MD15G1011100.v1.1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr15
OG0011876
Physical Location & Seq
Reverse (-)
611594 .. 611929
336 bp
Loading structure...
UTR
Exon/CDS
Intron
MD15G1011100.v1.1.491

Sequence Viewer

Length: 336 bp
ATGGCGGTTTCCGACGCGGTGGTTAGGAACTTGACGATGATTTACGTGGCAGTCATTGTCGCGATCAAGGGGTACGGGGTGGCGATTGGGCAGAGCTTCGGCGGTGCCTTTGTGTTAATCCTCTCCACCGCCGTGGTGTGCCTTATCCTGTTCCTGACTCTGACGTGGGATGTCTCCCGCAAACCCACATATGCAGTTCCCGGCGACTACAATCCTCCAGTTGCTCATGAGTCGTGCAAGGGTGGTATTTGCTGGCACGGCGTGGCCGTCCGATCCTCGGCTTCTGATGTCCGTTTGAGGCTCCCTCAACAACTCAGTTGTGGTGGATTTTCGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

112

Amino Acids

11.73

Weight (kDa)

8.82

Isoelectric Point (pI)

48.11

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011876)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G75810
fragaria_vesca FvH4_2g38290
malus_domestica MD08G1011100.v1.1 MD15G1011100.v1.1
prunus_persica Prupe.1G363800_v2.0.a1 Prupe.1G363800_v2.0.a1
pyrus_communis pycom08g00980 pycom15g00950
rosa_chinensis RchiOBHm_Chr6g0303091
rosa_laevigata RLG00000011109
rosa_multiflora Rmu_sc0008911.1_g000002 Rmu_sc0009943.1_g000001
rosa_roxburghii Rroxscaffold_7G00165030
rosa_rugosa Rorug06G0319200
rosa_samantha Rh6AG432900 Rh6BG469800 Rh6DG432000
rosa_wichuraiana Rw1G004450 Rw6G037520

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 104
AccII CGCG 2 cut(s) 17, 62
AciI CCGC 5 cut(s) 5, 17, 102, 129, 178
AclWI GGATC 1 cut(s) 267
AcoI YGGCCR 1 cut(s) 264
AdeI CACNNNGTG 1 cut(s) 262
AfaI GTAC 1 cut(s) 74
AfiI CCNNNNNNNGG 1 cut(s) 277
AjiI CACGTC 1 cut(s) 165
AleI CACNNNNGTG 1 cut(s) 131
AluBI AGCT 1 cut(s) 96
AluI AGCT 1 cut(s) 96
Alw26I GTCTC 1 cut(s) 178
AlwI GGATC 1 cut(s) 267
AoxI GGCC 1 cut(s) 264
AsuC2I CCSGG 1 cut(s) 201
BanI GGYRCC 1 cut(s) 104
BceAI ACGGC 3 cut(s) 116, 251, 274
BcnI CCSGG 1 cut(s) 201
BcoDI GTCTC 1 cut(s) 178
Bme1390I CCNGG 1 cut(s) 201
BmgBI CACGTC 1 cut(s) 165
BmiI GGNNCC 2 cut(s) 106, 302
BmrFI CCNGG 1 cut(s) 201
BplI GAGNNNNNCTC 2 cut(s) 289, 321
BpmI CTGGAG 1 cut(s) 201
BpuMI CCSGG 1 cut(s) 201
BsaAI YACGTR 1 cut(s) 46
BsaJI CCNNGG 2 cut(s) 132, 276
Bsc4I CCNNNNNNNGG 1 cut(s) 277
Bse1I ACTGG 1 cut(s) 218
BseDI CCNNGG 2 cut(s) 132, 276
BseGI GGATG 1 cut(s) 175
BseLI CCNNNNNNNGG 1 cut(s) 277
BseMII CTCAG 1 cut(s) 328
BseNI ACTGG 1 cut(s) 218
Bsh1236I CGCG 2 cut(s) 17, 62
BshFI GGCC 1 cut(s) 266
BshNI GGYRCC 1 cut(s) 104
BsiSI CCGG 1 cut(s) 201
BslI CCNNNNNNNGG 1 cut(s) 277
BsmAI GTCTC 1 cut(s) 178
BsnI GGCC 1 cut(s) 266
Bsp143I GATC 2 cut(s) 63, 272
Bsp68I TCGCGA 1 cut(s) 62
BspACI CCGC 5 cut(s) 5, 17, 102, 129, 178
BspANI GGCC 1 cut(s) 266
BspCNI CTCAG 1 cut(s) 327
BspFNI CGCG 2 cut(s) 17, 62
BspHI TCATGA 1 cut(s) 226
BspLI GGNNCC 2 cut(s) 106, 302
BspPI GGATC 1 cut(s) 267
BspT107I GGYRCC 1 cut(s) 104
BsrI ACTGG 1 cut(s) 218
BssECI CCNNGG 2 cut(s) 132, 276
BssMI GATC 2 cut(s) 63, 272
BstBAI YACGTR 1 cut(s) 46
BstC8I GCNNGC 1 cut(s) 254
BstDEI CTNAG 1 cut(s) 314
BstDSI CCRYGG 1 cut(s) 132
BstF5I GGATG 1 cut(s) 175
BstFNI CGCG 2 cut(s) 17, 62
BstKTI GATC 2 cut(s) 66, 275
BstMAI GTCTC 1 cut(s) 178
BstMBI GATC 2 cut(s) 63, 272
BstMWI GCNNNNNNNGC 1 cut(s) 258
BstSCI CCNGG 1 cut(s) 199
BstUI CGCG 2 cut(s) 17, 62
BstXI CCANNNNNNTGG 1 cut(s) 133
BsuRI GGCC 1 cut(s) 266
BtgI CCRYGG 1 cut(s) 132
BtrI CACGTC 1 cut(s) 165
BtsCI GGATG 1 cut(s) 175
BtuMI TCGCGA 1 cut(s) 62
Cac8I GCNNGC 1 cut(s) 254
CciI TCATGA 1 cut(s) 226
CseI GACGC 1 cut(s) 23
Csp6I GTAC 1 cut(s) 73
CviAII CATG 1 cut(s) 227
CviJI RGCY 4 cut(s) 96, 266, 281, 301
CviKI_1 RGCY 4 cut(s) 96, 266, 281, 301
CviQI GTAC 1 cut(s) 73
DdeI CTNAG 1 cut(s) 314
DpnI GATC 2 cut(s) 65, 274
DpnII GATC 2 cut(s) 63, 272
DraIII CACNNNGTG 1 cut(s) 262
EaeI YGGCCR 1 cut(s) 264
FaeI CATG 1 cut(s) 230
FaiI YATR 3 cut(s) 190, 192, 228
FatI CATG 1 cut(s) 226
FauI CCCGC 1 cut(s) 185
FauNDI CATATG 1 cut(s) 190
FokI GGATG 1 cut(s) 182
GsuI CTGGAG 1 cut(s) 201
HaeIII GGCC 1 cut(s) 266
HapII CCGG 1 cut(s) 201
HgaI GACGC 1 cut(s) 23
Hin1II CATG 1 cut(s) 230
HinfI GANTC 2 cut(s) 157, 230
HpaII CCGG 1 cut(s) 201
Hpy188I TCNGA 4 cut(s) 13, 162, 272, 286
Hpy188III TCNNGA 3 cut(s) 61, 154, 227
Hpy99I CGWCG 1 cut(s) 17
HpyCH4IV ACGT 2 cut(s) 45, 164
HpyCH4V TGCA 2 cut(s) 194, 237
HpyF10VI GCNNNNNNNGC 1 cut(s) 258
HpyF3I CTNAG 1 cut(s) 314
HpySE526I ACGT 2 cut(s) 45, 164
Hsp92II CATG 1 cut(s) 230
Kzo9I GATC 2 cut(s) 63, 272
LmnI GCTCC 1 cut(s) 306
LpnPI CCDG 5 cut(s) 161, 167, 214, 231, 238
MaeII ACGT 2 cut(s) 45, 164
MalI GATC 2 cut(s) 65, 274
MboI GATC 2 cut(s) 63, 272
MlyI GAGTC 2 cut(s) 151, 239
MmeI TCCRAC 1 cut(s) 36
MnlI CCTC 5 cut(s) 131, 225, 286, 291, 315
MseI TTAA 1 cut(s) 116
MslI CAYNNNNRTG 1 cut(s) 131
MspI CCGG 1 cut(s) 201
MspR9I CCNGG 1 cut(s) 201
MvnI CGCG 2 cut(s) 17, 62
MwoI GCNNNNNNNGC 1 cut(s) 258
NciI CCSGG 1 cut(s) 201
NdeI CATATG 1 cut(s) 190
NdeII GATC 2 cut(s) 63, 272
NlaIII CATG 1 cut(s) 230
NlaIV GGNNCC 2 cut(s) 106, 302
NmeAIII GCCGAG 1 cut(s) 257
NruI TCGCGA 1 cut(s) 62
OliI CACNNNNGTG 1 cut(s) 131
PagI TCATGA 1 cut(s) 226
PcsI WCGNNNNNNNCGW 1 cut(s) 264
PleI GAGTC 2 cut(s) 151, 238
PpsI GAGTC 2 cut(s) 151, 238
Ppu21I YACGTR 1 cut(s) 46
PspN4I GGNNCC 2 cut(s) 106, 302
RruI TCGCGA 1 cut(s) 62
RsaI GTAC 1 cut(s) 74
RsaNI GTAC 1 cut(s) 73
RseI CAYNNNNRTG 1 cut(s) 131
SaqAI TTAA 1 cut(s) 116
Sau3AI GATC 2 cut(s) 63, 272
SchI GAGTC 2 cut(s) 151, 239
ScrFI CCNGG 1 cut(s) 201
SetI ASST 3 cut(s) 48, 98, 167
SmiMI CAYNNNNRTG 1 cut(s) 131
SsiI CCGC 5 cut(s) 5, 17, 102, 129, 178
StyD4I CCNGG 1 cut(s) 199
TaiI ACGT 2 cut(s) 48, 167
Tru1I TTAA 1 cut(s) 116
Tru9I TTAA 1 cut(s) 116
TspGWI ACGGA 1 cut(s) 281
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.