pycom08g00980

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr8
OG0011876
Physical Location & Seq
Reverse (-)
762001 .. 762339
339 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom08g00980.1

Sequence Viewer

Length: 339 bp
ATGGCGGTTTCTGACGCGGTGGTTAGGAACTTGACGACGATTTACGTGGCGCTCATCGTCGCCATCAAGGCGTACGGGGTGGCGTCTGGGCAGAGCTTCGGCGGTGCCTTTGTGTTAATCCTCTCCACAGCCGTGGTGTGCCTTATCCTGTTCCTGACTCTGACATGGGACGTCTCCCGTAAAGCCACTTATGCAGTTTCGCGCGACGACAATCCTCCTCCCGTTGCTCATGAGACGTGCAAGGGTGGTATTTGCTGGCACGGCGTGGCCGTCCGCTCGTCGGCTTCGGACGTCCGGTTTAGGCTCCCGCAACAAATCAGCTATGGAGGCTCTTCGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

113

Amino Acids

11.86

Weight (kDa)

8.96

Isoelectric Point (pI)

43.37

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0011876)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G75810
fragaria_vesca FvH4_2g38290
malus_domestica MD08G1011100.v1.1 MD15G1011100.v1.1
prunus_persica Prupe.1G363800_v2.0.a1 Prupe.1G363800_v2.0.a1
pyrus_communis pycom08g00980 pycom15g00950
rosa_chinensis RchiOBHm_Chr6g0303091
rosa_laevigata RLG00000011109
rosa_multiflora Rmu_sc0008911.1_g000002 Rmu_sc0009943.1_g000001
rosa_roxburghii Rroxscaffold_7G00165030
rosa_rugosa Rorug06G0319200
rosa_samantha Rh6AG432900 Rh6BG469800 Rh6DG432000
rosa_wichuraiana Rw1G004450 Rw6G037520

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 2 cut(s) 174, 294
AccB1I GGYRCC 1 cut(s) 104
AccBSI CCGCTC 1 cut(s) 276
AccII CGCG 3 cut(s) 17, 202, 204
AciI CCGC 5 cut(s) 5, 17, 102, 274, 308
AcoI YGGCCR 1 cut(s) 267
AcyI GRCGYC 3 cut(s) 83, 171, 291
AdeI CACNNNGTG 1 cut(s) 265
AfaI GTAC 1 cut(s) 74
AfiI CCNNNNNNNGG 1 cut(s) 280
AjiI CACGTC 1 cut(s) 237
AleI CACNNNNGTG 1 cut(s) 131
AluBI AGCT 2 cut(s) 96, 321
AluI AGCT 2 cut(s) 96, 321
Alw26I GTCTC 2 cut(s) 178, 227
AoxI GGCC 1 cut(s) 267
AspLEI GCGC 2 cut(s) 52, 204
BanI GGYRCC 1 cut(s) 104
BccI CCATC 1 cut(s) 71
BceAI ACGGC 3 cut(s) 116, 254, 277
BcoDI GTCTC 2 cut(s) 178, 227
BfoI RGCGCY 1 cut(s) 53
BglI GCCNNNNNGGC 1 cut(s) 68
BmgBI CACGTC 1 cut(s) 237
BmiI GGNNCC 2 cut(s) 106, 305
BsaAI YACGTR 1 cut(s) 46
BsaHI GRCGYC 3 cut(s) 83, 171, 291
BsaJI CCNNGG 1 cut(s) 132
BsaWI WCCGGW 1 cut(s) 294
Bsc4I CCNNNNNNNGG 1 cut(s) 280
BseDI CCNNGG 1 cut(s) 132
BseLI CCNNNNNNNGG 1 cut(s) 280
BseRI GAGGAG 1 cut(s) 207
Bsh1236I CGCG 3 cut(s) 17, 202, 204
BshFI GGCC 1 cut(s) 269
BshNI GGYRCC 1 cut(s) 104
BsiSI CCGG 1 cut(s) 295
BsiWI CGTACG 1 cut(s) 72
BslFI GGGAC 1 cut(s) 182
BslI CCNNNNNNNGG 1 cut(s) 280
BsmAI GTCTC 2 cut(s) 178, 227
BsmBI CGTCTC 2 cut(s) 178, 227
BsmFI GGGAC 1 cut(s) 182
BsnI GGCC 1 cut(s) 269
BspACI CCGC 5 cut(s) 5, 17, 102, 274, 308
BspANI GGCC 1 cut(s) 269
BspFNI CGCG 3 cut(s) 17, 202, 204
BspHI TCATGA 1 cut(s) 229
BspLI GGNNCC 2 cut(s) 106, 305
BspT107I GGYRCC 1 cut(s) 104
BsrBI CCGCTC 1 cut(s) 276
BssECI CCNNGG 1 cut(s) 132
BssNI GRCGYC 3 cut(s) 83, 171, 291
BstACI GRCGYC 3 cut(s) 83, 171, 291
BstBAI YACGTR 1 cut(s) 46
BstC8I GCNNGC 1 cut(s) 257
BstDSI CCRYGG 1 cut(s) 132
BstFNI CGCG 3 cut(s) 17, 202, 204
BstH2I RGCGCY 1 cut(s) 53
BstHHI GCGC 2 cut(s) 52, 204
BstMAI GTCTC 2 cut(s) 178, 227
BstMWI GCNNNNNNNGC 4 cut(s) 68, 191, 261, 327
BstUI CGCG 3 cut(s) 17, 202, 204
BstXI CCANNNNNNTGG 1 cut(s) 133
BsuRI GGCC 1 cut(s) 269
BtgI CCRYGG 1 cut(s) 132
BtrI CACGTC 1 cut(s) 237
Cac8I GCNNGC 1 cut(s) 257
CciI TCATGA 1 cut(s) 229
CfoI GCGC 2 cut(s) 52, 204
CseI GACGC 2 cut(s) 23, 72
Csp6I GTAC 1 cut(s) 73
CviAII CATG 2 cut(s) 165, 230
CviJI RGCY 8 cut(s) 96, 131, 185, 269, 284, 304, 321, 330
CviKI_1 RGCY 8 cut(s) 96, 131, 185, 269, 284, 304, 321, 330
CviQI GTAC 1 cut(s) 73
DraIII CACNNNGTG 1 cut(s) 265
EaeI YGGCCR 1 cut(s) 267
Esp3I CGTCTC 2 cut(s) 178, 227
FaeI CATG 2 cut(s) 168, 233
FaiI YATR 4 cut(s) 166, 192, 231, 324
FaqI GGGAC 1 cut(s) 182
FatI CATG 2 cut(s) 164, 229
FauI CCCGC 1 cut(s) 315
GlaI GCGC 2 cut(s) 51, 203
HaeII RGCGCY 1 cut(s) 53
HaeIII GGCC 1 cut(s) 269
HapII CCGG 1 cut(s) 295
HgaI GACGC 2 cut(s) 23, 72
HhaI GCGC 2 cut(s) 52, 204
Hin1I GRCGYC 3 cut(s) 83, 171, 291
Hin1II CATG 2 cut(s) 168, 233
Hin6I GCGC 2 cut(s) 50, 202
HinP1I GCGC 2 cut(s) 50, 202
HinfI GANTC 1 cut(s) 157
HpaII CCGG 1 cut(s) 295
Hpy188I TCNGA 3 cut(s) 13, 162, 289
Hpy188III TCNNGA 2 cut(s) 154, 230
Hpy99I CGWCG 4 cut(s) 40, 62, 209, 283
HpyCH4IV ACGT 4 cut(s) 45, 171, 236, 291
HpyCH4V TGCA 2 cut(s) 194, 240
HpyF10VI GCNNNNNNNGC 4 cut(s) 68, 191, 261, 327
HpySE526I ACGT 4 cut(s) 45, 171, 236, 291
Hsp92I GRCGYC 3 cut(s) 83, 171, 291
Hsp92II CATG 2 cut(s) 168, 233
HspAI GCGC 2 cut(s) 50, 202
LmnI GCTCC 1 cut(s) 309
LpnPI CCDG 5 cut(s) 72, 161, 167, 241, 308
MaeII ACGT 4 cut(s) 45, 171, 236, 291
MbiI CCGCTC 1 cut(s) 276
MboII GAAGA 1 cut(s) 324
MlyI GAGTC 1 cut(s) 151
MnlI CCTC 4 cut(s) 131, 225, 228, 320
MseI TTAA 1 cut(s) 116
MslI CAYNNNNRTG 1 cut(s) 131
MspI CCGG 1 cut(s) 295
MvnI CGCG 3 cut(s) 17, 202, 204
MwoI GCNNNNNNNGC 4 cut(s) 68, 191, 261, 327
NlaIII CATG 2 cut(s) 168, 233
NlaIV GGNNCC 2 cut(s) 106, 305
OliI CACNNNNGTG 1 cut(s) 131
PagI TCATGA 1 cut(s) 229
PcsI WCGNNNNNNNCGW 1 cut(s) 267
Pfl23II CGTACG 1 cut(s) 72
PleI GAGTC 1 cut(s) 151
PpsI GAGTC 1 cut(s) 151
Ppu21I YACGTR 1 cut(s) 46
PspLI CGTACG 1 cut(s) 72
PspN4I GGNNCC 2 cut(s) 106, 305
RsaI GTAC 1 cut(s) 74
RsaNI GTAC 1 cut(s) 73
RseI CAYNNNNRTG 1 cut(s) 131
SaqAI TTAA 1 cut(s) 116
SchI GAGTC 1 cut(s) 151
SetI ASST 6 cut(s) 48, 98, 174, 239, 294, 323
SmiMI CAYNNNNRTG 1 cut(s) 131
SsiI CCGC 5 cut(s) 5, 17, 102, 274, 308
TaiI ACGT 4 cut(s) 48, 174, 239, 294
Tru1I TTAA 1 cut(s) 116
Tru9I TTAA 1 cut(s) 116
ZraI GACGTC 2 cut(s) 172, 292
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.