Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr15

Orthogroup ID

OG0015274

Physical Location & Seq

Genomic Coordinates Forward (+)

372176 .. 373075

Gene Structure 900 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD15G1006700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 900 bp

ATGGCGACCGTCACAAATTTCATAGTCAAACCACCTTCGTCATCTCAATCTTCAATCCCAAAAACAAGTTGTTTTGTTGCTAAAGGTTTAAGTTTGGTGACGAAGCTTAAACCTTTAGCAACAAAACTTGAAACAAAAAAAAATCAATTCCGCAACTTCACCATCAAGGCCACAGCTGCCGCCGGCACTAAAAAGGTCGAAAGTGACGACAGAGTTCAGCAAGTGCACAGCATCCAGGAATTCGATGAGGCCCTAGGGTTGGCAAAAAACAAGCTCGTTGTCGTCGAGTTTGCCGCCAGCCACAGCGCCGAGAGCAGAAAAATGTACCCTTTTATGGTCGACCTCAGCCGCACATGTAACGATGTCGAGTTTTTATTGGTCATGGGCGACGAGTCGGAAGACACCCGAGAGCTCTGCAGGAGAGAGAACATCGACAAAGTCCCCCACTTCAGCTTCTACAAGAGCATGGAGAAGATTCACGAGGAGGAAGGAATCGATGGTGATCGGCTGAGGGGGGACGTGTTGTACTACGGCGACAACCACTCCGAGGTGGTGCAGCTGCATCAGAGGGAGGACGTGGAGAAGCTGATCGAGGAGCATAAGGCGGACACCAAGCTGATTGTGCTTGACGTGGGGCTCAAGCACTGTGGGCCCTGTGTCAAGGTATATCCGACGGTGGTGAAGCTGTCGAAAAGAATGTCGGACACGGTGGTGTTTGCGAGGATGAACGGCGATGAGAACGACAGCTGCCTGCTGTTCCTCAAGGACATGGAGGTGGTGGAGGTACCTACTTTCTTGTTCATTAGAGACGGCGAGATTTGTGGAAGGTATGTGGGTTCTGGGAAAGGTGAGCTTATTGGTGAAATTCTAAGATACCAAGGAGTCCGTGTGACTTATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004791 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006950 GO:0006979 GO:0008150 GO:0008152 GO:0009414 GO:0009415 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009570 GO:0009628 GO:0009636 GO:0009941 GO:0009987 GO:0010035 GO:0015035 GO:0015036 GO:0016209 GO:0016491 GO:0016651 GO:0016667 GO:0016668 GO:0016671 GO:0019725 GO:0031967 GO:0031975 GO:0033554 GO:0034599 GO:0042221 GO:0042592 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0045454 GO:0047134 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0055114 GO:0065007 GO:0065008 GO:0070887 GO:0097237 GO:0098754 GO:0098869 GO:1901700 GO:1990748

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Thioredoxin

Protein Analysis

300

Amino Acids

33.72

Weight (kDa)

6.11

Isoelectric Point (pI)

32.25

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Thioredoxin	PF00085	76 - 165	3.5e-07	Thioredoxin
Thioredoxin	PF00085	202 - 284	2.4e-11	Thioredoxin

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015274)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G76080
fragaria_vesca	FvH4_2g37930
malus_domestica	MD08G1007500.v1.1 MD15G1006700.v1.1
prunus_persica	Prupe.1G359300_v2.0.a1
pyrus_communis	pycom08g00610 pycom15g00530
rosa_chinensis	RchiOBHm_Chr6g0303681
rosa_laevigata	RLG00000011057
rosa_roxburghii	Rroxscaffold_7G00164490
rosa_rugosa	Rorug06G0323900
rosa_samantha	Rh6AG438200 Rh6BG464900 Rh6CG450500 Rh6DG437100
rosa_wichuraiana	Rw6G037920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	784
AccB1I	GGYRCC	1 cut(s)	784
AccI	GTMKAC	1 cut(s)	339
AciI	CCGC	5 cut(s)	151, 180, 294, 349, 605
AcsI	RAATTY	3 cut(s)	16, 239, 864
AcuI	CTGAAG	1 cut(s)	433
AfaI	GTAC	3 cut(s)	326, 527, 786
AfiI	CCNNNNNNNGG	3 cut(s)	259, 334, 547
AflIII	ACRYGT	2 cut(s)	353, 519
AgsI	TTSAA	2 cut(s)	54, 131
AjiI	CACGTC	3 cut(s)	520, 577, 631
AjnI	CCWGG	1 cut(s)	234
AleI	CACNNNNGTG	1 cut(s)	710
Alw21I	GWGCWC	2 cut(s)	228, 414
Alw26I	GTCTC	1 cut(s)	801
Alw44I	GTGCAC	1 cut(s)	224
Ama87I	CYCGRG	1 cut(s)	405
AoxI	GGCC	3 cut(s)	168, 249, 650
ApaI	GGGCCC	1 cut(s)	654
ApaLI	GTGCAC	1 cut(s)	224
ApeKI	GCWGC	4 cut(s)	176, 556, 559, 747
ApoI	RAATTY	3 cut(s)	16, 239, 864
ArsI	GACNNNNNNTTYG	2 cut(s)	683, 715
Asp718I	GGTACC	1 cut(s)	784
AspA2I	CCTAGG	1 cut(s)	253
AspLEI	GCGC	1 cut(s)	308
AspS9I	GGNCC	3 cut(s)	250, 650, 651
AsuHPI	GGTGA	6 cut(s)	109, 151, 512, 691, 860, 872
AvaI	CYCGRG	1 cut(s)	405
AvrII	CCTAGG	1 cut(s)	253
BaeGI	GKGCMC	2 cut(s)	228, 654
BanI	GGYRCC	1 cut(s)	784
BanII	GRGCYC	3 cut(s)	414, 639, 654
BauI	CACGAG	1 cut(s)	479
BbsI	GAAGAC	1 cut(s)	405
Bbv12I	GWGCWC	2 cut(s)	228, 414
BbvCI	CCTCAGC	2 cut(s)	344, 509
BbvI	GCAGC	4 cut(s)	163, 546, 568, 734
BccI	CCATC	2 cut(s)	170, 491
BceAI	ACGGC	3 cut(s)	547, 745, 826
BcgI	CGANNNNNNTGC	2 cut(s)	396, 430
BciT130I	CCWGG	1 cut(s)	236
BcoDI	GTCTC	1 cut(s)	801
BfaI	CTAG	1 cut(s)	254
BfmI	CTRYAG	1 cut(s)	415
BfoI	RGCGCY	1 cut(s)	309
BisI	GCNGC	7 cut(s)	177, 180, 294, 349, 557, 560, 748
BlnI	CCTAGG	1 cut(s)	253
BlsI	GCNGC	7 cut(s)	178, 181, 295, 350, 558, 561, 749
Bme1390I	CCNGG	1 cut(s)	236
BmeT110I	CYCGRG	1 cut(s)	405
BmgBI	CACGTC	3 cut(s)	520, 577, 631
BmgT120I	GGNCC	3 cut(s)	250, 650, 651
BmiI	GGNNCC	2 cut(s)	652, 786
BmrFI	CCNGG	1 cut(s)	236
BmsI	GCATC	2 cut(s)	240, 571
BpiI	GAAGAC	1 cut(s)	405
Bpu10I	CCTNAGC	2 cut(s)	344, 509
BpuEI	CTTGAG	2 cut(s)	623, 746
Bsa29I	ATCGAT	1 cut(s)	495
BsaBI	GATNNNNATC	1 cut(s)	501
BsaJI	CCNNGG	3 cut(s)	253, 546, 877
BsaXI	ACNNNNNCTCC	3 cut(s)	527, 557, 873
Bsc4I	CCNNNNNNNGG	3 cut(s)	259, 334, 547
Bse118I	RCCGGY	1 cut(s)	182
Bse8I	GATNNNNATC	1 cut(s)	501
BseBI	CCWGG	1 cut(s)	236
BseCI	ATCGAT	1 cut(s)	495
BseDI	CCNNGG	3 cut(s)	253, 546, 877
BseGI	GGATG	2 cut(s)	231, 729
BseJI	GATNNNNATC	1 cut(s)	501
BseLI	CCNNNNNNNGG	3 cut(s)	259, 334, 547
BseMII	CTCAG	2 cut(s)	358, 500
BseRI	GAGGAG	2 cut(s)	497, 608
BseSI	GKGCMC	2 cut(s)	228, 654
BseXI	GCAGC	4 cut(s)	163, 546, 568, 734
BsgI	GTGCAG	1 cut(s)	575
Bsh1285I	CGRYCG	1 cut(s)	9
BshFI	GGCC	3 cut(s)	170, 251, 652
BshNI	GGYRCC	1 cut(s)	784
BshVI	ATCGAT	1 cut(s)	495
BsiEI	CGRYCG	1 cut(s)	9
BsiHKAI	GWGCWC	2 cut(s)	228, 414
BsiHKCI	CYCGRG	1 cut(s)	405
BsiSI	CCGG	1 cut(s)	183
BslFI	GGGAC	2 cut(s)	425, 530
BslI	CCNNNNNNNGG	3 cut(s)	259, 334, 547
BsmAI	GTCTC	1 cut(s)	801
BsmBI	CGTCTC	1 cut(s)	801
BsmFI	GGGAC	2 cut(s)	425, 530
BsnI	GGCC	3 cut(s)	170, 251, 652
BsoBI	CYCGRG	1 cut(s)	405
Bsp120I	GGGCCC	1 cut(s)	650
Bsp1286I	GDGCHC	4 cut(s)	228, 414, 639, 654
Bsp143I	GATC	2 cut(s)	502, 588
BspACI	CCGC	5 cut(s)	151, 180, 294, 349, 605
BspANI	GGCC	3 cut(s)	170, 251, 652
BspCNI	CTCAG	2 cut(s)	357, 501
BspDI	ATCGAT	1 cut(s)	495
BspLI	GGNNCC	2 cut(s)	652, 786
BspMAI	CTGCAG	1 cut(s)	419
BspT107I	GGYRCC	1 cut(s)	784
BsrFI	RCCGGY	1 cut(s)	182
BssAI	RCCGGY	1 cut(s)	182
BssECI	CCNNGG	3 cut(s)	253, 546, 877
BssMI	GATC	2 cut(s)	502, 588
BssSI	CACGAG	1 cut(s)	479
BssT1I	CCWWGG	2 cut(s)	253, 877
Bst2BI	CACGAG	1 cut(s)	479
Bst2UI	CCWGG	1 cut(s)	236
Bst4CI	ACNGT	4 cut(s)	10, 647, 676, 709
BstC8I	GCNNGC	3 cut(s)	184, 298, 752
BstDEI	CTNAG	3 cut(s)	344, 509, 869
BstF5I	GGATG	2 cut(s)	231, 729
BstH2I	RGCGCY	1 cut(s)	309
BstHHI	GCGC	1 cut(s)	308
BstKTI	GATC	2 cut(s)	505, 591
BstMAI	GTCTC	1 cut(s)	801
BstMBI	GATC	2 cut(s)	502, 588
BstMCI	CGRYCG	1 cut(s)	9
BstMWI	GCNNNNNNNGC	4 cut(s)	176, 312, 622, 649
BstNI	CCWGG	1 cut(s)	236
BstNSI	RCATGY	1 cut(s)	357
BstSCI	CCNGG	1 cut(s)	234
BstSFI	CTRYAG	1 cut(s)	415
BstSLI	GKGCMC	2 cut(s)	228, 654
BstV1I	GCAGC	4 cut(s)	163, 546, 568, 734
BstV2I	GAAGAC	1 cut(s)	405
Bsu15I	ATCGAT	1 cut(s)	495
BsuRI	GGCC	3 cut(s)	170, 251, 652
BsuTUI	ATCGAT	1 cut(s)	495
BtgZI	GCGATG	1 cut(s)	747
BtrI	CACGTC	3 cut(s)	520, 577, 631
BtsCI	GGATG	2 cut(s)	231, 729
BtsIMutI	CAGTG	1 cut(s)	643
Cac8I	GCNNGC	3 cut(s)	184, 298, 752
CfoI	GCGC	1 cut(s)	308
Cfr10I	RCCGGY	1 cut(s)	182
Cfr13I	GGNCC	3 cut(s)	250, 650, 651
ClaI	ATCGAT	1 cut(s)	495
Csp6I	GTAC	3 cut(s)	325, 526, 785
CspCI	CAANNNNNGTGG	2 cut(s)	628, 663
CviAII	CATG	4 cut(s)	354, 382, 466, 769
CviQI	GTAC	3 cut(s)	325, 526, 785
DdeI	CTNAG	3 cut(s)	344, 509, 869
DpnI	GATC	2 cut(s)	504, 590
DpnII	GATC	2 cut(s)	502, 588
EciI	GGCGGA	1 cut(s)	620
Ecl136II	GAGCTC	1 cut(s)	412
Eco130I	CCWWGG	2 cut(s)	253, 877
Eco24I	GRGCYC	3 cut(s)	414, 639, 654
Eco53kI	GAGCTC	1 cut(s)	412
Eco57I	CTGAAG	1 cut(s)	433
Eco88I	CYCGRG	1 cut(s)	405
EcoICRI	GAGCTC	1 cut(s)	412
EcoO109I	RGGNCCY	2 cut(s)	250, 651
EcoRI	GAATTC	1 cut(s)	239
EcoRII	CCWGG	1 cut(s)	234
EcoT14I	CCWWGG	2 cut(s)	253, 877
EcoT38I	GRGCYC	3 cut(s)	414, 639, 654
ErhI	CCWWGG	2 cut(s)	253, 877
Esp3I	CGTCTC	1 cut(s)	801
FaeI	CATG	4 cut(s)	357, 385, 469, 772
FaiI	YATR	9 cut(s)	23, 335, 355, 383, 467, 600, 667, 770, 831
FalI	AAGNNNNNCTT	2 cut(s)	837, 869
FaqI	GGGAC	2 cut(s)	425, 530
FatI	CATG	4 cut(s)	353, 381, 465, 768
FblI	GTMKAC	1 cut(s)	339
Fnu4HI	GCNGC	7 cut(s)	177, 180, 294, 349, 557, 560, 748
FokI	GGATG	2 cut(s)	218, 736
FriOI	GRGCYC	3 cut(s)	414, 639, 654
Fsp4HI	GCNGC	7 cut(s)	177, 180, 294, 349, 557, 560, 748
FspBI	CTAG	1 cut(s)	254
GlaI	GCGC	1 cut(s)	307
GluI	GCNGC	7 cut(s)	177, 180, 294, 349, 557, 560, 748
HaeII	RGCGCY	1 cut(s)	309
HaeIII	GGCC	3 cut(s)	170, 251, 652
HapII	CCGG	1 cut(s)	183
HhaI	GCGC	1 cut(s)	308
Hin1II	CATG	4 cut(s)	357, 385, 469, 772
Hin6I	GCGC	1 cut(s)	306
HinP1I	GCGC	1 cut(s)	306
HincII	GTYRAC	1 cut(s)	340
HindII	GTYRAC	1 cut(s)	340
HindIII	AAGCTT	1 cut(s)	104
HinfI	GANTC	4 cut(s)	392, 475, 492, 882
HpaII	CCGG	1 cut(s)	183
HphI	GGTGA	6 cut(s)	109, 151, 512, 691, 860, 872
Hpy166II	GTNNAC	2 cut(s)	226, 340
Hpy188I	TCNGA	5 cut(s)	397, 547, 567, 672, 703
Hpy188III	TCNNGA	1 cut(s)	479
Hpy8I	GTNNAC	2 cut(s)	226, 340
Hpy99I	CGWCG	3 cut(s)	287, 392, 676
HpyAV	CCTTC	3 cut(s)	45, 482, 819
HpyCH4III	ACNGT	4 cut(s)	10, 647, 676, 709
HpyCH4IV	ACGT	3 cut(s)	519, 576, 630
HpyCH4V	TGCA	4 cut(s)	226, 417, 556, 562
HpyF10VI	GCNNNNNNNGC	4 cut(s)	176, 312, 622, 649
HpyF3I	CTNAG	3 cut(s)	344, 509, 869
HpySE526I	ACGT	3 cut(s)	519, 576, 630
Hsp92II	CATG	4 cut(s)	357, 385, 469, 772
HspAI	GCGC	1 cut(s)	306
KpnI	GGTACC	1 cut(s)	788
KroI	GCCGGC	1 cut(s)	182
KroNI	GCCGGC	1 cut(s)	184
Kzo9I	GATC	2 cut(s)	502, 588
LmnI	GCTCC	1 cut(s)	595
LpnPI	CCDG	8 cut(s)	196, 221, 248, 310, 403, 667, 764, 825
Lsp1109I	GCAGC	4 cut(s)	163, 546, 568, 734
LweI	GCATC	2 cut(s)	240, 571
MaeI	CTAG	1 cut(s)	254
MaeII	ACGT	3 cut(s)	519, 576, 630
MaeIII	GTNAC	5 cut(s)	10, 97, 203, 356, 889
MalI	GATC	2 cut(s)	504, 590
MboI	GATC	2 cut(s)	502, 588
MboII	GAAGA	3 cut(s)	42, 410, 484
MhlI	GDGCHC	4 cut(s)	228, 414, 639, 654
MluCI	AATT	4 cut(s)	16, 146, 239, 864
MlyI	GAGTC	2 cut(s)	401, 891
MmeI	TCCRAC	3 cut(s)	375, 681, 695
MroNI	GCCGGC	1 cut(s)	182
MseI	TTAA	2 cut(s)	89, 108
MslI	CAYNNNNRTG	2 cut(s)	710, 773
MspA1I	CMGCKG	3 cut(s)	176, 559, 747
MspI	CCGG	1 cut(s)	183
MspR9I	CCNGG	1 cut(s)	236
MvaI	CCWGG	1 cut(s)	236
MwoI	GCNNNNNNNGC	4 cut(s)	176, 312, 622, 649
NaeI	GCCGGC	1 cut(s)	184
NdeII	GATC	2 cut(s)	502, 588
NgoMIV	GCCGGC	1 cut(s)	182
NlaIII	CATG	4 cut(s)	357, 385, 469, 772
NlaIV	GGNNCC	2 cut(s)	652, 786
NmeAIII	GCCGAG	1 cut(s)	334
NmuCI	GTSAC	4 cut(s)	10, 97, 203, 889
NspI	RCATGY	1 cut(s)	357
OliI	CACNNNNGTG	1 cut(s)	710
PciI	ACATGT	1 cut(s)	353
PcsI	WCGNNNNNNNCGW	2 cut(s)	204, 282
PdiI	GCCGGC	1 cut(s)	184
PfeI	GAWTC	2 cut(s)	475, 492
PflFI	GACNNNGTC	1 cut(s)	437
PfoI	TCCNGGA	1 cut(s)	234
PkrI	GCNGC	7 cut(s)	178, 181, 295, 350, 558, 561, 749
PleI	GAGTC	2 cut(s)	400, 890
PpsI	GAGTC	2 cut(s)	400, 890
PscI	ACATGT	1 cut(s)	353
Psp124BI	GAGCTC	1 cut(s)	414
Psp6I	CCWGG	1 cut(s)	234
PspGI	CCWGG	1 cut(s)	234
PspN4I	GGNNCC	2 cut(s)	652, 786
PspOMI	GGGCCC	1 cut(s)	650
PspPI	GGNCC	3 cut(s)	250, 650, 651
PstI	CTGCAG	1 cut(s)	419
PsyI	GACNNNGTC	1 cut(s)	437
PvuII	CAGCTG	3 cut(s)	176, 559, 747
RsaI	GTAC	3 cut(s)	326, 527, 786
RsaNI	GTAC	3 cut(s)	325, 526, 785
RseI	CAYNNNNRTG	2 cut(s)	710, 773
SacI	GAGCTC	1 cut(s)	414
SalI	GTCGAC	1 cut(s)	338
SaqAI	TTAA	2 cut(s)	89, 108
SatI	GCNGC	7 cut(s)	177, 180, 294, 349, 557, 560, 748
Sau3AI	GATC	2 cut(s)	502, 588
Sau96I	GGNCC	3 cut(s)	250, 650, 651
SchI	GAGTC	2 cut(s)	401, 891
ScrFI	CCNGG	1 cut(s)	236
SduI	GDGCHC	4 cut(s)	228, 414, 639, 654
SfaNI	GCATC	2 cut(s)	240, 571
SfcI	CTRYAG	1 cut(s)	415
SmiMI	CAYNNNNRTG	2 cut(s)	710, 773
SmlI	CTYRAG	2 cut(s)	638, 761
SmoI	CTYRAG	2 cut(s)	638, 761
Sse9I	AATT	4 cut(s)	16, 146, 239, 864
SsiI	CCGC	5 cut(s)	151, 180, 294, 349, 605
SspMI	CTAG	1 cut(s)	254
SstI	GAGCTC	1 cut(s)	414
StyD4I	CCNGG	1 cut(s)	234
StyI	CCWWGG	2 cut(s)	253, 877
TaaI	ACNGT	4 cut(s)	10, 647, 676, 709
TaiI	ACGT	3 cut(s)	522, 579, 633
TaqI	TCGA	9 cut(s)	198, 243, 285, 339, 366, 432, 495, 591, 689
TasI	AATT	4 cut(s)	16, 146, 239, 864
TatI	WGTACW	1 cut(s)	525
TauI	GCSGC	3 cut(s)	182, 296, 351
TfiI	GAWTC	2 cut(s)	475, 492
Tru1I	TTAA	2 cut(s)	89, 108
Tru9I	TTAA	2 cut(s)	89, 108
TscAI	CASTG	1 cut(s)	650
TseFI	GTSAC	4 cut(s)	10, 97, 203, 889
TseI	GCWGC	4 cut(s)	176, 556, 559, 747
Tsp45I	GTSAC	4 cut(s)	10, 97, 203, 889
TspDTI	ATGAA	3 cut(s)	10, 740, 790
TspGWI	ACGGA	1 cut(s)	875
TspRI	CASTG	1 cut(s)	650
Tth111I	GACNNNGTC	1 cut(s)	437
VneI	GTGCAC	1 cut(s)	224
XapI	RAATTY	3 cut(s)	16, 239, 864
XceI	RCATGY	1 cut(s)	357
XmaJI	CCTAGG	1 cut(s)	253
XmiI	GTMKAC	1 cut(s)	339
XspI	CTAG	1 cut(s)	254

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.