Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0015274

Physical Location & Seq

Genomic Coordinates Forward (+)

27524489 .. 27525919

Gene Structure 1431 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g37930.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 906 bp

ATGGCGACCATCACAAATTTCGTAGCCAAACCACCTCTATCTCTATCTGATTCAACCCCAAAAACCAGCTCTCTTTACCGCCACCACCGTTCCTTCTCATCCTTGGTCACCAAACTCAGACCTCTAGCAACAAAGCTAGAAGCCAAACAAGCCCGCTTCAACCTGACCACAAAGGCCACGGCCGCCCCGAAAACTAAGAAAGTACAAAGCGATGAAAGAGTAGTACGAGTCCACAGCATATCGGAATTCGATGAAGCGCTTCAGTCGGCAAAGAACAAGCTCGTGGTGGTCGAATTCGCCGCCAGCCACAGCGCCAATAGCAAGAAAATGTACCCCTTTATGGTTGATCTCAGCCGCACGTGCGCCGACGTGGAGTTCCTGTTGGTGATGGGAGACGAAAACGAGAAGACGAGGGAGTTATGCAGGAGAGAGAAGATCGAGAAGGTTCCGCACTTCAGCTTTTACAAGAGCACGGTGAAGATTCACGAGGAGGAAGGCATCGACGGGGACCGGCTCGTCGGAGACGTGTTGTATTACGGGGACAACCACTCGGCGGTGGTGCAGCTGCATAACAGGGAAGACGTTGAGAAGTTGATTCAAGAACACAAGGAGGATCATAAGCTCATTGTGCTTGACGTGGGGCTTAAGCATTGCGGGCCGTGCGTGAAGGTGTATCCGACGGTGGTGAAGCTGTCGAGGAAGATGGAGGACACCGTGGTGTTTGCGAGAATGAACGGAGACGAGAACGAGAGCTGTATGCAGTTTCTGAAAGACATGGAGGTGGTGGAGGTGCCGACGTTCTTGTTCATTAGGGATGGTGAGATTTGCGGAAGGTATGTGGGTTCTGGAAAGGGTGAGCTTATTGGTGAGATTCTGAGATACCAAGGAGTGCGTGTCACTTACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004791 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006950 GO:0006979 GO:0008150 GO:0008152 GO:0009414 GO:0009415 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009570 GO:0009628 GO:0009636 GO:0009941 GO:0009987 GO:0010035 GO:0015035 GO:0015036 GO:0016209 GO:0016491 GO:0016651 GO:0016667 GO:0016668 GO:0016671 GO:0019725 GO:0031967 GO:0031975 GO:0033554 GO:0034599 GO:0042221 GO:0042592 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0045454 GO:0047134 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0055114 GO:0065007 GO:0065008 GO:0070887 GO:0097237 GO:0098754 GO:0098869 GO:1901700 GO:1990748

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Thioredoxin

Protein Analysis

302

Amino Acids

34.14

Weight (kDa)

8.12

Isoelectric Point (pI)

34.96

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Thioredoxin	PF00085	76 - 167	6.2e-09	Thioredoxin
Thioredoxin	PF00085	195 - 286	5e-12	Thioredoxin

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015274)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G76080
fragaria_vesca	FvH4_2g37930
malus_domestica	MD08G1007500.v1.1 MD15G1006700.v1.1
prunus_persica	Prupe.1G359300_v2.0.a1
pyrus_communis	pycom08g00610 pycom15g00530
rosa_chinensis	RchiOBHm_Chr6g0303681
rosa_laevigata	RLG00000011057
rosa_roxburghii	Rroxscaffold_7G00164490
rosa_rugosa	Rorug06G0323900
rosa_samantha	Rh6AG438200 Rh6BG464900 Rh6CG450500 Rh6DG437100
rosa_wichuraiana	Rw6G037920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	515
AccB1I	GGYRCC	1 cut(s)	790
AciI	CCGC	9 cut(s)	79, 154, 183, 300, 355, 449, 554, 654, 828
AclWI	GGATC	1 cut(s)	621
AcoI	YGGCCR	1 cut(s)	180
AcsI	RAATTY	3 cut(s)	16, 245, 293
AcuI	CTGAAG	2 cut(s)	245, 439
AcvI	CACGTG	1 cut(s)	360
AfaI	GTAC	3 cut(s)	204, 225, 332
AfeI	AGCGCT	1 cut(s)	258
AfiI	CCNNNNNNNGG	2 cut(s)	340, 553
AflII	CTTAAG	1 cut(s)	644
AflIII	ACRYGT	1 cut(s)	525
AgsI	TTSAA	3 cut(s)	54, 160, 599
AjiI	CACGTC	3 cut(s)	370, 526, 637
AleI	CACNNNNGTG	1 cut(s)	716
AluBI	AGCT	9 cut(s)	69, 136, 280, 459, 565, 622, 691, 753, 859
AluI	AGCT	9 cut(s)	69, 136, 280, 459, 565, 622, 691, 753, 859
Alw21I	GWGCWC	1 cut(s)	473
Alw26I	GTCTC	3 cut(s)	387, 516, 732
AlwI	GGATC	1 cut(s)	621
AlwNI	CAGNNNCTG	1 cut(s)	766
Aor51HI	AGCGCT	1 cut(s)	258
AoxI	GGCC	3 cut(s)	174, 180, 656
ApeKI	GCWGC	2 cut(s)	562, 565
ApoI	RAATTY	3 cut(s)	16, 245, 293
Asp700I	GAANNNNTTC	1 cut(s)	258
AspLEI	GCGC	3 cut(s)	259, 314, 365
AspS9I	GGNCC	2 cut(s)	508, 656
AsuHPI	GGTGA	7 cut(s)	100, 397, 487, 697, 830, 866, 878
AvaII	GGWCC	1 cut(s)	508
BanI	GGYRCC	1 cut(s)	790
BauI	CACGAG	2 cut(s)	281, 485
BbrPI	CACGTG	1 cut(s)	360
BbsI	GAAGAC	2 cut(s)	413, 585
Bbv12I	GWGCWC	1 cut(s)	473
BbvI	GCAGC	2 cut(s)	552, 574
BccI	CCATC	4 cut(s)	17, 382, 697, 809
BceAI	ACGGC	2 cut(s)	195, 643
BciVI	GTATCC	1 cut(s)	684
BcoDI	GTCTC	3 cut(s)	387, 516, 732
BfaI	CTAG	2 cut(s)	125, 137
BfoI	RGCGCY	2 cut(s)	260, 315
BfrI	CTTAAG	1 cut(s)	644
BfuI	GTATCC	1 cut(s)	684
BisI	GCNGC	5 cut(s)	183, 300, 355, 563, 566
BlsI	GCNGC	5 cut(s)	184, 301, 356, 564, 567
Bme18I	GGWCC	1 cut(s)	508
BmgBI	CACGTC	3 cut(s)	370, 526, 637
BmgT120I	GGNCC	2 cut(s)	508, 656
BmiI	GGNNCC	3 cut(s)	447, 509, 792
BmsI	GCATC	1 cut(s)	507
BpiI	GAAGAC	2 cut(s)	413, 585
BsaAI	YACGTR	1 cut(s)	360
BsaJI	CCNNGG	4 cut(s)	102, 177, 714, 883
BsaXI	ACNNNNNCTCC	3 cut(s)	365, 395, 879
Bsc4I	CCNNNNNNNGG	2 cut(s)	340, 553
Bse118I	RCCGGY	1 cut(s)	510
Bse3DI	GCAATG	1 cut(s)	649
BseDI	CCNNGG	4 cut(s)	102, 177, 714, 883
BseGI	GGATG	2 cut(s)	98, 820
BseLI	CCNNNNNNNGG	2 cut(s)	340, 553
BseMI	GCAATG	1 cut(s)	649
BseMII	CTCAG	3 cut(s)	130, 364, 866
BseRI	GAGGAG	1 cut(s)	503
BseX3I	CGGCCG	1 cut(s)	180
BseXI	GCAGC	2 cut(s)	552, 574
BsgI	GTGCAG	1 cut(s)	581
Bsh1285I	CGRYCG	1 cut(s)	183
BshFI	GGCC	3 cut(s)	176, 182, 658
BshNI	GGYRCC	1 cut(s)	790
BsiEI	CGRYCG	1 cut(s)	183
BsiHKAI	GWGCWC	1 cut(s)	473
BsiSI	CCGG	1 cut(s)	511
BslFI	GGGAC	2 cut(s)	521, 554
BslI	CCNNNNNNNGG	2 cut(s)	340, 553
BsmAI	GTCTC	3 cut(s)	387, 516, 732
BsmBI	CGTCTC	3 cut(s)	387, 516, 732
BsmFI	GGGAC	2 cut(s)	521, 554
BsnI	GGCC	3 cut(s)	176, 182, 658
Bsp1286I	GDGCHC	1 cut(s)	473
Bsp143I	GATC	3 cut(s)	346, 435, 613
BspACI	CCGC	9 cut(s)	79, 154, 183, 300, 355, 449, 554, 654, 828
BspANI	GGCC	3 cut(s)	176, 182, 658
BspCNI	CTCAG	3 cut(s)	129, 363, 867
BspLI	GGNNCC	3 cut(s)	447, 509, 792
BspPI	GGATC	1 cut(s)	621
BspT107I	GGYRCC	1 cut(s)	790
BspTI	CTTAAG	1 cut(s)	644
BsrDI	GCAATG	1 cut(s)	649
BsrFI	RCCGGY	1 cut(s)	510
BssAI	RCCGGY	1 cut(s)	510
BssECI	CCNNGG	4 cut(s)	102, 177, 714, 883
BssMI	GATC	3 cut(s)	346, 435, 613
BssSI	CACGAG	2 cut(s)	281, 485
BssT1I	CCWWGG	2 cut(s)	102, 883
Bst2BI	CACGAG	2 cut(s)	281, 485
Bst4CI	ACNGT	4 cut(s)	89, 475, 682, 715
BstAFI	CTTAAG	1 cut(s)	644
BstBAI	YACGTR	1 cut(s)	360
BstC8I	GCNNGC	3 cut(s)	154, 304, 656
BstDEI	CTNAG	4 cut(s)	116, 195, 350, 875
BstDSI	CCRYGG	2 cut(s)	177, 714
BstEII	GGTNACC	1 cut(s)	106
BstF5I	GGATG	2 cut(s)	98, 820
BstH2I	RGCGCY	2 cut(s)	260, 315
BstHHI	GCGC	3 cut(s)	259, 314, 365
BstKTI	GATC	3 cut(s)	349, 438, 616
BstMAI	GTCTC	3 cut(s)	387, 516, 732
BstMBI	GATC	3 cut(s)	346, 435, 613
BstMCI	CGRYCG	1 cut(s)	183
BstMWI	GCNNNNNNNGC	7 cut(s)	149, 182, 318, 360, 628, 655, 660
BstPI	GGTNACC	1 cut(s)	106
BstV1I	GCAGC	2 cut(s)	552, 574
BstV2I	GAAGAC	2 cut(s)	413, 585
BstZI	CGGCCG	1 cut(s)	180
BsuI	GTATCC	1 cut(s)	684
BsuRI	GGCC	3 cut(s)	176, 182, 658
BtgI	CCRYGG	2 cut(s)	177, 714
BtgZI	GCGATG	1 cut(s)	225
BtrI	CACGTC	3 cut(s)	370, 526, 637
BtsCI	GGATG	2 cut(s)	98, 820
Cac8I	GCNNGC	3 cut(s)	154, 304, 656
CaiI	CAGNNNCTG	1 cut(s)	766
CfoI	GCGC	3 cut(s)	259, 314, 365
Cfr10I	RCCGGY	1 cut(s)	510
Cfr13I	GGNCC	2 cut(s)	508, 656
Csp6I	GTAC	3 cut(s)	203, 224, 331
CviAII	CATG	1 cut(s)	775
CviQI	GTAC	3 cut(s)	203, 224, 331
DdeI	CTNAG	4 cut(s)	116, 195, 350, 875
DpnI	GATC	3 cut(s)	348, 437, 615
DpnII	GATC	3 cut(s)	346, 435, 613
DrdI	GACNNNNNNGTC	1 cut(s)	515
DseDI	GACNNNNNNGTC	1 cut(s)	515
EaeI	YGGCCR	1 cut(s)	180
EagI	CGGCCG	1 cut(s)	180
EclXI	CGGCCG	1 cut(s)	180
Eco130I	CCWWGG	2 cut(s)	102, 883
Eco47I	GGWCC	1 cut(s)	508
Eco47III	AGCGCT	1 cut(s)	258
Eco52I	CGGCCG	1 cut(s)	180
Eco57I	CTGAAG	2 cut(s)	245, 439
Eco72I	CACGTG	1 cut(s)	360
Eco91I	GGTNACC	1 cut(s)	106
EcoO65I	GGTNACC	1 cut(s)	106
EcoRI	GAATTC	2 cut(s)	245, 293
EcoT14I	CCWWGG	2 cut(s)	102, 883
ErhI	CCWWGG	2 cut(s)	102, 883
Esp3I	CGTCTC	3 cut(s)	387, 516, 732
FaeI	CATG	1 cut(s)	778
FaiI	YATR	8 cut(s)	239, 341, 421, 570, 618, 758, 776, 837
FaqI	GGGAC	2 cut(s)	521, 554
FatI	CATG	1 cut(s)	774
FauI	CCCGC	2 cut(s)	161, 647
Fnu4HI	GCNGC	5 cut(s)	183, 300, 355, 563, 566
FokI	GGATG	2 cut(s)	85, 827
Fsp4HI	GCNGC	5 cut(s)	183, 300, 355, 563, 566
FspBI	CTAG	2 cut(s)	125, 137
GlaI	GCGC	3 cut(s)	258, 313, 364
GluI	GCNGC	5 cut(s)	183, 300, 355, 563, 566
HaeII	RGCGCY	2 cut(s)	260, 315
HaeIII	GGCC	3 cut(s)	176, 182, 658
HapII	CCGG	1 cut(s)	511
HhaI	GCGC	3 cut(s)	259, 314, 365
Hin1II	CATG	1 cut(s)	778
Hin6I	GCGC	3 cut(s)	257, 312, 363
HinP1I	GCGC	3 cut(s)	257, 312, 363
HinfI	GANTC	5 cut(s)	50, 228, 481, 595, 871
HpaII	CCGG	1 cut(s)	511
HphI	GGTGA	7 cut(s)	100, 397, 487, 697, 830, 866, 878
Hpy166II	GTNNAC	1 cut(s)	232
Hpy188I	TCNGA	7 cut(s)	49, 119, 244, 521, 678, 768, 876
Hpy188III	TCNNGA	4 cut(s)	439, 485, 599, 846
Hpy8I	GTNNAC	1 cut(s)	232
Hpy99I	CGWCG	5 cut(s)	371, 506, 521, 682, 799
HpyAV	CCTTC	5 cut(s)	103, 436, 488, 661, 825
HpyCH4III	ACNGT	4 cut(s)	89, 475, 682, 715
HpyCH4IV	ACGT	6 cut(s)	359, 369, 525, 582, 636, 797
HpyCH4V	TGCA	4 cut(s)	423, 562, 568, 760
HpyF10VI	GCNNNNNNNGC	7 cut(s)	149, 182, 318, 360, 628, 655, 660
HpyF3I	CTNAG	4 cut(s)	116, 195, 350, 875
HpySE526I	ACGT	6 cut(s)	359, 369, 525, 582, 636, 797
Hsp92II	CATG	1 cut(s)	778
HspAI	GCGC	3 cut(s)	257, 312, 363
Kzo9I	GATC	3 cut(s)	346, 435, 613
LpnPI	CCDG	8 cut(s)	79, 176, 316, 392, 409, 524, 559, 831
Lsp1109I	GCAGC	2 cut(s)	552, 574
LweI	GCATC	1 cut(s)	507
MaeI	CTAG	2 cut(s)	125, 137
MaeII	ACGT	6 cut(s)	359, 369, 525, 582, 636, 797
MaeIII	GTNAC	2 cut(s)	106, 895
MalI	GATC	3 cut(s)	348, 437, 615
MboI	GATC	3 cut(s)	346, 435, 613
MboII	GAAGA	5 cut(s)	418, 445, 490, 590, 712
MhlI	GDGCHC	1 cut(s)	473
MluCI	AATT	3 cut(s)	16, 245, 293
MlyI	GAGTC	1 cut(s)	237
MmeI	TCCRAC	2 cut(s)	499, 701
MroXI	GAANNNNTTC	1 cut(s)	258
MseI	TTAA	1 cut(s)	645
MslI	CAYNNNNRTG	2 cut(s)	716, 779
MspA1I	CMGCKG	1 cut(s)	565
MspCI	CTTAAG	1 cut(s)	644
MspI	CCGG	1 cut(s)	511
MwoI	GCNNNNNNNGC	7 cut(s)	149, 182, 318, 360, 628, 655, 660
NdeII	GATC	3 cut(s)	346, 435, 613
NlaIII	CATG	1 cut(s)	778
NlaIV	GGNNCC	3 cut(s)	447, 509, 792
NmeAIII	GCCGAG	1 cut(s)	530
NmuCI	GTSAC	2 cut(s)	106, 895
OliI	CACNNNNGTG	1 cut(s)	716
PcsI	WCGNNNNNNNCGW	3 cut(s)	185, 288, 522
PdmI	GAANNNNTTC	1 cut(s)	258
PfeI	GAWTC	4 cut(s)	50, 481, 595, 871
PkrI	GCNGC	5 cut(s)	184, 301, 356, 564, 567
PleI	GAGTC	1 cut(s)	236
PmaCI	CACGTG	1 cut(s)	360
PmlI	CACGTG	1 cut(s)	360
PpsI	GAGTC	1 cut(s)	236
Ppu21I	YACGTR	1 cut(s)	360
PspCI	CACGTG	1 cut(s)	360
PspEI	GGTNACC	1 cut(s)	106
PspN4I	GGNNCC	3 cut(s)	447, 509, 792
PspPI	GGNCC	2 cut(s)	508, 656
PstNI	CAGNNNCTG	1 cut(s)	766
PvuII	CAGCTG	1 cut(s)	565
RsaI	GTAC	3 cut(s)	204, 225, 332
RsaNI	GTAC	3 cut(s)	203, 224, 331
RseI	CAYNNNNRTG	2 cut(s)	716, 779
SaqAI	TTAA	1 cut(s)	645
SatI	GCNGC	5 cut(s)	183, 300, 355, 563, 566
Sau3AI	GATC	3 cut(s)	346, 435, 613
Sau96I	GGNCC	2 cut(s)	508, 656
SchI	GAGTC	1 cut(s)	237
SduI	GDGCHC	1 cut(s)	473
SfaNI	GCATC	1 cut(s)	507
SinI	GGWCC	1 cut(s)	508
SmiMI	CAYNNNNRTG	2 cut(s)	716, 779
SmlI	CTYRAG	1 cut(s)	644
SmoI	CTYRAG	1 cut(s)	644
Sse9I	AATT	3 cut(s)	16, 245, 293
SsiI	CCGC	9 cut(s)	79, 154, 183, 300, 355, 449, 554, 654, 828
SspMI	CTAG	2 cut(s)	125, 137
StyI	CCWWGG	2 cut(s)	102, 883
TaaI	ACNGT	4 cut(s)	89, 475, 682, 715
TaiI	ACGT	6 cut(s)	362, 372, 528, 585, 639, 800
TaqI	TCGA	5 cut(s)	249, 291, 438, 501, 695
TasI	AATT	3 cut(s)	16, 245, 293
TatI	WGTACW	1 cut(s)	202
TauI	GCSGC	3 cut(s)	185, 302, 357
TfiI	GAWTC	4 cut(s)	50, 481, 595, 871
Tru1I	TTAA	1 cut(s)	645
Tru9I	TTAA	1 cut(s)	645
TseFI	GTSAC	2 cut(s)	106, 895
TseI	GCWGC	2 cut(s)	562, 565
Tsp45I	GTSAC	2 cut(s)	106, 895
TspDTI	ATGAA	4 cut(s)	228, 267, 746, 796
TspGWI	ACGGA	1 cut(s)	750
Vha464I	CTTAAG	1 cut(s)	644
VpaK11BI	GGWCC	1 cut(s)	508
XapI	RAATTY	3 cut(s)	16, 245, 293
XmnI	GAANNNNTTC	1 cut(s)	258
XspI	CTAG	2 cut(s)	125, 137

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.