTCTC 2 cut(s) 178, 224
BsmBI CGTCTC 2 cut(s) 178, 224
BsmFI GGGAC 1 cut(s) 182
BsnI GGCC 1 cut(s) 266
Bsp143I GATC 2 cut(s) 63, 272
BspACI CCGC 5 cut(s) 5, 17, 102, 129, 178
BspANI GGCC 1 cut(s) 266
BspCNI CTCAG 1 cut(s) 327
BspFNI CGCG 1 cut(s) 17
BspHI TCATGA 1 cut(s) 226
BspLI GGNNCC 1 cut(s) 106
BspT107I GGYRCC 1 cut(s) 104
BsrI ACTGG 1 cut(s) 218
BssECI CCNNGG 1 cut(s) 132
BssMI GATC 2 cut(s) 63, 272
BssNI GRCGYC 1 cut(s) 171
BstACI GRCGYC 1 cut(s) 171
BstBAI YACGTR 1 cut(s) 189
BstC8I GCNNGC 1 cut(s) 254
BstDEI CTNAG 1 cut(s) 314
BstDSI CCRYGG 1 cut(s) 132
BstFNI CGCG 1 cut(s) 17
BstKTI GATC 2 cut(s) 66, 275
BstMAI GTCTC 2 cut(s) 178, 224
BstMBI GATC 2 cut(s) 63, 272
BstMCI CGRYCG 1 cut(s) 275
BstMWI GCNNNNNNNGC 1 cut(s) 258
BstSCI CCNGG 1 cut(s) 199
BstUI CGCG 1 cut(s) 17
BstXI CCANNNNNNTGG 1 cut(s) 133
BsuRI GGCC 1 cut(s) 266
BtgI CCRYGG 1 cut(s) 132
BtrI CACGTC 2 cut(s) 165, 234
Cac8I GCNNGC 1 cut(s) 254
CciI TCATGA 1 cut(s) 226
CseI GACGC 1 cut(s) 23
Csp6I GTAC 1 cut(s) 73
CviAII CATG 1 cut(s) 227
CviJI RGCY 5 cut(s) 96, 266, 281, 301, 327
CviKI_1 RGCY 5 cut(s) 96, 266, 281, 301, 327
CviQI GTAC 1 cut(s) 73
DdeI CTNAG 1 cut(s) 314
DpnI GATC 2 cut(s) 65, 274
DpnII GATC 2 cut(s) 63, 272
DraIII CACNNNGTG 1 cut(s) 262
EaeI YGGCCR 1 cut(s) 264
Esp3I CGTCTC 2 cut(s) 178, 224
FaeI CATG 1 cut(s) 230
FaiI YATR 4 cut(s) 45, 192, 228, 321
FaqI GGGAC 1 cut(s) 182
FatI CATG 1 cut(s) 226
FauI CCCGC 1 cut(s) 185
GsuI CTGGAG 1 cut(s) 201
HaeIII GGCC 1 cut(s) 266
HapII CCGG 2 cut(s) 201, 292
HgaI GACGC 1 cut(s) 23
Hin1I GRCGYC 1 cut(s) 171
Hin1II CATG 1 cut(s) 230
HinfI GANTC 1 cut(s) 157
HpaII CCGG 2 cut(s) 201, 292
Hpy188I TCNGA 3 cut(s) 13, 162, 286
Hpy188III TCNNGA 2 cut(s) 154, 227
Hpy99I CGWCG 2 cut(s) 17, 280
HpyCH4IV ACGT 4 cut(s) 164, 171, 188, 233
HpyCH4V TGCA 2 cut(s) 194, 237
HpyF10VI GCNNNNNNNGC 1 cut(s) 258
HpyF3I CTNAG 1 cut(s) 314
HpySE526I ACGT 4 cut(s) 164, 171, 188, 233
Hsp92I GRCGYC 1 cut(s) 171
Hsp92II CATG 1 cut(s) 230
Kzo9I GATC 2 cut(s) 63, 272
LpnPI CCDG 5 cut(s) 167, 214, 231, 238, 305
MaeII ACGT 4 cut(s) 164, 171, 188, 233
MalI GATC 2 cut(s) 65, 274
MboI GATC 2 cut(s) 63, 272
MlyI GAGTC 1 cut(s) 151
MmeI TCCRAC 1 cut(s) 36
MnlI CCTC 4 cut(s) 131, 225, 291, 315
MslI CAYNNNNRTG 1 cut(s) 131
MspI CCGG 2 cut(s) 201, 292
MspR9I CCNGG 1 cut(s) 201
MvnI CGCG 1 cut(s) 17
MwoI GCNNNNNNNGC 1 cut(s) 258
NciI CCSGG 1 cut(s) 201
NdeII GATC 2 cut(s) 63, 272
NlaIII CATG 1 cut(s) 230
NlaIV GGNNCC 1 cut(s) 106
OliI CACNNNNGTG 1 cut(s) 131
PagI TCATGA 1 cut(s) 226
PcsI WCGNNNNNNNCGW 1 cut(s) 264
Ple19I CGATCG 1 cut(s) 275
PleI GAGTC 1 cut(s) 151
PpsI GAGTC 1 cut(s) 151
Ppu21I YACGTR 1 cut(s) 189
PspN4I GGNNCC 1 cut(s) 106
PvuI CGATCG 1 cut(s) 275
RsaI GTAC 1 cut(s) 74
RsaNI GTAC 1 cut(s) 73
RseI CAYNNNNRTG 1 cut(s) 131
Sau3AI GATC 2 cut(s) 63, 272
SchI GAGTC 1 cut(s) 151
ScrFI CCNGG 1 cut(s) 201
SetI ASST 5 cut(s) 98, 167, 174, 191, 236
SmiMI CAYNNNNRTG 1 cut(s) 131
SsiI CCGC 5 cut(s) 5, 17, 102, 129, 178
StyD4I CCNGG 1 cut(s) 199
TaiI ACGT 4 cut(s) 167, 174, 191, 236
ZraI GACGTC 1 cut(s) 172
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.