Rh6BG469800

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6B
OG0011876
Physical Location & Seq
Reverse (-)
67772742 .. 67773899
1158 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6BG469800.1

Sequence Viewer

Length: 342 bp
ATGGCGGTGTCTGACGCAGTGGTGGGGAACTTGACGACGATCTACGTGGCAGTCATCGCCGGGATCAAGGCCTACGGGGTGGTGTCTGGTCGGACCTTCGGCGGCGGGTTTGTGTTGATTGCCTCCACCGTCGTGGTTGGCCTCATCCTGGTTCTGACGCTGATGTGGGATGTGTCCCGTAAAGCCAAGTACGCAGTTTCCCGCGATGATGCCGATGGTGGTAGTGATGTGCACGAGAGTTGCAAGGGTGGGATTTGCTGGCACGGCGTCGCCGTCCGGTCGTCGGCTTCTCAGGTCCGGTTTAGGCTTCCGGAACAGCTAGTTAGCTATGGCTCTTCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

113

Amino Acids

11.78

Weight (kDa)

8.68

Isoelectric Point (pI)

37.3

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011876)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G75810
fragaria_vesca FvH4_2g38290
malus_domestica MD08G1011100.v1.1 MD15G1011100.v1.1
prunus_persica Prupe.1G363800_v2.0.a1 Prupe.1G363800_v2.0.a1
pyrus_communis pycom08g00980 pycom15g00950
rosa_chinensis RchiOBHm_Chr6g0303091
rosa_laevigata RLG00000011109
rosa_multiflora Rmu_sc0008911.1_g000002 Rmu_sc0009943.1_g000001
rosa_roxburghii Rroxscaffold_7G00165030
rosa_rugosa Rorug06G0319200
rosa_samantha Rh6AG432900 Rh6BG469800 Rh6DG432000
rosa_wichuraiana Rw1G004450 Rw6G037520

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 204
AccIII TCCGGA 1 cut(s) 310
AciI CCGC 4 cut(s) 5, 102, 105, 202
AclWI GGATC 1 cut(s) 71
AcyI GRCGYC 1 cut(s) 267
AfaI GTAC 1 cut(s) 191
AfiI CCNNNNNNNGG 2 cut(s) 148, 283
AjnI CCWGG 1 cut(s) 147
AleI CACNNNNGTG 1 cut(s) 131
AluBI AGCT 2 cut(s) 319, 327
AluI AGCT 2 cut(s) 319, 327
Alw21I GWGCWC 1 cut(s) 234
Alw44I GTGCAC 1 cut(s) 230
AlwI GGATC 1 cut(s) 71
Aor13HI TCCGGA 1 cut(s) 310
AoxI GGCC 2 cut(s) 69, 139
ApaLI GTGCAC 1 cut(s) 230
AspS9I GGNCC 2 cut(s) 93, 295
AsuC2I CCSGG 1 cut(s) 61
AvaII GGWCC 2 cut(s) 93, 295
BaeGI GKGCMC 1 cut(s) 234
BauI CACGAG 1 cut(s) 233
Bbv12I GWGCWC 1 cut(s) 234
BccI CCATC 1 cut(s) 209
BceAI ACGGC 2 cut(s) 257, 280
BciT130I CCWGG 1 cut(s) 149
BcnI CCSGG 1 cut(s) 61
BfaI CTAG 1 cut(s) 320
BisI GCNGC 1 cut(s) 103
BlsI GCNGC 1 cut(s) 104
Bme1390I CCNGG 2 cut(s) 61, 149
Bme18I GGWCC 2 cut(s) 93, 295
BmgT120I GGNCC 2 cut(s) 93, 295
BmrFI CCNGG 2 cut(s) 61, 149
BmsI GCATC 1 cut(s) 199
BpuMI CCSGG 1 cut(s) 61
BsaAI YACGTR 1 cut(s) 46
BsaHI GRCGYC 1 cut(s) 267
BsaWI WCCGGW 3 cut(s) 276, 297, 310
Bsc4I CCNNNNNNNGG 2 cut(s) 148, 283
BseAI TCCGGA 1 cut(s) 310
BseBI CCWGG 1 cut(s) 149
BseGI GGATG 2 cut(s) 144, 175
BseLI CCNNNNNNNGG 2 cut(s) 148, 283
BseMII CTCAG 1 cut(s) 305
BseSI GKGCMC 1 cut(s) 234
Bsh1236I CGCG 1 cut(s) 204
Bsh1285I CGRYCG 1 cut(s) 281
BshFI GGCC 2 cut(s) 71, 141
BsiEI CGRYCG 1 cut(s) 281
BsiHKAI GWGCWC 1 cut(s) 234
BsiSI CCGG 4 cut(s) 60, 277, 298, 311
BslFI GGGAC 1 cut(s) 160
BslI CCNNNNNNNGG 2 cut(s) 148, 283
BsmFI GGGAC 1 cut(s) 160
BsnI GGCC 2 cut(s) 71, 141
Bsp1286I GDGCHC 1 cut(s) 234
Bsp13I TCCGGA 1 cut(s) 310
Bsp143I GATC 2 cut(s) 39, 63
BspACI CCGC 4 cut(s) 5, 102, 105, 202
BspANI GGCC 2 cut(s) 71, 141
BspCNI CTCAG 1 cut(s) 304
BspEI TCCGGA 1 cut(s) 310
BspFNI CGCG 1 cut(s) 204
BspHI TCATGA 1 cut(s) 338
BspPI GGATC 1 cut(s) 71
BssMI GATC 2 cut(s) 39, 63
BssNI GRCGYC 1 cut(s) 267
BssSI CACGAG 1 cut(s) 233
Bst2BI CACGAG 1 cut(s) 233
Bst2UI CCWGG 1 cut(s) 149
Bst4CI ACNGT 1 cut(s) 130
BstACI GRCGYC 1 cut(s) 267
BstBAI YACGTR 1 cut(s) 46
BstC8I GCNNGC 1 cut(s) 260
BstDEI CTNAG 1 cut(s) 291
BstF5I GGATG 2 cut(s) 144, 175
BstFNI CGCG 1 cut(s) 204
BstKTI GATC 2 cut(s) 42, 66
BstMBI GATC 2 cut(s) 39, 63
BstMCI CGRYCG 1 cut(s) 281
BstMWI GCNNNNNNNGC 3 cut(s) 56, 191, 264
BstNI CCWGG 1 cut(s) 149
BstSCI CCNGG 2 cut(s) 59, 147
BstSLI GKGCMC 1 cut(s) 234
BstUI CGCG 1 cut(s) 204
BstXI CCANNNNNNTGG 1 cut(s) 133
BsuRI GGCC 2 cut(s) 71, 141
BtgZI GCGATG 2 cut(s) 40, 219
BtsCI GGATG 2 cut(s) 144, 175
BtsI GCAGTG 1 cut(s) 24
BtsIMutI CAGTG 1 cut(s) 24
Cac8I GCNNGC 1 cut(s) 260
CciI TCATGA 1 cut(s) 338
Cfr13I GGNCC 2 cut(s) 93, 295
CseI GACGC 3 cut(s) 23, 166, 256
Csp6I GTAC 1 cut(s) 190
CviAII CATG 1 cut(s) 339
CviJI RGCY 8 cut(s) 71, 141, 185, 287, 307, 319, 327, 333
CviKI_1 RGCY 8 cut(s) 71, 141, 185, 287, 307, 319, 327, 333
CviQI GTAC 1 cut(s) 190
DdeI CTNAG 1 cut(s) 291
DpnI GATC 2 cut(s) 41, 65
DpnII GATC 2 cut(s) 39, 63
Eco147I AGGCCT 1 cut(s) 71
Eco47I GGWCC 2 cut(s) 93, 295
EcoRII CCWGG 1 cut(s) 147
FaeI CATG 1 cut(s) 342
FaiI YATR 2 cut(s) 330, 340
FaqI GGGAC 1 cut(s) 160
FatI CATG 1 cut(s) 338
FauI CCCGC 2 cut(s) 98, 209
Fnu4HI GCNGC 1 cut(s) 103
FokI GGATG 2 cut(s) 131, 182
Fsp4HI GCNGC 1 cut(s) 103
FspBI CTAG 1 cut(s) 320
GluI GCNGC 1 cut(s) 103
HaeIII GGCC 2 cut(s) 71, 141
HapII CCGG 4 cut(s) 60, 277, 298, 311
HgaI GACGC 3 cut(s) 23, 166, 256
Hin1I GRCGYC 1 cut(s) 267
Hin1II CATG 1 cut(s) 342
HpaII CCGG 4 cut(s) 60, 277, 298, 311
Hpy166II GTNNAC 1 cut(s) 232
Hpy188I TCNGA 3 cut(s) 13, 93, 156
Hpy188III TCNNGA 2 cut(s) 311, 339
Hpy8I GTNNAC 1 cut(s) 232
Hpy99I CGWCG 4 cut(s) 40, 134, 272, 286
HpyAV CCTTC 1 cut(s) 106
HpyCH4III ACNGT 1 cut(s) 130
HpyCH4IV ACGT 1 cut(s) 45
HpyCH4V TGCA 2 cut(s) 232, 243
HpyF10VI GCNNNNNNNGC 3 cut(s) 56, 191, 264
HpyF3I CTNAG 1 cut(s) 291
HpySE526I ACGT 1 cut(s) 45
Hsp92I GRCGYC 1 cut(s) 267
Hsp92II CATG 1 cut(s) 342
Kpn2I TCCGGA 1 cut(s) 310
Kzo9I GATC 2 cut(s) 39, 63
LpnPI CCDG 9 cut(s) 72, 73, 134, 161, 244, 278, 290, 311, 324
LweI GCATC 1 cut(s) 199
MaeI CTAG 1 cut(s) 320
MaeII ACGT 1 cut(s) 45
MalI GATC 2 cut(s) 41, 65
MboI GATC 2 cut(s) 39, 63
MboII GAAGA 1 cut(s) 327
MhlI GDGCHC 1 cut(s) 234
MmeI TCCRAC 1 cut(s) 71
MnlI CCTC 2 cut(s) 133, 152
MroI TCCGGA 1 cut(s) 310
MslI CAYNNNNRTG 1 cut(s) 131
MspI CCGG 4 cut(s) 60, 277, 298, 311
MspR9I CCNGG 2 cut(s) 61, 149
MvaI CCWGG 1 cut(s) 149
MvnI CGCG 1 cut(s) 204
MwoI GCNNNNNNNGC 3 cut(s) 56, 191, 264
NciI CCSGG 1 cut(s) 61
NdeII GATC 2 cut(s) 39, 63
NlaIII CATG 1 cut(s) 342
OliI CACNNNNGTG 1 cut(s) 131
PagI TCATGA 1 cut(s) 338
PceI AGGCCT 1 cut(s) 71
PcsI WCGNNNNNNNCGW 1 cut(s) 270
PkrI GCNGC 1 cut(s) 104
Ppu21I YACGTR 1 cut(s) 46
Psp6I CCWGG 1 cut(s) 147
PspGI CCWGG 1 cut(s) 147
PspPI GGNCC 2 cut(s) 93, 295
RsaI GTAC 1 cut(s) 191
RsaNI GTAC 1 cut(s) 190
RseI CAYNNNNRTG 1 cut(s) 131
SatI GCNGC 1 cut(s) 103
Sau3AI GATC 2 cut(s) 39, 63
Sau96I GGNCC 2 cut(s) 93, 295
ScrFI CCNGG 2 cut(s) 61, 149
SduI GDGCHC 1 cut(s) 234
SetI ASST 5 cut(s) 48, 98, 297, 321, 329
SfaNI GCATC 1 cut(s) 199
SinI GGWCC 2 cut(s) 93, 295
SmiMI CAYNNNNRTG 1 cut(s) 131
SseBI AGGCCT 1 cut(s) 71
SsiI CCGC 4 cut(s) 5, 102, 105, 202
SspMI CTAG 1 cut(s) 320
StuI AGGCCT 1 cut(s) 71
StyD4I CCNGG 2 cut(s) 59, 147
TaaI ACNGT 1 cut(s) 130
TaiI ACGT 1 cut(s) 48
TauI GCSGC 1 cut(s) 105
TscAI CASTG 1 cut(s) 24
TspDTI ATGAA 1 cut(s) 327
TspRI CASTG 1 cut(s) 24
VneI GTGCAC 1 cut(s) 230
VpaK11BI GGWCC 2 cut(s) 93, 295
XspI CTAG 1 cut(s) 320
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.