Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr8

Orthogroup ID

OG0015274

Physical Location & Seq

Genomic Coordinates Forward (+)

510979 .. 511875

Gene Structure 897 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom08g00610.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 897 bp

ATGGCGACCATCACAAATTTCATAGTCAAACCCCTTTCGTCATCGCAATTTTCAATCCCAAGAACAAGTTGTTTTGTTGGTAAAGGTTTAAGTTTGGTGACGAAGCTTAAACCTTTACCAACAAAACTTGAAACAAAAAGAAACCAATTCCGCAACTTCACCATCAACGCCACAGCCACCGCCGGCACTAAAGAGGTTCAAAGTGACGAGAGAGTTCAGCGAGTGCACAGCATCCAGGAATTCGACAAGGCCCTCGAGTTGGCCAAAAACAAGCTCGTTGTCGTCGAGTTTGCCGCCAGCCACAGCGCCCAGAGCCAAAAAATGTACCCGTTCATGGTCGACCTCAGCCGCACGTGTAACGACGTAGAGTTTTTATTGGTCATGGGTGACGAGTCGGAAGACACCCGAGAGCTCTGCAGGAGAGAGAACATCGACAAGGTCCCCCACTTCAGCTTCTACAAGAGCATGGAGAAGATTCACGAGGAGGACGGAATAGACGGCGATCAGCTGAGGGGGGACGTGTTGTATTACGGCGACAACCACTCCGCGGTGGTTCAGCTGCATCAGAAGGAGGACGTGGAGAAGCTGATTGAGGAGCATAAGGTGGACGGCAAGCTGATTGTGCTTGACGTGGGGCTCAAGCATTGTGGGCCGTGTGTCAAGGTGTATCCGACGGTGGTGAAGCTGTCGAAGCGGATGGACACGGTGGTGTTTGCGAGGATGAACGGCGATGAGAATGACAGCTGCCTGCAGTTCCTCAAGGACATGGAGGTGGTGGAGGTGCCTACTTTCTTGTTCATTAGAGATGGTGAAATTTGCGGAAGATATGTGGGTTCTGGTAAAGGAGAGCTTATTGGTGAAATTCTGAGATACCAAGGAGTCCGCGTGACTTACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004791 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006950 GO:0006979 GO:0008150 GO:0008152 GO:0009414 GO:0009415 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009570 GO:0009628 GO:0009636 GO:0009941 GO:0009987 GO:0010035 GO:0015035 GO:0015036 GO:0016209 GO:0016491 GO:0016651 GO:0016667 GO:0016668 GO:0016671 GO:0019725 GO:0031967 GO:0031975 GO:0033554 GO:0034599 GO:0042221 GO:0042592 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0045454 GO:0047134 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0055114 GO:0065007 GO:0065008 GO:0070887 GO:0097237 GO:0098754 GO:0098869 GO:1901700 GO:1990748

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Thioredoxin

Protein Analysis

299

Amino Acids

33.76

Weight (kDa)

6.1

Isoelectric Point (pI)

30.31

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Thioredoxin	PF00085	76 - 166	2e-07	Thioredoxin
Thioredoxin	PF00085	193 - 283	4.3e-10	Thioredoxin

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015274)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G76080
fragaria_vesca	FvH4_2g37930
malus_domestica	MD08G1007500.v1.1 MD15G1006700.v1.1
prunus_persica	Prupe.1G359300_v2.0.a1
pyrus_communis	pycom08g00610 pycom15g00530
rosa_chinensis	RchiOBHm_Chr6g0303681
rosa_laevigata	RLG00000011057
rosa_roxburghii	Rroxscaffold_7G00164490
rosa_rugosa	Rorug06G0323900
rosa_samantha	Rh6AG438200 Rh6BG464900 Rh6CG450500 Rh6DG437100
rosa_wichuraiana	Rw6G037920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	781
AccI	GTMKAC	1 cut(s)	339
AccII	CGCG	2 cut(s)	548, 885
AciI	CCGC	9 cut(s)	151, 180, 294, 349, 546, 548, 694, 819, 883
AcoI	YGGCCR	1 cut(s)	261
AcsI	RAATTY	4 cut(s)	16, 239, 813, 861
AcuI	CTGAAG	1 cut(s)	433
AcvI	CACGTG	1 cut(s)	354
AfaI	GTAC	1 cut(s)	326
AfiI	CCNNNNNNNGG	3 cut(s)	259, 334, 547
AflIII	ACRYGT	2 cut(s)	353, 519
AgsI	TTSAA	3 cut(s)	54, 131, 200
AjiI	CACGTC	3 cut(s)	520, 577, 631
AjnI	CCWGG	1 cut(s)	234
AleI	CACNNNNGTG	1 cut(s)	707
Alw21I	GWGCWC	2 cut(s)	228, 414
Alw44I	GTGCAC	1 cut(s)	224
Ama87I	CYCGRG	2 cut(s)	254, 405
AoxI	GGCC	3 cut(s)	249, 261, 650
ApaLI	GTGCAC	1 cut(s)	224
ApeKI	GCWGC	2 cut(s)	559, 744
ApoI	RAATTY	4 cut(s)	16, 239, 813, 861
AspLEI	GCGC	1 cut(s)	308
AspS9I	GGNCC	3 cut(s)	250, 439, 650
AsuHPI	GGTGA	6 cut(s)	109, 151, 398, 691, 821, 869
AvaI	CYCGRG	2 cut(s)	254, 405
AvaII	GGWCC	1 cut(s)	439
BaeGI	GKGCMC	1 cut(s)	228
BalI	TGGCCA	1 cut(s)	263
BanI	GGYRCC	1 cut(s)	781
BanII	GRGCYC	2 cut(s)	414, 639
BauI	CACGAG	1 cut(s)	479
BbrPI	CACGTG	1 cut(s)	354
BbsI	GAAGAC	1 cut(s)	405
Bbv12I	GWGCWC	2 cut(s)	228, 414
BbvCI	CCTCAGC	2 cut(s)	344, 509
BbvI	GCAGC	2 cut(s)	546, 731
BccI	CCATC	4 cut(s)	17, 170, 691, 800
BceAI	ACGGC	5 cut(s)	514, 547, 625, 637, 742
BcgI	CGANNNNNNTGC	2 cut(s)	396, 430
BciT130I	CCWGG	1 cut(s)	236
BciVI	GTATCC	1 cut(s)	678
BfaI	CTAG	1 cut(s)	895
BfmI	CTRYAG	2 cut(s)	415, 749
BfoI	RGCGCY	1 cut(s)	309
BfuI	GTATCC	1 cut(s)	678
BisI	GCNGC	4 cut(s)	294, 349, 560, 745
BlsI	GCNGC	4 cut(s)	295, 350, 561, 746
Bme1390I	CCNGG	1 cut(s)	236
Bme18I	GGWCC	1 cut(s)	439
BmeT110I	CYCGRG	2 cut(s)	254, 405
BmgBI	CACGTC	3 cut(s)	520, 577, 631
BmgT120I	GGNCC	3 cut(s)	250, 439, 650
BmiI	GGNNCC	2 cut(s)	441, 783
BmrFI	CCNGG	1 cut(s)	236
BmsI	GCATC	2 cut(s)	240, 571
BpiI	GAAGAC	1 cut(s)	405
Bpu10I	CCTNAGC	2 cut(s)	344, 509
BpuEI	CTTGAG	2 cut(s)	623, 743
BsaAI	YACGTR	1 cut(s)	354
BsaJI	CCNNGG	2 cut(s)	546, 874
BsaXI	ACNNNNNCTCC	3 cut(s)	527, 557, 870
Bsc4I	CCNNNNNNNGG	3 cut(s)	259, 334, 547
Bse118I	RCCGGY	1 cut(s)	182
BseBI	CCWGG	1 cut(s)	236
BseDI	CCNNGG	2 cut(s)	546, 874
BseGI	GGATG	3 cut(s)	231, 702, 726
BseLI	CCNNNNNNNGG	3 cut(s)	259, 334, 547
BseMII	CTCAG	3 cut(s)	358, 500, 857
BseRI	GAGGAG	2 cut(s)	497, 608
BseSI	GKGCMC	1 cut(s)	228
BseXI	GCAGC	2 cut(s)	546, 731
Bsh1236I	CGCG	2 cut(s)	548, 885
BshFI	GGCC	3 cut(s)	251, 263, 652
BshNI	GGYRCC	1 cut(s)	781
BsiHKAI	GWGCWC	2 cut(s)	228, 414
BsiHKCI	CYCGRG	2 cut(s)	254, 405
BsiSI	CCGG	1 cut(s)	183
BslFI	GGGAC	2 cut(s)	425, 530
BslI	CCNNNNNNNGG	3 cut(s)	259, 334, 547
BsmFI	GGGAC	2 cut(s)	425, 530
BsnI	GGCC	3 cut(s)	251, 263, 652
BsoBI	CYCGRG	2 cut(s)	254, 405
Bsp1286I	GDGCHC	3 cut(s)	228, 414, 639
Bsp143I	GATC	1 cut(s)	502
BspACI	CCGC	9 cut(s)	151, 180, 294, 349, 546, 548, 694, 819, 883
BspANI	GGCC	3 cut(s)	251, 263, 652
BspCNI	CTCAG	3 cut(s)	357, 501, 858
BspFNI	CGCG	2 cut(s)	548, 885
BspLI	GGNNCC	2 cut(s)	441, 783
BspMAI	CTGCAG	2 cut(s)	419, 753
BspT107I	GGYRCC	1 cut(s)	781
BsrFI	RCCGGY	1 cut(s)	182
BssAI	RCCGGY	1 cut(s)	182
BssECI	CCNNGG	2 cut(s)	546, 874
BssMI	GATC	1 cut(s)	502
BssSI	CACGAG	1 cut(s)	479
BssT1I	CCWWGG	1 cut(s)	874
Bst2BI	CACGAG	1 cut(s)	479
Bst2UI	CCWGG	1 cut(s)	236
Bst4CI	ACNGT	2 cut(s)	676, 706
BstBAI	YACGTR	1 cut(s)	354
BstC8I	GCNNGC	4 cut(s)	184, 298, 614, 749
BstDEI	CTNAG	3 cut(s)	344, 509, 866
BstDSI	CCRYGG	1 cut(s)	546
BstF5I	GGATG	3 cut(s)	231, 702, 726
BstFNI	CGCG	2 cut(s)	548, 885
BstH2I	RGCGCY	1 cut(s)	309
BstHHI	GCGC	1 cut(s)	308
BstKTI	GATC	1 cut(s)	505
BstMBI	GATC	1 cut(s)	502
BstMWI	GCNNNNNNNGC	4 cut(s)	312, 622, 649, 691
BstNI	CCWGG	1 cut(s)	236
BstSCI	CCNGG	1 cut(s)	234
BstSFI	CTRYAG	2 cut(s)	415, 749
BstSLI	GKGCMC	1 cut(s)	228
BstUI	CGCG	2 cut(s)	548, 885
BstV1I	GCAGC	2 cut(s)	546, 731
BstV2I	GAAGAC	1 cut(s)	405
BsuI	GTATCC	1 cut(s)	678
BsuRI	GGCC	3 cut(s)	251, 263, 652
BtgI	CCRYGG	1 cut(s)	546
BtgZI	GCGATG	2 cut(s)	27, 744
BtrI	CACGTC	3 cut(s)	520, 577, 631
BtsCI	GGATG	3 cut(s)	231, 702, 726
Cac8I	GCNNGC	4 cut(s)	184, 298, 614, 749
CfoI	GCGC	1 cut(s)	308
Cfr10I	RCCGGY	1 cut(s)	182
Cfr13I	GGNCC	3 cut(s)	250, 439, 650
Cfr42I	CCGCGG	1 cut(s)	549
Csp6I	GTAC	1 cut(s)	325
CspCI	CAANNNNNGTGG	2 cut(s)	628, 663
CviAII	CATG	4 cut(s)	334, 382, 466, 766
CviQI	GTAC	1 cut(s)	325
DdeI	CTNAG	3 cut(s)	344, 509, 866
DpnI	GATC	1 cut(s)	504
DpnII	GATC	1 cut(s)	502
EaeI	YGGCCR	1 cut(s)	261
Ecl136II	GAGCTC	1 cut(s)	412
Eco130I	CCWWGG	1 cut(s)	874
Eco24I	GRGCYC	2 cut(s)	414, 639
Eco47I	GGWCC	1 cut(s)	439
Eco53kI	GAGCTC	1 cut(s)	412
Eco57I	CTGAAG	1 cut(s)	433
Eco72I	CACGTG	1 cut(s)	354
Eco88I	CYCGRG	2 cut(s)	254, 405
EcoICRI	GAGCTC	1 cut(s)	412
EcoO109I	RGGNCCY	2 cut(s)	250, 439
EcoRI	GAATTC	1 cut(s)	239
EcoRII	CCWGG	1 cut(s)	234
EcoT14I	CCWWGG	1 cut(s)	874
EcoT38I	GRGCYC	2 cut(s)	414, 639
ErhI	CCWWGG	1 cut(s)	874
FaeI	CATG	4 cut(s)	337, 385, 469, 769
FaiI	YATR	7 cut(s)	23, 335, 383, 467, 600, 767, 828
FalI	AAGNNNNNCTT	2 cut(s)	834, 866
FaqI	GGGAC	2 cut(s)	425, 530
FatI	CATG	4 cut(s)	333, 381, 465, 765
FblI	GTMKAC	1 cut(s)	339
Fnu4HI	GCNGC	4 cut(s)	294, 349, 560, 745
FokI	GGATG	3 cut(s)	218, 709, 733
FriOI	GRGCYC	2 cut(s)	414, 639
Fsp4HI	GCNGC	4 cut(s)	294, 349, 560, 745
FspBI	CTAG	1 cut(s)	895
GlaI	GCGC	1 cut(s)	307
GluI	GCNGC	4 cut(s)	294, 349, 560, 745
HaeII	RGCGCY	1 cut(s)	309
HaeIII	GGCC	3 cut(s)	251, 263, 652
HapII	CCGG	1 cut(s)	183
HhaI	GCGC	1 cut(s)	308
Hin1II	CATG	4 cut(s)	337, 385, 469, 769
Hin6I	GCGC	1 cut(s)	306
HinP1I	GCGC	1 cut(s)	306
HincII	GTYRAC	1 cut(s)	340
HindII	GTYRAC	1 cut(s)	340
HindIII	AAGCTT	1 cut(s)	104
HinfI	GANTC	3 cut(s)	392, 475, 879
HpaII	CCGG	1 cut(s)	183
HphI	GGTGA	6 cut(s)	109, 151, 398, 691, 821, 869
Hpy166II	GTNNAC	3 cut(s)	226, 340, 607
Hpy188I	TCNGA	4 cut(s)	397, 567, 672, 867
Hpy188III	TCNNGA	1 cut(s)	479
Hpy8I	GTNNAC	3 cut(s)	226, 340, 607
Hpy99I	CGWCG	3 cut(s)	287, 365, 676
HpyAV	CCTTC	1 cut(s)	562
HpyCH4III	ACNGT	2 cut(s)	676, 706
HpyCH4IV	ACGT	5 cut(s)	353, 363, 519, 576, 630
HpyCH4V	TGCA	4 cut(s)	226, 417, 562, 751
HpyF10VI	GCNNNNNNNGC	4 cut(s)	312, 622, 649, 691
HpyF3I	CTNAG	3 cut(s)	344, 509, 866
HpySE526I	ACGT	5 cut(s)	353, 363, 519, 576, 630
Hsp92II	CATG	4 cut(s)	337, 385, 469, 769
HspAI	GCGC	1 cut(s)	306
KroI	GCCGGC	1 cut(s)	182
KroNI	GCCGGC	1 cut(s)	184
KspI	CCGCGG	1 cut(s)	549
Kzo9I	GATC	1 cut(s)	502
LmnI	GCTCC	1 cut(s)	595
LpnPI	CCDG	8 cut(s)	196, 221, 248, 310, 323, 403, 761, 822
Lsp1109I	GCAGC	2 cut(s)	546, 731
LweI	GCATC	2 cut(s)	240, 571
MaeI	CTAG	1 cut(s)	895
MaeII	ACGT	5 cut(s)	353, 363, 519, 576, 630
MaeIII	GTNAC	5 cut(s)	97, 203, 356, 386, 886
MalI	GATC	1 cut(s)	504
MboI	GATC	1 cut(s)	502
MboII	GAAGA	3 cut(s)	410, 484, 834
MhlI	GDGCHC	3 cut(s)	228, 414, 639
MlsI	TGGCCA	1 cut(s)	263
MluCI	AATT	6 cut(s)	16, 47, 146, 239, 813, 861
MluNI	TGGCCA	1 cut(s)	263
MlyI	GAGTC	2 cut(s)	401, 888
MmeI	TCCRAC	2 cut(s)	375, 695
Mox20I	TGGCCA	1 cut(s)	263
MroNI	GCCGGC	1 cut(s)	182
MscI	TGGCCA	1 cut(s)	263
MseI	TTAA	2 cut(s)	89, 108
MslI	CAYNNNNRTG	2 cut(s)	707, 770
Msp20I	TGGCCA	1 cut(s)	263
MspA1I	CMGCKG	4 cut(s)	508, 548, 559, 744
MspI	CCGG	1 cut(s)	183
MspR9I	CCNGG	1 cut(s)	236
MvaI	CCWGG	1 cut(s)	236
MvnI	CGCG	2 cut(s)	548, 885
MwoI	GCNNNNNNNGC	4 cut(s)	312, 622, 649, 691
NaeI	GCCGGC	1 cut(s)	184
NdeII	GATC	1 cut(s)	502
NgoMIV	GCCGGC	1 cut(s)	182
NlaIII	CATG	4 cut(s)	337, 385, 469, 769
NlaIV	GGNNCC	2 cut(s)	441, 783
NmuCI	GTSAC	4 cut(s)	97, 203, 386, 886
OliI	CACNNNNGTG	1 cut(s)	707
PaeR7I	CTCGAG	1 cut(s)	254
PcsI	WCGNNNNNNNCGW	1 cut(s)	282
PdiI	GCCGGC	1 cut(s)	184
PfeI	GAWTC	1 cut(s)	475
PflFI	GACNNNGTC	1 cut(s)	437
PfoI	TCCNGGA	1 cut(s)	234
PkrI	GCNGC	4 cut(s)	295, 350, 561, 746
PleI	GAGTC	2 cut(s)	400, 887
PmaCI	CACGTG	1 cut(s)	354
PmlI	CACGTG	1 cut(s)	354
PpsI	GAGTC	2 cut(s)	400, 887
Ppu21I	YACGTR	1 cut(s)	354
PpuMI	RGGWCCY	1 cut(s)	439
Psp124BI	GAGCTC	1 cut(s)	414
Psp5II	RGGWCCY	1 cut(s)	439
Psp6I	CCWGG	1 cut(s)	234
PspCI	CACGTG	1 cut(s)	354
PspGI	CCWGG	1 cut(s)	234
PspN4I	GGNNCC	2 cut(s)	441, 783
PspPI	GGNCC	3 cut(s)	250, 439, 650
PspPPI	RGGWCCY	1 cut(s)	439
PspXI	VCTCGAGB	1 cut(s)	254
PstI	CTGCAG	2 cut(s)	419, 753
PsyI	GACNNNGTC	1 cut(s)	437
PvuII	CAGCTG	3 cut(s)	508, 559, 744
RsaI	GTAC	1 cut(s)	326
RsaNI	GTAC	1 cut(s)	325
RseI	CAYNNNNRTG	2 cut(s)	707, 770
SacI	GAGCTC	1 cut(s)	414
SacII	CCGCGG	1 cut(s)	549
SalI	GTCGAC	1 cut(s)	338
SaqAI	TTAA	2 cut(s)	89, 108
SatI	GCNGC	4 cut(s)	294, 349, 560, 745
Sau3AI	GATC	1 cut(s)	502
Sau96I	GGNCC	3 cut(s)	250, 439, 650
SchI	GAGTC	2 cut(s)	401, 888
ScrFI	CCNGG	1 cut(s)	236
SduI	GDGCHC	3 cut(s)	228, 414, 639
SfaNI	GCATC	2 cut(s)	240, 571
SfcI	CTRYAG	2 cut(s)	415, 749
Sfr274I	CTCGAG	1 cut(s)	254
Sfr303I	CCGCGG	1 cut(s)	549
SgrBI	CCGCGG	1 cut(s)	549
SinI	GGWCC	1 cut(s)	439
SlaI	CTCGAG	1 cut(s)	254
SmiMI	CAYNNNNRTG	2 cut(s)	707, 770
SmlI	CTYRAG	3 cut(s)	254, 638, 758
SmoI	CTYRAG	3 cut(s)	254, 638, 758
Sse9I	AATT	6 cut(s)	16, 47, 146, 239, 813, 861
SsiI	CCGC	9 cut(s)	151, 180, 294, 349, 546, 548, 694, 819, 883
SspMI	CTAG	1 cut(s)	895
SstI	GAGCTC	1 cut(s)	414
StyD4I	CCNGG	1 cut(s)	234
StyI	CCWWGG	1 cut(s)	874
TaaI	ACNGT	2 cut(s)	676, 706
TaiI	ACGT	5 cut(s)	356, 366, 522, 579, 633
TaqI	TCGA	6 cut(s)	243, 255, 285, 339, 432, 689
TasI	AATT	6 cut(s)	16, 47, 146, 239, 813, 861
TauI	GCSGC	2 cut(s)	296, 351
TfiI	GAWTC	1 cut(s)	475
Tru1I	TTAA	2 cut(s)	89, 108
Tru9I	TTAA	2 cut(s)	89, 108
TseFI	GTSAC	4 cut(s)	97, 203, 386, 886
TseI	GCWGC	2 cut(s)	559, 744
Tsp45I	GTSAC	4 cut(s)	97, 203, 386, 886
TspDTI	ATGAA	4 cut(s)	10, 322, 737, 787
TspGWI	ACGGA	1 cut(s)	504
Tth111I	GACNNNGTC	1 cut(s)	437
VneI	GTGCAC	1 cut(s)	224
VpaK11BI	GGWCC	1 cut(s)	439
XapI	RAATTY	4 cut(s)	16, 239, 813, 861
XhoI	CTCGAG	1 cut(s)	254
XmiI	GTMKAC	1 cut(s)	339
XspI	CTAG	1 cut(s)	895

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.