FvH4_2g38290

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0011876
Physical Location & Seq
Reverse (-)
27730698 .. 27731964
1267 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g38290.t1

Sequence Viewer

Length: 333 bp
ATGGCGGTTTCTGACGCGGTGGTGGGGAACTTGACGACGATATACGTGGCGGTCATCGCCGGAATCAAGGCCTACGGCGTGGTCTCTGGTCGGAGCTTCGGCGGATTCTTTGTGTTGCTTGCTTCCACCGTCGTGGTTTGCCTTATCCTGGTCCTGACGCTGACGTGGGACGTGTCGCGCAAAGCCACGTATGCTGTCACTTCCCGCGATGATGCCGAAGTCCACGAGAGTTGCAAGGGTGGGATTTGCTGGCATGGCGTCGCCGTCCGGTCGTCGGCTTCTCGGGTCCGGTTTAGGCTTCCCGAACAGCTTGTTAGTTATGGCTCTTCGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

111

Amino Acids

11.67

Weight (kDa)

8.96

Isoelectric Point (pI)

40.52

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011876)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G75810
fragaria_vesca FvH4_2g38290
malus_domestica MD08G1011100.v1.1 MD15G1011100.v1.1
prunus_persica Prupe.1G363800_v2.0.a1 Prupe.1G363800_v2.0.a1
pyrus_communis pycom08g00980 pycom15g00950
rosa_chinensis RchiOBHm_Chr6g0303091
rosa_laevigata RLG00000011109
rosa_multiflora Rmu_sc0008911.1_g000002 Rmu_sc0009943.1_g000001
rosa_roxburghii Rroxscaffold_7G00165030
rosa_rugosa Rorug06G0319200
rosa_samantha Rh6AG432900 Rh6BG469800 Rh6DG432000
rosa_wichuraiana Rw1G004450 Rw6G037520

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 3 cut(s) 17, 178, 207
AciI CCGC 5 cut(s) 5, 17, 50, 102, 205
AcyI GRCGYC 1 cut(s) 258
AfiI CCNNNNNNNGG 2 cut(s) 148, 274
AflIII ACRYGT 1 cut(s) 171
AjiI CACGTC 2 cut(s) 165, 172
AjnI CCWGG 1 cut(s) 147
AleI CACNNNNGTG 1 cut(s) 131
AluBI AGCT 2 cut(s) 96, 310
AluI AGCT 2 cut(s) 96, 310
Alw26I GTCTC 1 cut(s) 88
Ama87I CYCGRG 1 cut(s) 282
AoxI GGCC 1 cut(s) 69
AspLEI GCGC 1 cut(s) 180
AspS9I GGNCC 2 cut(s) 151, 286
AvaI CYCGRG 1 cut(s) 282
AvaII GGWCC 2 cut(s) 151, 286
BauI CACGAG 1 cut(s) 224
BceAI ACGGC 2 cut(s) 91, 248
BciT130I CCWGG 1 cut(s) 149
BcoDI GTCTC 1 cut(s) 88
Bme1390I CCNGG 1 cut(s) 149
Bme18I GGWCC 2 cut(s) 151, 286
BmeT110I CYCGRG 1 cut(s) 282
BmgBI CACGTC 2 cut(s) 165, 172
BmgT120I GGNCC 2 cut(s) 151, 286
BmiI GGNNCC 1 cut(s) 287
BmrFI CCNGG 1 cut(s) 149
BmsI GCATC 1 cut(s) 202
BsaAI YACGTR 2 cut(s) 46, 189
BsaHI GRCGYC 1 cut(s) 258
BsaI GGTCTC 1 cut(s) 88
BsaWI WCCGGW 2 cut(s) 267, 288
Bsc4I CCNNNNNNNGG 2 cut(s) 148, 274
BseBI CCWGG 1 cut(s) 149
BseLI CCNNNNNNNGG 2 cut(s) 148, 274
Bsh1236I CGCG 3 cut(s) 17, 178, 207
Bsh1285I CGRYCG 1 cut(s) 272
BshFI GGCC 1 cut(s) 71
BsiEI CGRYCG 1 cut(s) 272
BsiHKCI CYCGRG 1 cut(s) 282
BsiSI CCGG 3 cut(s) 60, 268, 289
BslFI GGGAC 1 cut(s) 182
BslI CCNNNNNNNGG 2 cut(s) 148, 274
BsmAI GTCTC 1 cut(s) 88
BsmFI GGGAC 1 cut(s) 182
BsnI GGCC 1 cut(s) 71
Bso31I GGTCTC 1 cut(s) 88
BsoBI CYCGRG 1 cut(s) 282
BspACI CCGC 5 cut(s) 5, 17, 50, 102, 205
BspANI GGCC 1 cut(s) 71
BspFNI CGCG 3 cut(s) 17, 178, 207
BspLI GGNNCC 1 cut(s) 287
BspTNI GGTCTC 1 cut(s) 88
BssNI GRCGYC 1 cut(s) 258
BssSI CACGAG 1 cut(s) 224
Bst2BI CACGAG 1 cut(s) 224
Bst2UI CCWGG 1 cut(s) 149
Bst4CI ACNGT 1 cut(s) 130
BstACI GRCGYC 1 cut(s) 258
BstBAI YACGTR 2 cut(s) 46, 189
BstC8I GCNNGC 2 cut(s) 120, 251
BstFNI CGCG 3 cut(s) 17, 178, 207
BstHHI GCGC 1 cut(s) 180
BstMAI GTCTC 1 cut(s) 88
BstMCI CGRYCG 1 cut(s) 272
BstMWI GCNNNNNNNGC 3 cut(s) 56, 191, 255
BstNI CCWGG 1 cut(s) 149
BstSCI CCNGG 1 cut(s) 147
BstUI CGCG 3 cut(s) 17, 178, 207
BstXI CCANNNNNNTGG 1 cut(s) 133
BsuRI GGCC 1 cut(s) 71
BtgZI GCGATG 2 cut(s) 40, 222
BtrI CACGTC 2 cut(s) 165, 172
Cac8I GCNNGC 2 cut(s) 120, 251
CfoI GCGC 1 cut(s) 180
Cfr13I GGNCC 2 cut(s) 151, 286
CseI GACGC 3 cut(s) 23, 166, 247
CspCI CAANNNNNGTGG 2 cut(s) 212, 247
CviAII CATG 1 cut(s) 254
CviJI RGCY 7 cut(s) 71, 96, 185, 278, 298, 310, 324
CviKI_1 RGCY 7 cut(s) 71, 96, 185, 278, 298, 310, 324
EciI GGCGGA 1 cut(s) 117
Eco147I AGGCCT 1 cut(s) 71
Eco31I GGTCTC 1 cut(s) 88
Eco47I GGWCC 2 cut(s) 151, 286
Eco88I CYCGRG 1 cut(s) 282
EcoRII CCWGG 1 cut(s) 147
FaeI CATG 1 cut(s) 257
FaiI YATR 4 cut(s) 43, 192, 255, 321
FaqI GGGAC 1 cut(s) 182
FatI CATG 1 cut(s) 253
FauI CCCGC 1 cut(s) 212
GlaI GCGC 1 cut(s) 179
HaeIII GGCC 1 cut(s) 71
HapII CCGG 3 cut(s) 60, 268, 289
HgaI GACGC 3 cut(s) 23, 166, 247
HhaI GCGC 1 cut(s) 180
Hin1I GRCGYC 1 cut(s) 258
Hin1II CATG 1 cut(s) 257
Hin6I GCGC 1 cut(s) 178
HinP1I GCGC 1 cut(s) 178
HinfI GANTC 2 cut(s) 63, 105
HpaII CCGG 3 cut(s) 60, 268, 289
Hpy166II GTNNAC 1 cut(s) 223
Hpy188I TCNGA 2 cut(s) 13, 93
Hpy188III TCNNGA 3 cut(s) 154, 302, 330
Hpy8I GTNNAC 1 cut(s) 223
Hpy99I CGWCG 4 cut(s) 40, 134, 263, 277
HpyCH4III ACNGT 1 cut(s) 130
HpyCH4IV ACGT 4 cut(s) 45, 164, 171, 188
HpyCH4V TGCA 1 cut(s) 234
HpyF10VI GCNNNNNNNGC 3 cut(s) 56, 191, 255
HpySE526I ACGT 4 cut(s) 45, 164, 171, 188
Hsp92I GRCGYC 1 cut(s) 258
Hsp92II CATG 1 cut(s) 257
HspAI GCGC 1 cut(s) 178
LmnI GCTCC 1 cut(s) 93
LpnPI CCDG 8 cut(s) 72, 73, 134, 161, 167, 235, 281, 302
LweI GCATC 1 cut(s) 202
MaeII ACGT 4 cut(s) 45, 164, 171, 188
MaeIII GTNAC 1 cut(s) 196
MboII GAAGA 1 cut(s) 318
MmeI TCCRAC 1 cut(s) 71
MslI CAYNNNNRTG 1 cut(s) 131
MspI CCGG 3 cut(s) 60, 268, 289
MspR9I CCNGG 1 cut(s) 149
MvaI CCWGG 1 cut(s) 149
MvnI CGCG 3 cut(s) 17, 178, 207
MwoI GCNNNNNNNGC 3 cut(s) 56, 191, 255
NlaIII CATG 1 cut(s) 257
NlaIV GGNNCC 1 cut(s) 287
NmuCI GTSAC 1 cut(s) 196
OliI CACNNNNGTG 1 cut(s) 131
PceI AGGCCT 1 cut(s) 71
PfeI GAWTC 2 cut(s) 63, 105
Ppu21I YACGTR 2 cut(s) 46, 189
Psp6I CCWGG 1 cut(s) 147
PspGI CCWGG 1 cut(s) 147
PspN4I GGNNCC 1 cut(s) 287
PspPI GGNCC 2 cut(s) 151, 286
RseI CAYNNNNRTG 1 cut(s) 131
Sau96I GGNCC 2 cut(s) 151, 286
ScrFI CCNGG 1 cut(s) 149
SetI ASST 6 cut(s) 48, 98, 167, 174, 191, 312
SfaNI GCATC 1 cut(s) 202
SinI GGWCC 2 cut(s) 151, 286
SmiMI CAYNNNNRTG 1 cut(s) 131
SseBI AGGCCT 1 cut(s) 71
SsiI CCGC 5 cut(s) 5, 17, 50, 102, 205
StuI AGGCCT 1 cut(s) 71
StyD4I CCNGG 1 cut(s) 147
TaaI ACNGT 1 cut(s) 130
TaiI ACGT 4 cut(s) 48, 167, 174, 191
TfiI GAWTC 2 cut(s) 63, 105
TseFI GTSAC 1 cut(s) 196
Tsp45I GTSAC 1 cut(s) 196
VpaK11BI GGWCC 2 cut(s) 151, 286
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.