MD08G1011100.v1.1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr08
OG0011876
Physical Location & Seq
Reverse (-)
858835 .. 859173
339 bp
Loading structure...
UTR
Exon/CDS
Intron
MD08G1011100.v1.1.491

Sequence Viewer

Length: 339 bp
ATGGCGGTTTCTGACGCGGTGGTTAGGAACTTGACGACGATTTACGTGGCGGTCATCGTCGCCATCAAGGCGTACGGGGTGGTGTTTGGGCAGAGCTTCGGTGGTGCCTTTGTGTTAATCCTCTCCACCTCCGTGGTGTGCCTTATCCTGTTCCTGACTCTGGCGTGGGACGTCTCCCGTAAAGCCACGTACGCAGTTTCGCGCGACGACAATCCTCCTCCCGTTGCTCATGAGACGTGCAAGGGTGGTATTTGCTGGCACGGCGTGCGCGTCCGATCGTCGGCTTCGGACGTCCGGTTTAGGCTCCCGCAACAAATCGGCTATGGAGGCTCTTCGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

113

Amino Acids

11.98

Weight (kDa)

9.25

Isoelectric Point (pI)

43.96

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011876)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G75810
fragaria_vesca FvH4_2g38290
malus_domestica MD08G1011100.v1.1 MD15G1011100.v1.1
prunus_persica Prupe.1G363800_v2.0.a1 Prupe.1G363800_v2.0.a1
pyrus_communis pycom08g00980 pycom15g00950
rosa_chinensis RchiOBHm_Chr6g0303091
rosa_laevigata RLG00000011109
rosa_multiflora Rmu_sc0008911.1_g000002 Rmu_sc0009943.1_g000001
rosa_roxburghii Rroxscaffold_7G00165030
rosa_rugosa Rorug06G0319200
rosa_samantha Rh6AG432900 Rh6BG469800 Rh6DG432000
rosa_wichuraiana Rw1G004450 Rw6G037520

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 2 cut(s) 174, 294
AccB1I GGYRCC 1 cut(s) 104
AccII CGCG 4 cut(s) 17, 202, 204, 270
AciI CCGC 4 cut(s) 5, 17, 50, 308
AcyI GRCGYC 2 cut(s) 171, 291
AdeI CACNNNGTG 1 cut(s) 265
AfaI GTAC 2 cut(s) 74, 191
AfiI CCNNNNNNNGG 2 cut(s) 160, 280
AjiI CACGTC 1 cut(s) 237
AleI CACNNNNGTG 1 cut(s) 131
AluBI AGCT 1 cut(s) 96
AluI AGCT 1 cut(s) 96
Alw26I GTCTC 2 cut(s) 178, 227
AspLEI GCGC 2 cut(s) 204, 270
BanI GGYRCC 1 cut(s) 104
BccI CCATC 1 cut(s) 71
BceAI ACGGC 1 cut(s) 277
BcoDI GTCTC 2 cut(s) 178, 227
BglI GCCNNNNNGGC 1 cut(s) 68
BmgBI CACGTC 1 cut(s) 237
BmiI GGNNCC 2 cut(s) 106, 305
BsaAI YACGTR 2 cut(s) 46, 189
BsaHI GRCGYC 2 cut(s) 171, 291
BsaJI CCNNGG 1 cut(s) 132
BsaWI WCCGGW 1 cut(s) 294
Bsc4I CCNNNNNNNGG 2 cut(s) 160, 280
BseDI CCNNGG 1 cut(s) 132
BseLI CCNNNNNNNGG 2 cut(s) 160, 280
BseRI GAGGAG 1 cut(s) 207
Bsh1236I CGCG 4 cut(s) 17, 202, 204, 270
Bsh1285I CGRYCG 1 cut(s) 278
BshNI GGYRCC 1 cut(s) 104
BsiEI CGRYCG 1 cut(s) 278
BsiSI CCGG 1 cut(s) 295
BsiWI CGTACG 2 cut(s) 72, 189
BslFI GGGAC 1 cut(s) 182
BslI CCNNNNNNNGG 2 cut(s) 160, 280
BsmAI GTCTC 2 cut(s) 178, 227
BsmBI CGTCTC 2 cut(s) 178, 227
BsmFI GGGAC 1 cut(s) 182
Bsp143I GATC 1 cut(s) 275
BspACI CCGC 4 cut(s) 5, 17, 50, 308
BspFNI CGCG 4 cut(s) 17, 202, 204, 270
BspHI TCATGA 1 cut(s) 229
BspLI GGNNCC 2 cut(s) 106, 305
BspT107I GGYRCC 1 cut(s) 104
BssECI CCNNGG 1 cut(s) 132
BssMI GATC 1 cut(s) 275
BssNI GRCGYC 2 cut(s) 171, 291
BstACI GRCGYC 2 cut(s) 171, 291
BstAPI GCANNNNNTGC 1 cut(s) 265
BstBAI YACGTR 2 cut(s) 46, 189
BstC8I GCNNGC 2 cut(s) 257, 266
BstDSI CCRYGG 1 cut(s) 132
BstFNI CGCG 4 cut(s) 17, 202, 204, 270
BstHHI GCGC 2 cut(s) 204, 270
BstKTI GATC 1 cut(s) 278
BstMAI GTCTC 2 cut(s) 178, 227
BstMBI GATC 1 cut(s) 275
BstMCI CGRYCG 1 cut(s) 278
BstMWI GCNNNNNNNGC 5 cut(s) 68, 191, 261, 265, 327
BstUI CGCG 4 cut(s) 17, 202, 204, 270
BstXI CCANNNNNNTGG 1 cut(s) 133
BtgI CCRYGG 1 cut(s) 132
BtrI CACGTC 1 cut(s) 237
Cac8I GCNNGC 2 cut(s) 257, 266
CciI TCATGA 1 cut(s) 229
CfoI GCGC 2 cut(s) 204, 270
CseI GACGC 2 cut(s) 23, 259
Csp6I GTAC 2 cut(s) 73, 190
CviAII CATG 1 cut(s) 230
CviJI RGCY 6 cut(s) 96, 185, 284, 304, 321, 330
CviKI_1 RGCY 6 cut(s) 96, 185, 284, 304, 321, 330
CviQI GTAC 2 cut(s) 73, 190
DpnI GATC 1 cut(s) 277
DpnII GATC 1 cut(s) 275
DraIII CACNNNGTG 1 cut(s) 265
Esp3I CGTCTC 2 cut(s) 178, 227
FaeI CATG 1 cut(s) 233
FaiI YATR 2 cut(s) 231, 324
FaqI GGGAC 1 cut(s) 182
FatI CATG 1 cut(s) 229
FauI CCCGC 1 cut(s) 315
GlaI GCGC 2 cut(s) 203, 269
HapII CCGG 1 cut(s) 295
HgaI GACGC 2 cut(s) 23, 259
HhaI GCGC 2 cut(s) 204, 270
Hin1I GRCGYC 2 cut(s) 171, 291
Hin1II CATG 1 cut(s) 233
Hin6I GCGC 2 cut(s) 202, 268
HinP1I GCGC 2 cut(s) 202, 268
HinfI GANTC 1 cut(s) 157
HpaII CCGG 1 cut(s) 295
Hpy188I TCNGA 3 cut(s) 13, 275, 289
Hpy188III TCNNGA 2 cut(s) 154, 230
Hpy99I CGWCG 4 cut(s) 40, 62, 209, 283
HpyCH4IV ACGT 5 cut(s) 45, 171, 188, 236, 291
HpyCH4V TGCA 1 cut(s) 240
HpyF10VI GCNNNNNNNGC 5 cut(s) 68, 191, 261, 265, 327
HpySE526I ACGT 5 cut(s) 45, 171, 188, 236, 291
Hsp92I GRCGYC 2 cut(s) 171, 291
Hsp92II CATG 1 cut(s) 233
HspAI GCGC 2 cut(s) 202, 268
Kzo9I GATC 1 cut(s) 275
LmnI GCTCC 1 cut(s) 309
LpnPI CCDG 5 cut(s) 146, 161, 167, 241, 308
MaeII ACGT 5 cut(s) 45, 171, 188, 236, 291
MalI GATC 1 cut(s) 277
MboI GATC 1 cut(s) 275
MboII GAAGA 1 cut(s) 324
MlyI GAGTC 1 cut(s) 151
MnlI CCTC 5 cut(s) 131, 139, 225, 228, 320
MseI TTAA 1 cut(s) 116
MslI CAYNNNNRTG 1 cut(s) 131
MspI CCGG 1 cut(s) 295
MvnI CGCG 4 cut(s) 17, 202, 204, 270
MwoI GCNNNNNNNGC 5 cut(s) 68, 191, 261, 265, 327
NdeII GATC 1 cut(s) 275
NlaIII CATG 1 cut(s) 233
NlaIV GGNNCC 2 cut(s) 106, 305
OliI CACNNNNGTG 1 cut(s) 131
PagI TCATGA 1 cut(s) 229
PcsI WCGNNNNNNNCGW 1 cut(s) 267
Pfl23II CGTACG 2 cut(s) 72, 189
Ple19I CGATCG 1 cut(s) 278
PleI GAGTC 1 cut(s) 151
PpsI GAGTC 1 cut(s) 151
Ppu21I YACGTR 2 cut(s) 46, 189
PspLI CGTACG 2 cut(s) 72, 189
PspN4I GGNNCC 2 cut(s) 106, 305
PvuI CGATCG 1 cut(s) 278
RsaI GTAC 2 cut(s) 74, 191
RsaNI GTAC 2 cut(s) 73, 190
RseI CAYNNNNRTG 1 cut(s) 131
SaqAI TTAA 1 cut(s) 116
Sau3AI GATC 1 cut(s) 275
SchI GAGTC 1 cut(s) 151
SetI ASST 7 cut(s) 48, 98, 131, 174, 191, 239, 294
SmiMI CAYNNNNRTG 1 cut(s) 131
SsiI CCGC 4 cut(s) 5, 17, 50, 308
TaiI ACGT 5 cut(s) 48, 174, 191, 239, 294
Tru1I TTAA 1 cut(s) 116
Tru9I TTAA 1 cut(s) 116
TspGWI ACGGA 1 cut(s) 121
ZraI GACGTC 2 cut(s) 172, 292
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.