Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6A

Orthogroup ID

OG0015274

Physical Location & Seq

Genomic Coordinates Reverse (-)

62691539 .. 62692613

Gene Structure 1075 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6AG438200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 900 bp

ATGGCGACCATCACAAATTTCGTAGCCAAACCACCTTTATCTCTATCTTCAATCCCCAAAGCCAGCTCTCTTTACCACCACCGGTCCTTCTTATCCTTAGTCACCAAACTCAAACCTCTAGCAACCAAACTAGAAGCCAAACAAGCCCGCTTCAACTTCACCACAAAGGCCACGGCCGCCCCGGGCACTAAGAAAGTGGGGAGCGATGAGAGAGTAGTACGAGTCCACAGCATAGCGGAATTCGATGGAGTGCTTCAATCGGCAAAGAACAAGCTCGTGGTGGTCGAATTCGCCGCCAGCCACAGCTCCGAGAGCAAGAAAATGTACCCCTTCATGGTTGATCTCAGCCGCACGTGTGGCGACGTGGAGTTCTTACTGGTGATGGGAGACGAAAACGAGAAGACCAGGGAGCTATGCAGGAGAGAAAAAATCGAGAAGTTTCCGCACTTCAGCTTCTACAAGAGCATGGAGAAGATTCACGAGGAGGAAGGCATAGACGGCAACCAGCTTGTCGGAGATGTGTTATATTACGGCGACAACCATTCGGCGGTGGTGCAGTTACATAACCGAGAGGACGTTGAGAAGTTGATTCAAGATCACAAGGTTGACCATAAGCTGATTGTGCTTGACGTGGGGCTCAAGCATTGTGGGCCGTGCGTGAAGGTGTATCCGACGGTGGTTAAGCTGTCGAAGAGGATGGAGGATACGGTGGTGTTTGCGAGGATGAACGGTGATGAGAACGACAGCTGTCTGCAGTTCCTCAAGGACATGGAGGTGGTGGAGGTGCCGACGTTCTTGTTCATCAGGGATGGTGAGATTTGCGGAAGGTACGTGGGCTCTGGGAAGGGTGAGCTCATTGGTGAGATTCTGAGATACCAAGGAGTACGTGTCACTTACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004791 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006950 GO:0006979 GO:0008150 GO:0008152 GO:0009414 GO:0009415 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009570 GO:0009628 GO:0009636 GO:0009941 GO:0009987 GO:0010035 GO:0015035 GO:0015036 GO:0016209 GO:0016491 GO:0016651 GO:0016667 GO:0016668 GO:0016671 GO:0019725 GO:0031967 GO:0031975 GO:0033554 GO:0034599 GO:0042221 GO:0042592 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0045454 GO:0047134 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0055114 GO:0065007 GO:0065008 GO:0070887 GO:0097237 GO:0098754 GO:0098869 GO:1901700 GO:1990748

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Thioredoxin

Protein Analysis

299

Amino Acids

33.7

Weight (kDa)

7.66

Isoelectric Point (pI)

31.1

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Thioredoxin	PF00085	74 - 166	3.8e-08	Thioredoxin
Thioredoxin	PF00085	190 - 284	9e-12	Thioredoxin

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015274)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G76080
fragaria_vesca	FvH4_2g37930
malus_domestica	MD08G1007500.v1.1 MD15G1006700.v1.1
prunus_persica	Prupe.1G359300_v2.0.a1
pyrus_communis	pycom08g00610 pycom15g00530
rosa_chinensis	RchiOBHm_Chr6g0303681
rosa_laevigata	RLG00000011057
rosa_roxburghii	Rroxscaffold_7G00164490
rosa_rugosa	Rorug06G0323900
rosa_samantha	Rh6AG438200 Rh6BG464900 Rh6CG450500 Rh6DG437100
rosa_wichuraiana	Rw6G037920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	784
AciI	CCGC	8 cut(s)	148, 177, 236, 294, 349, 443, 548, 822
AcoI	YGGCCR	1 cut(s)	174
AcsI	RAATTY	3 cut(s)	16, 239, 287
AcuI	CTGAAG	1 cut(s)	433
AcvI	CACGTG	1 cut(s)	354
AfaI	GTAC	4 cut(s)	219, 326, 830, 885
AfiI	CCNNNNNNNGG	2 cut(s)	334, 547
AflIII	ACRYGT	2 cut(s)	353, 886
AgeI	ACCGGT	1 cut(s)	81
AgsI	TTSAA	4 cut(s)	51, 154, 257, 593
AjiI	CACGTC	2 cut(s)	364, 631
AjnI	CCWGG	1 cut(s)	404
Alw21I	GWGCWC	1 cut(s)	855
Alw26I	GTCTC	1 cut(s)	381
Ama87I	CYCGRG	1 cut(s)	181
AoxI	GGCC	3 cut(s)	168, 174, 650
ApoI	RAATTY	3 cut(s)	16, 239, 287
AsiGI	ACCGGT	1 cut(s)	81
AspS9I	GGNCC	2 cut(s)	84, 650
AsuC2I	CCSGG	2 cut(s)	182, 183
AsuHPI	GGTGA	7 cut(s)	94, 151, 391, 743, 824, 860, 872
AvaI	CYCGRG	1 cut(s)	181
AvaII	GGWCC	1 cut(s)	84
BaeGI	GKGCMC	1 cut(s)	188
BaeI	ACNNNNGTAYC	2 cut(s)	696, 729
BanI	GGYRCC	1 cut(s)	784
BanII	GRGCYC	3 cut(s)	639, 839, 855
BauI	CACGAG	2 cut(s)	275, 479
BbrPI	CACGTG	1 cut(s)	354
BbsI	GAAGAC	1 cut(s)	407
Bbv12I	GWGCWC	1 cut(s)	855
BccI	CCATC	5 cut(s)	17, 239, 376, 691, 803
BceAI	ACGGC	4 cut(s)	189, 514, 547, 637
BciT130I	CCWGG	1 cut(s)	406
BciVI	GTATCC	2 cut(s)	678, 697
BcnI	CCSGG	2 cut(s)	182, 183
BcoDI	GTCTC	1 cut(s)	381
BfaI	CTAG	2 cut(s)	119, 131
BfmI	CTRYAG	1 cut(s)	752
BfuI	GTATCC	2 cut(s)	678, 697
BisI	GCNGC	3 cut(s)	177, 294, 349
BlsI	GCNGC	3 cut(s)	178, 295, 350
Bme1390I	CCNGG	3 cut(s)	182, 183, 406
Bme18I	GGWCC	1 cut(s)	84
BmeT110I	CYCGRG	1 cut(s)	181
BmgBI	CACGTC	2 cut(s)	364, 631
BmgT120I	GGNCC	2 cut(s)	84, 650
BmiI	GGNNCC	1 cut(s)	786
BmrFI	CCNGG	3 cut(s)	182, 183, 406
BoxI	GACNNNNGTC	1 cut(s)	747
BpiI	GAAGAC	1 cut(s)	407
BpuEI	CTTGAG	2 cut(s)	623, 746
BpuMI	CCSGG	2 cut(s)	182, 183
BsaAI	YACGTR	3 cut(s)	354, 832, 887
BsaJI	CCNNGG	5 cut(s)	171, 180, 181, 405, 877
BsaWI	WCCGGW	1 cut(s)	81
BsaXI	ACNNNNNCTCC	1 cut(s)	873
Bsc4I	CCNNNNNNNGG	2 cut(s)	334, 547
Bse118I	RCCGGY	1 cut(s)	81
Bse1I	ACTGG	1 cut(s)	381
BseBI	CCWGG	1 cut(s)	406
BseDI	CCNNGG	5 cut(s)	171, 180, 181, 405, 877
BseGI	GGATG	3 cut(s)	702, 729, 814
BseLI	CCNNNNNNNGG	2 cut(s)	334, 547
BseMII	CTCAG	2 cut(s)	358, 860
BseNI	ACTGG	1 cut(s)	381
BseRI	GAGGAG	1 cut(s)	497
BseSI	GKGCMC	1 cut(s)	188
BseX3I	CGGCCG	1 cut(s)	174
BsgI	GTGCAG	1 cut(s)	575
Bsh1285I	CGRYCG	1 cut(s)	177
BshFI	GGCC	3 cut(s)	170, 176, 652
BshNI	GGYRCC	1 cut(s)	784
BshTI	ACCGGT	1 cut(s)	81
BsiEI	CGRYCG	1 cut(s)	177
BsiHKAI	GWGCWC	1 cut(s)	855
BsiHKCI	CYCGRG	1 cut(s)	181
BsiSI	CCGG	2 cut(s)	82, 182
BslI	CCNNNNNNNGG	2 cut(s)	334, 547
BsmAI	GTCTC	1 cut(s)	381
BsmBI	CGTCTC	1 cut(s)	381
BsnI	GGCC	3 cut(s)	170, 176, 652
BsoBI	CYCGRG	1 cut(s)	181
Bsp1286I	GDGCHC	4 cut(s)	188, 639, 839, 855
Bsp143I	GATC	2 cut(s)	340, 595
BspACI	CCGC	8 cut(s)	148, 177, 236, 294, 349, 443, 548, 822
BspANI	GGCC	3 cut(s)	170, 176, 652
BspCNI	CTCAG	2 cut(s)	357, 861
BspLI	GGNNCC	1 cut(s)	786
BspMAI	CTGCAG	1 cut(s)	756
BspT107I	GGYRCC	1 cut(s)	784
BsrFI	RCCGGY	1 cut(s)	81
BsrI	ACTGG	1 cut(s)	381
BssAI	RCCGGY	1 cut(s)	81
BssECI	CCNNGG	5 cut(s)	171, 180, 181, 405, 877
BssMI	GATC	2 cut(s)	340, 595
BssSI	CACGAG	2 cut(s)	275, 479
BssT1I	CCWWGG	1 cut(s)	877
Bst2BI	CACGAG	2 cut(s)	275, 479
Bst2UI	CCWGG	1 cut(s)	406
Bst4CI	ACNGT	3 cut(s)	676, 709, 731
Bst6I	CTCTTC	1 cut(s)	686
BstBAI	YACGTR	3 cut(s)	354, 832, 887
BstC8I	GCNNGC	3 cut(s)	64, 148, 298
BstDEI	CTNAG	4 cut(s)	97, 189, 344, 869
BstDSI	CCRYGG	1 cut(s)	171
BstF5I	GGATG	3 cut(s)	702, 729, 814
BstKTI	GATC	2 cut(s)	343, 598
BstMAI	GTCTC	1 cut(s)	381
BstMBI	GATC	2 cut(s)	340, 595
BstMCI	CGRYCG	1 cut(s)	177
BstMWI	GCNNNNNNNGC	7 cut(s)	143, 176, 312, 357, 498, 622, 649
BstNI	CCWGG	1 cut(s)	406
BstPAI	GACNNNNGTC	1 cut(s)	747
BstSCI	CCNGG	3 cut(s)	180, 181, 404
BstSFI	CTRYAG	1 cut(s)	752
BstSLI	GKGCMC	1 cut(s)	188
BstV2I	GAAGAC	1 cut(s)	407
BstZI	CGGCCG	1 cut(s)	174
BsuI	GTATCC	2 cut(s)	678, 697
BsuRI	GGCC	3 cut(s)	170, 176, 652
BtgI	CCRYGG	1 cut(s)	171
BtgZI	GCGATG	1 cut(s)	219
BtrI	CACGTC	2 cut(s)	364, 631
BtsCI	GGATG	3 cut(s)	702, 729, 814
Cac8I	GCNNGC	3 cut(s)	64, 148, 298
Cfr10I	RCCGGY	1 cut(s)	81
Cfr13I	GGNCC	2 cut(s)	84, 650
Cfr9I	CCCGGG	1 cut(s)	181
Csp6I	GTAC	4 cut(s)	218, 325, 829, 884
CspAI	ACCGGT	1 cut(s)	81
CspCI	CAANNNNNGTGG	2 cut(s)	628, 663
CviAII	CATG	3 cut(s)	334, 466, 769
CviQI	GTAC	4 cut(s)	218, 325, 829, 884
DdeI	CTNAG	4 cut(s)	97, 189, 344, 869
DpnI	GATC	2 cut(s)	342, 597
DpnII	GATC	2 cut(s)	340, 595
EaeI	YGGCCR	1 cut(s)	174
EagI	CGGCCG	1 cut(s)	174
Eam1104I	CTCTTC	1 cut(s)	686
EarI	CTCTTC	1 cut(s)	686
Ecl136II	GAGCTC	1 cut(s)	853
EclXI	CGGCCG	1 cut(s)	174
Eco130I	CCWWGG	1 cut(s)	877
Eco24I	GRGCYC	3 cut(s)	639, 839, 855
Eco47I	GGWCC	1 cut(s)	84
Eco52I	CGGCCG	1 cut(s)	174
Eco53kI	GAGCTC	1 cut(s)	853
Eco57I	CTGAAG	1 cut(s)	433
Eco72I	CACGTG	1 cut(s)	354
Eco88I	CYCGRG	1 cut(s)	181
EcoICRI	GAGCTC	1 cut(s)	853
EcoRI	GAATTC	2 cut(s)	239, 287
EcoRII	CCWGG	1 cut(s)	404
EcoT14I	CCWWGG	1 cut(s)	877
EcoT38I	GRGCYC	3 cut(s)	639, 839, 855
ErhI	CCWWGG	1 cut(s)	877
Esp3I	CGTCTC	1 cut(s)	381
FaeI	CATG	3 cut(s)	337, 469, 772
FaiI	YATR	9 cut(s)	233, 335, 415, 467, 494, 526, 564, 612, 770
FatI	CATG	3 cut(s)	333, 465, 768
FauI	CCCGC	1 cut(s)	155
Fnu4HI	GCNGC	3 cut(s)	177, 294, 349
FokI	GGATG	3 cut(s)	709, 736, 821
FriOI	GRGCYC	3 cut(s)	639, 839, 855
Fsp4HI	GCNGC	3 cut(s)	177, 294, 349
FspBI	CTAG	2 cut(s)	119, 131
GluI	GCNGC	3 cut(s)	177, 294, 349
HaeIII	GGCC	3 cut(s)	170, 176, 652
HapII	CCGG	2 cut(s)	82, 182
Hin1II	CATG	3 cut(s)	337, 469, 772
HincII	GTYRAC	1 cut(s)	607
HindII	GTYRAC	1 cut(s)	607
HinfI	GANTC	4 cut(s)	222, 475, 589, 865
HpaII	CCGG	2 cut(s)	82, 182
HphI	GGTGA	7 cut(s)	94, 151, 391, 743, 824, 860, 872
Hpy166II	GTNNAC	2 cut(s)	226, 607
Hpy188I	TCNGA	4 cut(s)	310, 515, 672, 870
Hpy188III	TCNNGA	3 cut(s)	433, 479, 593
Hpy8I	GTNNAC	2 cut(s)	226, 607
Hpy99I	CGWCG	3 cut(s)	365, 676, 793
HpyAV	CCTTC	6 cut(s)	97, 340, 482, 655, 819, 838
HpyCH4III	ACNGT	3 cut(s)	676, 709, 731
HpyCH4IV	ACGT	7 cut(s)	353, 363, 576, 630, 791, 831, 886
HpyCH4V	TGCA	3 cut(s)	417, 556, 754
HpyF10VI	GCNNNNNNNGC	7 cut(s)	143, 176, 312, 357, 498, 622, 649
HpyF3I	CTNAG	4 cut(s)	97, 189, 344, 869
HpySE526I	ACGT	7 cut(s)	353, 363, 576, 630, 791, 831, 886
Hsp92II	CATG	3 cut(s)	337, 469, 772
Kzo9I	GATC	2 cut(s)	340, 595
LmnI	GCTCC	3 cut(s)	201, 311, 409
MaeI	CTAG	2 cut(s)	119, 131
MaeII	ACGT	7 cut(s)	353, 363, 576, 630, 791, 831, 886
MaeIII	GTNAC	3 cut(s)	100, 558, 889
MalI	GATC	2 cut(s)	342, 597
MboI	GATC	2 cut(s)	340, 595
MboII	GAAGA	4 cut(s)	39, 412, 484, 703
MhlI	GDGCHC	4 cut(s)	188, 639, 839, 855
MluCI	AATT	3 cut(s)	16, 239, 287
MlyI	GAGTC	1 cut(s)	231
MmeI	TCCRAC	2 cut(s)	493, 695
MseI	TTAA	1 cut(s)	681
MslI	CAYNNNNRTG	1 cut(s)	773
MspA1I	CMGCKG	1 cut(s)	747
MspI	CCGG	2 cut(s)	82, 182
MspR9I	CCNGG	3 cut(s)	182, 183, 406
MvaI	CCWGG	1 cut(s)	406
MwoI	GCNNNNNNNGC	7 cut(s)	143, 176, 312, 357, 498, 622, 649
NciI	CCSGG	2 cut(s)	182, 183
NdeII	GATC	2 cut(s)	340, 595
NlaIII	CATG	3 cut(s)	337, 469, 772
NlaIV	GGNNCC	1 cut(s)	786
NmuCI	GTSAC	2 cut(s)	100, 889
PcsI	WCGNNNNNNNCGW	1 cut(s)	282
PfeI	GAWTC	3 cut(s)	475, 589, 865
PinAI	ACCGGT	1 cut(s)	81
PkrI	GCNGC	3 cut(s)	178, 295, 350
PleI	GAGTC	1 cut(s)	230
PmaCI	CACGTG	1 cut(s)	354
PmlI	CACGTG	1 cut(s)	354
PpsI	GAGTC	1 cut(s)	230
Ppu21I	YACGTR	3 cut(s)	354, 832, 887
PshAI	GACNNNNGTC	1 cut(s)	747
Psp124BI	GAGCTC	1 cut(s)	855
Psp6I	CCWGG	1 cut(s)	404
PspCI	CACGTG	1 cut(s)	354
PspGI	CCWGG	1 cut(s)	404
PspN4I	GGNNCC	1 cut(s)	786
PspPI	GGNCC	2 cut(s)	84, 650
PstI	CTGCAG	1 cut(s)	756
PvuII	CAGCTG	1 cut(s)	747
RsaI	GTAC	4 cut(s)	219, 326, 830, 885
RsaNI	GTAC	4 cut(s)	218, 325, 829, 884
RseI	CAYNNNNRTG	1 cut(s)	773
SacI	GAGCTC	1 cut(s)	855
SaqAI	TTAA	1 cut(s)	681
SatI	GCNGC	3 cut(s)	177, 294, 349
Sau3AI	GATC	2 cut(s)	340, 595
Sau96I	GGNCC	2 cut(s)	84, 650
SchI	GAGTC	1 cut(s)	231
ScrFI	CCNGG	3 cut(s)	182, 183, 406
SduI	GDGCHC	4 cut(s)	188, 639, 839, 855
SfcI	CTRYAG	1 cut(s)	752
SinI	GGWCC	1 cut(s)	84
SmaI	CCCGGG	1 cut(s)	183
SmiMI	CAYNNNNRTG	1 cut(s)	773
SmlI	CTYRAG	2 cut(s)	638, 761
SmoI	CTYRAG	2 cut(s)	638, 761
Sse9I	AATT	3 cut(s)	16, 239, 287
SsiI	CCGC	8 cut(s)	148, 177, 236, 294, 349, 443, 548, 822
SspMI	CTAG	2 cut(s)	119, 131
SstI	GAGCTC	1 cut(s)	855
StyD4I	CCNGG	3 cut(s)	180, 181, 404
StyI	CCWWGG	1 cut(s)	877
TaaI	ACNGT	3 cut(s)	676, 709, 731
TaiI	ACGT	7 cut(s)	356, 366, 579, 633, 794, 834, 889
TaqI	TCGA	4 cut(s)	243, 285, 432, 689
TasI	AATT	3 cut(s)	16, 239, 287
TauI	GCSGC	3 cut(s)	179, 296, 351
TfiI	GAWTC	3 cut(s)	475, 589, 865
Tru1I	TTAA	1 cut(s)	681
Tru9I	TTAA	1 cut(s)	681
TseFI	GTSAC	2 cut(s)	100, 889
Tsp45I	GTSAC	2 cut(s)	100, 889
TspDTI	ATGAA	3 cut(s)	322, 740, 790
TspMI	CCCGGG	1 cut(s)	181
VpaK11BI	GGWCC	1 cut(s)	84
XapI	RAATTY	3 cut(s)	16, 239, 287
XmaI	CCCGGG	1 cut(s)	181
XspI	CTAG	2 cut(s)	119, 131

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.