Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0015274

Physical Location & Seq

Genomic Coordinates Reverse (-)

28547786 .. 28549586

Gene Structure 1801 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G76080.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 909 bp

ATGGCCACCGTCGCTAACTTCTTAGCCAAACCAATCTCCACCGTAGTCCCACGGCCATCCTCCGCCGTTGCTTCGACCTCCTCCTTCGTATTCTTTAACCATAAAACTAATCCTCTGTTCCGGAGGAAAAACCTCCCGAAAAGATTATTCTCCGCCGTGAAAATAAAGGCTGGAGCGGCGTCTCCGGGAAAGGTGGGTACACCACCGGCGAATGACGAGAAGGTACAAAAGATTCACAGCGGAGAGGAATTCGACGTAGCGTTGAAAAATGCGAAGAGCAAACTCGTGGTTGCAGAGTTTGCTACGAGTAAGAGTGATCAGAGTAATAAGATATATCCGTTTATGGTGGAACTGAGCAGGACCTGTAACGACGTCGTTTTCTTGCTCGTCATGGGTGATGAATCTGACAAGACCAGAGAACTCTGTCGGAGAGAGAAGATTGAGAAAGTTCCTCACTTTAGCTTTTATAAGAGCATGGAGAAAATACACGAGGAAGAAGGTATTGAACCGGACCAGTTAATGGGAGACGTTCTATACTACGGAGACAACCACTCTGCGGTGGTGCAGCTGCACGGCCGACCTGACGTGGAAAAGCTGATCGACGAGAATCGCACTGGAGGCAAGCTGATCGTGCTTGACGTTGGTCTAAAACATTGTGGTCCTTGCGTTAAAGTGTATCCGACCGTGCTGAAACTGTCCCGGTCAATGTCCGAGACAGTCGTATTCGCTAGAATGAACGGTGACGAGAACGATAGTTGTATGGAGTTTCTCAAGGACATGAATGTTATCGAAGTTCCAACTTTCTTGTTCATTAGAGACGGCGAGATTCGTGGCCGTTATGTTGGTTCCGGTAAAGGAGAACTCATTGGAGAGATTCTTCGGTACTCAGGCGTTCGTGTCACTTATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004791 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006950 GO:0006979 GO:0008150 GO:0008152 GO:0009414 GO:0009415 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009570 GO:0009628 GO:0009636 GO:0009941 GO:0009987 GO:0010035 GO:0015035 GO:0015036 GO:0016209 GO:0016491 GO:0016651 GO:0016667 GO:0016668 GO:0016671 GO:0019725 GO:0031967 GO:0031975 GO:0033554 GO:0034599 GO:0042221 GO:0042592 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0045454 GO:0047134 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0055114 GO:0065007 GO:0065008 GO:0070887 GO:0097237 GO:0098754 GO:0098869 GO:1901700 GO:1990748

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Thioredoxin

Protein Analysis

302

Amino Acids

33.68

Weight (kDa)

8.66

Isoelectric Point (pI)

35.51

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Thioredoxin	PF00085	78 - 173	3.4e-06	Thioredoxin
Thioredoxin	PF00085	208 - 287	4.5e-10	Thioredoxin

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015274)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G76080
fragaria_vesca	FvH4_2g37930
malus_domestica	MD08G1007500.v1.1 MD15G1006700.v1.1
prunus_persica	Prupe.1G359300_v2.0.a1
pyrus_communis	pycom08g00610 pycom15g00530
rosa_chinensis	RchiOBHm_Chr6g0303681
rosa_laevigata	RLG00000011057
rosa_roxburghii	Rroxscaffold_7G00164490
rosa_rugosa	Rorug06G0323900
rosa_samantha	Rh6AG438200 Rh6BG464900 Rh6CG450500 Rh6DG437100
rosa_wichuraiana	Rw6G037920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	468
AatII	GACGTC	1 cut(s)	375
AccB7I	CCANNNNNTGG	1 cut(s)	520
AccBSI	CCGCTC	1 cut(s)	176
AccIII	TCCGGA	1 cut(s)	120
AciI	CCGC	5 cut(s)	63, 153, 176, 240, 557
AcoI	YGGCCR	4 cut(s)	3, 53, 574, 832
AcsI	RAATTY	1 cut(s)	248
AcyI	GRCGYC	2 cut(s)	179, 372
AfaI	GTAC	3 cut(s)	199, 225, 884
AfiI	CCNNNNNNNGG	2 cut(s)	520, 556
AgsI	TTSAA	2 cut(s)	265, 506
AjiI	CACGTC	1 cut(s)	586
AluBI	AGCT	4 cut(s)	462, 568, 595, 625
AluI	AGCT	4 cut(s)	462, 568, 595, 625
Alw26I	GTCTC	5 cut(s)	186, 519, 537, 707, 810
AlwNI	CAGNNNCTG	1 cut(s)	363
Aor13HI	TCCGGA	1 cut(s)	120
AoxI	GGCC	4 cut(s)	3, 53, 574, 832
ApeKI	GCWGC	2 cut(s)	565, 568
ApoI	RAATTY	1 cut(s)	248
AspS9I	GGNCC	3 cut(s)	360, 511, 659
AsuC2I	CCSGG	2 cut(s)	186, 700
AsuHPI	GGTGA	2 cut(s)	407, 752
AvaII	GGWCC	3 cut(s)	360, 511, 659
BalI	TGGCCA	1 cut(s)	5
BauI	CACGAG	2 cut(s)	284, 488
BbvI	GCAGC	2 cut(s)	555, 577
BccI	CCATC	1 cut(s)	64
BceAI	ACGGC	6 cut(s)	50, 68, 140, 589, 819, 835
BcgI	CGANNNNNNTGC	2 cut(s)	610, 644
BciVI	GTATCC	1 cut(s)	687
BclI	TGATCA	1 cut(s)	316
BcnI	CCSGG	2 cut(s)	186, 700
BcoDI	GTCTC	5 cut(s)	186, 519, 537, 707, 810
BfaI	CTAG	1 cut(s)	729
BfuI	GTATCC	1 cut(s)	687
BisI	GCNGC	3 cut(s)	177, 566, 569
BlsI	GCNGC	3 cut(s)	178, 567, 570
Bme1390I	CCNGG	2 cut(s)	186, 700
Bme18I	GGWCC	3 cut(s)	360, 511, 659
BmgBI	CACGTC	1 cut(s)	586
BmgT120I	GGNCC	3 cut(s)	360, 511, 659
BmiI	GGNNCC	1 cut(s)	847
BmrFI	CCNGG	2 cut(s)	186, 700
BoxI	GACNNNNGTC	1 cut(s)	642
BpmI	CTGGAG	2 cut(s)	192, 636
BpuEI	CTTGAG	1 cut(s)	755
BpuMI	CCSGG	2 cut(s)	186, 700
BsaHI	GRCGYC	2 cut(s)	179, 372
BsaJI	CCNNGG	1 cut(s)	50
BsaWI	WCCGGW	3 cut(s)	120, 508, 848
Bsc4I	CCNNNNNNNGG	2 cut(s)	520, 556
Bse118I	RCCGGY	1 cut(s)	205
Bse1I	ACTGG	2 cut(s)	514, 619
BseAI	TCCGGA	1 cut(s)	120
BseDI	CCNNGG	1 cut(s)	50
BseGI	GGATG	1 cut(s)	56
BseLI	CCNNNNNNNGG	2 cut(s)	520, 556
BseMII	CTCAG	2 cut(s)	344, 900
BseNI	ACTGG	2 cut(s)	514, 619
BseRI	GAGGAG	1 cut(s)	70
BseX3I	CGGCCG	1 cut(s)	574
BseXI	GCAGC	2 cut(s)	555, 577
BsgI	GTGCAG	2 cut(s)	554, 584
Bsh1285I	CGRYCG	2 cut(s)	577, 684
BshFI	GGCC	4 cut(s)	5, 55, 576, 834
BsiEI	CGRYCG	2 cut(s)	577, 684
BsiSI	CCGG	6 cut(s)	121, 185, 206, 509, 700, 849
BslFI	GGGAC	2 cut(s)	32, 682
BslI	CCNNNNNNNGG	2 cut(s)	520, 556
BsmAI	GTCTC	5 cut(s)	186, 519, 537, 707, 810
BsmBI	CGTCTC	3 cut(s)	186, 519, 810
BsmFI	GGGAC	2 cut(s)	32, 682
BsnI	GGCC	4 cut(s)	5, 55, 576, 834
Bsp13I	TCCGGA	1 cut(s)	120
Bsp143I	GATC	3 cut(s)	316, 597, 627
BspACI	CCGC	5 cut(s)	63, 153, 176, 240, 557
BspANI	GGCC	4 cut(s)	5, 55, 576, 834
BspCNI	CTCAG	2 cut(s)	345, 899
BspEI	TCCGGA	1 cut(s)	120
BspLI	GGNNCC	1 cut(s)	847
BspQI	GCTCTTC	1 cut(s)	269
BsrBI	CCGCTC	1 cut(s)	176
BsrFI	RCCGGY	1 cut(s)	205
BsrI	ACTGG	2 cut(s)	514, 619
BssAI	RCCGGY	1 cut(s)	205
BssECI	CCNNGG	1 cut(s)	50
BssMI	GATC	3 cut(s)	316, 597, 627
BssNI	GRCGYC	2 cut(s)	179, 372
BssSI	CACGAG	2 cut(s)	284, 488
Bst2BI	CACGAG	2 cut(s)	284, 488
Bst4CI	ACNGT	6 cut(s)	10, 43, 685, 696, 718, 740
Bst6I	CTCTTC	1 cut(s)	269
BstACI	GRCGYC	2 cut(s)	179, 372
BstAPI	GCANNNNNTGC	1 cut(s)	299
BstC8I	GCNNGC	1 cut(s)	623
BstDEI	CTNAG	3 cut(s)	22, 353, 886
BstDSI	CCRYGG	1 cut(s)	50
BstF5I	GGATG	1 cut(s)	56
BstKTI	GATC	3 cut(s)	319, 600, 630
BstMAI	GTCTC	5 cut(s)	186, 519, 537, 707, 810
BstMBI	GATC	3 cut(s)	316, 597, 627
BstMCI	CGRYCG	2 cut(s)	577, 684
BstMWI	GCNNNNNNNGC	5 cut(s)	11, 176, 299, 618, 631
BstPAI	GACNNNNGTC	1 cut(s)	642
BstSCI	CCNGG	2 cut(s)	184, 698
BstV1I	GCAGC	2 cut(s)	555, 577
BstZI	CGGCCG	1 cut(s)	574
BsuI	GTATCC	1 cut(s)	687
BsuRI	GGCC	4 cut(s)	5, 55, 576, 834
BtgI	CCRYGG	1 cut(s)	50
BtrI	CACGTC	1 cut(s)	586
BtsCI	GGATG	1 cut(s)	56
BtsIMutI	CAGTG	1 cut(s)	612
Cac8I	GCNNGC	1 cut(s)	623
CaiI	CAGNNNCTG	1 cut(s)	363
Cfr10I	RCCGGY	1 cut(s)	205
Cfr13I	GGNCC	3 cut(s)	360, 511, 659
CseI	GACGC	1 cut(s)	168
Csp6I	GTAC	3 cut(s)	198, 224, 883
CviAII	CATG	3 cut(s)	391, 475, 778
CviQI	GTAC	3 cut(s)	198, 224, 883
DdeI	CTNAG	3 cut(s)	22, 353, 886
DpnI	GATC	3 cut(s)	318, 599, 629
DpnII	GATC	3 cut(s)	316, 597, 627
EaeI	YGGCCR	4 cut(s)	3, 53, 574, 832
EagI	CGGCCG	1 cut(s)	574
Eam1104I	CTCTTC	1 cut(s)	269
EarI	CTCTTC	1 cut(s)	269
EciI	GGCGGA	2 cut(s)	52, 142
EclXI	CGGCCG	1 cut(s)	574
Eco47I	GGWCC	3 cut(s)	360, 511, 659
Eco52I	CGGCCG	1 cut(s)	574
EcoO109I	RGGNCCY	1 cut(s)	360
EcoRI	GAATTC	1 cut(s)	248
Esp3I	CGTCTC	3 cut(s)	186, 519, 810
FaeI	CATG	3 cut(s)	394, 478, 781
FaqI	GGGAC	2 cut(s)	32, 682
FatI	CATG	3 cut(s)	390, 474, 777
FbaI	TGATCA	1 cut(s)	316
Fnu4HI	GCNGC	3 cut(s)	177, 566, 569
FokI	GGATG	1 cut(s)	43
Fsp4HI	GCNGC	3 cut(s)	177, 566, 569
FspBI	CTAG	1 cut(s)	729
GluI	GCNGC	3 cut(s)	177, 566, 569
GsuI	CTGGAG	2 cut(s)	192, 636
HaeIII	GGCC	4 cut(s)	5, 55, 576, 834
HapII	CCGG	6 cut(s)	121, 185, 206, 509, 700, 849
HgaI	GACGC	1 cut(s)	168
Hin1I	GRCGYC	2 cut(s)	179, 372
Hin1II	CATG	3 cut(s)	394, 478, 781
HinfI	GANTC	5 cut(s)	232, 401, 607, 826, 874
HpaII	CCGG	6 cut(s)	121, 185, 206, 509, 700, 849
HphI	GGTGA	2 cut(s)	407, 752
Hpy166II	GTNNAC	1 cut(s)	200
Hpy188I	TCNGA	5 cut(s)	321, 406, 429, 681, 712
Hpy188III	TCNNGA	2 cut(s)	121, 136
Hpy8I	GTNNAC	1 cut(s)	200
Hpy99I	CGWCG	5 cut(s)	14, 257, 374, 377, 605
HpyAV	CCTTC	3 cut(s)	94, 214, 491
HpyCH4III	ACNGT	6 cut(s)	10, 43, 685, 696, 718, 740
HpyCH4IV	ACGT	5 cut(s)	255, 372, 528, 585, 639
HpyCH4V	TGCA	3 cut(s)	293, 565, 571
HpyF10VI	GCNNNNNNNGC	5 cut(s)	11, 176, 299, 618, 631
HpyF3I	CTNAG	3 cut(s)	22, 353, 886
HpySE526I	ACGT	5 cut(s)	255, 372, 528, 585, 639
Hsp92I	GRCGYC	2 cut(s)	179, 372
Hsp92II	CATG	3 cut(s)	394, 478, 781
Kpn2I	TCCGGA	1 cut(s)	120
Ksp22I	TGATCA	1 cut(s)	316
Kzo9I	GATC	3 cut(s)	316, 597, 627
LguI	GCTCTTC	1 cut(s)	269
LmnI	GCTCC	1 cut(s)	173
Lsp1109I	GCAGC	2 cut(s)	555, 577
MaeI	CTAG	1 cut(s)	729
MaeII	ACGT	5 cut(s)	255, 372, 528, 585, 639
MaeIII	GTNAC	3 cut(s)	365, 740, 898
MalI	GATC	3 cut(s)	318, 599, 629
MbiI	CCGCTC	1 cut(s)	176
MboI	GATC	3 cut(s)	316, 597, 627
MboII	GAAGA	4 cut(s)	286, 448, 506, 869
MlsI	TGGCCA	1 cut(s)	5
MluCI	AATT	1 cut(s)	248
MluNI	TGGCCA	1 cut(s)	5
MmeI	TCCRAC	3 cut(s)	407, 704, 821
Mox20I	TGGCCA	1 cut(s)	5
MroI	TCCGGA	1 cut(s)	120
MscI	TGGCCA	1 cut(s)	5
MseI	TTAA	4 cut(s)	96, 518, 669, 907
Msp20I	TGGCCA	1 cut(s)	5
MspA1I	CMGCKG	2 cut(s)	240, 568
MspI	CCGG	6 cut(s)	121, 185, 206, 509, 700, 849
MspR9I	CCNGG	2 cut(s)	186, 700
MwoI	GCNNNNNNNGC	5 cut(s)	11, 176, 299, 618, 631
NciI	CCSGG	2 cut(s)	186, 700
NdeII	GATC	3 cut(s)	316, 597, 627
NlaIII	CATG	3 cut(s)	394, 478, 781
NlaIV	GGNNCC	1 cut(s)	847
NmuCI	GTSAC	2 cut(s)	740, 898
PciSI	GCTCTTC	1 cut(s)	269
PcsI	WCGNNNNNNNCGW	1 cut(s)	636
PfeI	GAWTC	5 cut(s)	232, 401, 607, 826, 874
PflMI	CCANNNNNTGG	1 cut(s)	520
PfoI	TCCNGGA	1 cut(s)	184
PkrI	GCNGC	3 cut(s)	178, 567, 570
PpuMI	RGGWCCY	1 cut(s)	360
PshAI	GACNNNNGTC	1 cut(s)	642
PsiI	TTATAA	1 cut(s)	468
Psp5II	RGGWCCY	1 cut(s)	360
PspN4I	GGNNCC	1 cut(s)	847
PspPI	GGNCC	3 cut(s)	360, 511, 659
PspPPI	RGGWCCY	1 cut(s)	360
PstNI	CAGNNNCTG	1 cut(s)	363
PvuII	CAGCTG	1 cut(s)	568
RsaI	GTAC	3 cut(s)	199, 225, 884
RsaNI	GTAC	3 cut(s)	198, 224, 883
SapI	GCTCTTC	1 cut(s)	269
SaqAI	TTAA	4 cut(s)	96, 518, 669, 907
SatI	GCNGC	3 cut(s)	177, 566, 569
Sau3AI	GATC	3 cut(s)	316, 597, 627
Sau96I	GGNCC	3 cut(s)	360, 511, 659
ScrFI	CCNGG	2 cut(s)	186, 700
SgrAI	CRCCGGYG	1 cut(s)	205
SinI	GGWCC	3 cut(s)	360, 511, 659
SmlI	CTYRAG	1 cut(s)	770
SmoI	CTYRAG	1 cut(s)	770
Sse9I	AATT	1 cut(s)	248
SsiI	CCGC	5 cut(s)	63, 153, 176, 240, 557
SspMI	CTAG	1 cut(s)	729
StyD4I	CCNGG	2 cut(s)	184, 698
TaaI	ACNGT	6 cut(s)	10, 43, 685, 696, 718, 740
TaiI	ACGT	5 cut(s)	258, 375, 531, 588, 642
TaqI	TCGA	4 cut(s)	74, 252, 600, 789
TasI	AATT	1 cut(s)	248
TauI	GCSGC	1 cut(s)	179
TfiI	GAWTC	5 cut(s)	232, 401, 607, 826, 874
Tru1I	TTAA	4 cut(s)	96, 518, 669, 907
Tru9I	TTAA	4 cut(s)	96, 518, 669, 907
TscAI	CASTG	1 cut(s)	619
TseFI	GTSAC	2 cut(s)	740, 898
TseI	GCWGC	2 cut(s)	565, 568
Tsp45I	GTSAC	2 cut(s)	740, 898
TspDTI	ATGAA	4 cut(s)	414, 749, 794, 799
TspGWI	ACGGA	2 cut(s)	327, 555
TspRI	CASTG	1 cut(s)	619
Van91I	CCANNNNNTGG	1 cut(s)	520
VpaK11BI	GGWCC	3 cut(s)	360, 511, 659
XapI	RAATTY	1 cut(s)	248
XspI	CTAG	1 cut(s)	729
ZraI	GACGTC	1 cut(s)	373

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.