Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr08

Orthogroup ID

OG0015274

Physical Location & Seq

Genomic Coordinates Forward (+)

598257 .. 599156

Gene Structure 900 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD08G1007500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 900 bp

ATGGCGACCATCACAAATTTCATAGTCAAACCACTTTCGTCATCTCAATTTTCAATCCCAAGAACAAGTTGTTATGTTGGTAAAGGTTTAAGTTTGGTGACGAAGCTTAAACCTTTACCTACAAAACTTGAAACAAAAAGAAACCAATTCCGCAACTTCACCATCAACGCCAGAGCCACCACCGGCACTAAAGAGGTTCGAAGTGACGAGAGAGTTCAGCGAGTGCACAGCATCCAGGAATTCGACGAGGCCCTCGAGTTGGCCAAAAACAAGCTCGTTGTCGTCGAGTTTGCCGCCAGCGACAGCGCCCAGAGCCAAAAAATGTACCCTTTCATGGTCGACCTCAGCCGCACGTGTAACGACGTAGAGTTTTTATTGGTCATGGGTGACGAGTCGGAAGACACCCGAGAGCTCTGCAGGAGAGAGAACATCGACAAAGTTCCCCACTTCAGCTTCTACAAGAGCATGGAGAAGATTCACGAGGAGGAAGGAATAGACGGCGATCGGCTGAGGGGGGACGTGTTGTATTACGGCGACAACCACTCCGCGGTGGTTCAGCTGCATCAGAAGGAGGACGTAGAGAAGCTGATTGAGGATCATAAGGTGGACAGCAAGCTGATTGTGCTTGACGTGGGGCTCAAGCATTGTGGGCCCTGTGTCAAGGTGTATCCGACGGTGGTGAAGCTGTCGAAGAAGATGTCGGACACGGTGGTGTTTGCGAGGATGAACGGCGATGAGAACGACAGCTGCATGCAGTTCCTCAAGGACATGGAGGTGGTGGAGGTGCCTACTTTCTTGTTCATTAGAGATGGTGAAATTTGTGGAAGATATGTGGGTTCTGGTAAAGGAGAGCTTATTGGTGAAATTCTGAGATACCAAGGAGTCCGTGTGACTTACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004791 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006950 GO:0006979 GO:0008150 GO:0008152 GO:0009414 GO:0009415 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009570 GO:0009628 GO:0009636 GO:0009941 GO:0009987 GO:0010035 GO:0015035 GO:0015036 GO:0016209 GO:0016491 GO:0016651 GO:0016667 GO:0016668 GO:0016671 GO:0019725 GO:0031967 GO:0031975 GO:0033554 GO:0034599 GO:0042221 GO:0042592 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0045454 GO:0047134 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0055114 GO:0065007 GO:0065008 GO:0070887 GO:0097237 GO:0098754 GO:0098869 GO:1901700 GO:1990748

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Thioredoxin

Protein Analysis

300

Amino Acids

34.01

Weight (kDa)

6.04

Isoelectric Point (pI)

32.39

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Thioredoxin	PF00085	76 - 165	6.5e-07	Thioredoxin
Thioredoxin	PF00085	189 - 284	3.2e-12	Thioredoxin

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015274)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G76080
fragaria_vesca	FvH4_2g37930
malus_domestica	MD08G1007500.v1.1 MD15G1006700.v1.1
prunus_persica	Prupe.1G359300_v2.0.a1
pyrus_communis	pycom08g00610 pycom15g00530
rosa_chinensis	RchiOBHm_Chr6g0303681
rosa_laevigata	RLG00000011057
rosa_roxburghii	Rroxscaffold_7G00164490
rosa_rugosa	Rorug06G0323900
rosa_samantha	Rh6AG438200 Rh6BG464900 Rh6CG450500 Rh6DG437100
rosa_wichuraiana	Rw6G037920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	784
AccI	GTMKAC	1 cut(s)	339
AccII	CGCG	1 cut(s)	548
AciI	CCGC	5 cut(s)	151, 294, 349, 546, 548
AclWI	GGATC	1 cut(s)	603
AcoI	YGGCCR	1 cut(s)	261
AcsI	RAATTY	4 cut(s)	16, 239, 816, 864
AcuI	CTGAAG	1 cut(s)	433
AcvI	CACGTG	1 cut(s)	354
AfaI	GTAC	1 cut(s)	326
AfiI	CCNNNNNNNGG	3 cut(s)	259, 334, 547
AflIII	ACRYGT	2 cut(s)	353, 519
AgsI	TTSAA	2 cut(s)	54, 131
AjiI	CACGTC	2 cut(s)	520, 631
AjnI	CCWGG	1 cut(s)	234
AleI	CACNNNNGTG	1 cut(s)	710
Alw21I	GWGCWC	2 cut(s)	228, 414
Alw44I	GTGCAC	1 cut(s)	224
AlwI	GGATC	1 cut(s)	603
Ama87I	CYCGRG	2 cut(s)	254, 405
AoxI	GGCC	3 cut(s)	249, 261, 650
ApaI	GGGCCC	1 cut(s)	654
ApaLI	GTGCAC	1 cut(s)	224
ApeKI	GCWGC	2 cut(s)	559, 747
ApoI	RAATTY	4 cut(s)	16, 239, 816, 864
ArsI	GACNNNNNNTTYG	2 cut(s)	683, 715
AspLEI	GCGC	1 cut(s)	308
AspS9I	GGNCC	3 cut(s)	250, 650, 651
AsuHPI	GGTGA	6 cut(s)	109, 151, 398, 691, 824, 872
AsuII	TTCGAA	1 cut(s)	199
AvaI	CYCGRG	2 cut(s)	254, 405
BaeGI	GKGCMC	2 cut(s)	228, 654
BalI	TGGCCA	1 cut(s)	263
BanI	GGYRCC	1 cut(s)	784
BanII	GRGCYC	3 cut(s)	414, 639, 654
BauI	CACGAG	1 cut(s)	479
BbrPI	CACGTG	1 cut(s)	354
BbsI	GAAGAC	1 cut(s)	405
Bbv12I	GWGCWC	2 cut(s)	228, 414
BbvCI	CCTCAGC	2 cut(s)	344, 509
BbvI	GCAGC	2 cut(s)	546, 734
BccI	CCATC	3 cut(s)	17, 170, 803
BceAI	ACGGC	3 cut(s)	514, 547, 745
BcgI	CGANNNNNNTGC	2 cut(s)	396, 430
BciT130I	CCWGG	1 cut(s)	236
BciVI	GTATCC	1 cut(s)	678
BfaI	CTAG	1 cut(s)	898
BfmI	CTRYAG	1 cut(s)	415
BfoI	RGCGCY	1 cut(s)	309
BfuI	GTATCC	1 cut(s)	678
BisI	GCNGC	4 cut(s)	294, 349, 560, 748
BlsI	GCNGC	4 cut(s)	295, 350, 561, 749
Bme1390I	CCNGG	1 cut(s)	236
BmeT110I	CYCGRG	2 cut(s)	254, 405
BmgBI	CACGTC	2 cut(s)	520, 631
BmgT120I	GGNCC	3 cut(s)	250, 650, 651
BmiI	GGNNCC	2 cut(s)	652, 786
BmrFI	CCNGG	1 cut(s)	236
BmsI	GCATC	2 cut(s)	240, 571
BpiI	GAAGAC	1 cut(s)	405
Bpu10I	CCTNAGC	2 cut(s)	344, 509
Bpu14I	TTCGAA	1 cut(s)	199
BpuEI	CTTGAG	2 cut(s)	623, 746
BsaAI	YACGTR	1 cut(s)	354
BsaJI	CCNNGG	2 cut(s)	546, 877
BsaXI	ACNNNNNCTCC	3 cut(s)	527, 557, 873
Bsc4I	CCNNNNNNNGG	3 cut(s)	259, 334, 547
Bse118I	RCCGGY	1 cut(s)	182
BseBI	CCWGG	1 cut(s)	236
BseDI	CCNNGG	2 cut(s)	546, 877
BseGI	GGATG	2 cut(s)	231, 729
BseLI	CCNNNNNNNGG	3 cut(s)	259, 334, 547
BseMII	CTCAG	3 cut(s)	358, 500, 860
BseRI	GAGGAG	1 cut(s)	497
BseSI	GKGCMC	2 cut(s)	228, 654
BseXI	GCAGC	2 cut(s)	546, 734
Bsh1236I	CGCG	1 cut(s)	548
Bsh1285I	CGRYCG	1 cut(s)	505
BshFI	GGCC	3 cut(s)	251, 263, 652
BshNI	GGYRCC	1 cut(s)	784
BsiEI	CGRYCG	1 cut(s)	505
BsiHKAI	GWGCWC	2 cut(s)	228, 414
BsiHKCI	CYCGRG	2 cut(s)	254, 405
BsiSI	CCGG	1 cut(s)	183
BslFI	GGGAC	1 cut(s)	530
BslI	CCNNNNNNNGG	3 cut(s)	259, 334, 547
BsmFI	GGGAC	1 cut(s)	530
BsnI	GGCC	3 cut(s)	251, 263, 652
BsoBI	CYCGRG	2 cut(s)	254, 405
Bsp119I	TTCGAA	1 cut(s)	199
Bsp120I	GGGCCC	1 cut(s)	650
Bsp1286I	GDGCHC	4 cut(s)	228, 414, 639, 654
Bsp143I	GATC	2 cut(s)	502, 595
BspACI	CCGC	5 cut(s)	151, 294, 349, 546, 548
BspANI	GGCC	3 cut(s)	251, 263, 652
BspCNI	CTCAG	3 cut(s)	357, 501, 861
BspFNI	CGCG	1 cut(s)	548
BspLI	GGNNCC	2 cut(s)	652, 786
BspMAI	CTGCAG	1 cut(s)	419
BspPI	GGATC	1 cut(s)	603
BspT104I	TTCGAA	1 cut(s)	199
BspT107I	GGYRCC	1 cut(s)	784
BsrFI	RCCGGY	1 cut(s)	182
BssAI	RCCGGY	1 cut(s)	182
BssECI	CCNNGG	2 cut(s)	546, 877
BssMI	GATC	2 cut(s)	502, 595
BssSI	CACGAG	1 cut(s)	479
BssT1I	CCWWGG	1 cut(s)	877
Bst2BI	CACGAG	1 cut(s)	479
Bst2UI	CCWGG	1 cut(s)	236
Bst4CI	ACNGT	2 cut(s)	676, 709
BstBAI	YACGTR	1 cut(s)	354
BstBI	TTCGAA	1 cut(s)	199
BstC8I	GCNNGC	3 cut(s)	298, 614, 752
BstDEI	CTNAG	3 cut(s)	344, 509, 869
BstDSI	CCRYGG	1 cut(s)	546
BstF5I	GGATG	2 cut(s)	231, 729
BstFNI	CGCG	1 cut(s)	548
BstH2I	RGCGCY	1 cut(s)	309
BstHHI	GCGC	1 cut(s)	308
BstKTI	GATC	2 cut(s)	505, 598
BstMBI	GATC	2 cut(s)	502, 595
BstMCI	CGRYCG	1 cut(s)	505
BstMWI	GCNNNNNNNGC	3 cut(s)	312, 622, 649
BstNI	CCWGG	1 cut(s)	236
BstNSI	RCATGY	1 cut(s)	754
BstSCI	CCNGG	1 cut(s)	234
BstSFI	CTRYAG	1 cut(s)	415
BstSLI	GKGCMC	2 cut(s)	228, 654
BstUI	CGCG	1 cut(s)	548
BstV1I	GCAGC	2 cut(s)	546, 734
BstV2I	GAAGAC	1 cut(s)	405
BsuI	GTATCC	1 cut(s)	678
BsuRI	GGCC	3 cut(s)	251, 263, 652
BtgI	CCRYGG	1 cut(s)	546
BtgZI	GCGATG	1 cut(s)	747
BtrI	CACGTC	2 cut(s)	520, 631
BtsCI	GGATG	2 cut(s)	231, 729
Cac8I	GCNNGC	3 cut(s)	298, 614, 752
CfoI	GCGC	1 cut(s)	308
Cfr10I	RCCGGY	1 cut(s)	182
Cfr13I	GGNCC	3 cut(s)	250, 650, 651
Cfr42I	CCGCGG	1 cut(s)	549
Csp6I	GTAC	1 cut(s)	325
CspCI	CAANNNNNGTGG	2 cut(s)	628, 663
CviAII	CATG	5 cut(s)	334, 382, 466, 751, 769
CviQI	GTAC	1 cut(s)	325
DdeI	CTNAG	3 cut(s)	344, 509, 869
DpnI	GATC	2 cut(s)	504, 597
DpnII	GATC	2 cut(s)	502, 595
EaeI	YGGCCR	1 cut(s)	261
Ecl136II	GAGCTC	1 cut(s)	412
Eco130I	CCWWGG	1 cut(s)	877
Eco24I	GRGCYC	3 cut(s)	414, 639, 654
Eco53kI	GAGCTC	1 cut(s)	412
Eco57I	CTGAAG	1 cut(s)	433
Eco72I	CACGTG	1 cut(s)	354
Eco88I	CYCGRG	2 cut(s)	254, 405
EcoICRI	GAGCTC	1 cut(s)	412
EcoO109I	RGGNCCY	2 cut(s)	250, 651
EcoRI	GAATTC	1 cut(s)	239
EcoRII	CCWGG	1 cut(s)	234
EcoT14I	CCWWGG	1 cut(s)	877
EcoT38I	GRGCYC	3 cut(s)	414, 639, 654
ErhI	CCWWGG	1 cut(s)	877
FaeI	CATG	5 cut(s)	337, 385, 469, 754, 772
FaiI	YATR	9 cut(s)	23, 75, 335, 383, 467, 600, 752, 770, 831
FalI	AAGNNNNNCTT	2 cut(s)	837, 869
FaqI	GGGAC	1 cut(s)	530
FatI	CATG	5 cut(s)	333, 381, 465, 750, 768
FblI	GTMKAC	1 cut(s)	339
Fnu4HI	GCNGC	4 cut(s)	294, 349, 560, 748
FokI	GGATG	2 cut(s)	218, 736
FriOI	GRGCYC	3 cut(s)	414, 639, 654
Fsp4HI	GCNGC	4 cut(s)	294, 349, 560, 748
FspBI	CTAG	1 cut(s)	898
GlaI	GCGC	1 cut(s)	307
GluI	GCNGC	4 cut(s)	294, 349, 560, 748
HaeII	RGCGCY	1 cut(s)	309
HaeIII	GGCC	3 cut(s)	251, 263, 652
HapII	CCGG	1 cut(s)	183
HhaI	GCGC	1 cut(s)	308
Hin1II	CATG	5 cut(s)	337, 385, 469, 754, 772
Hin6I	GCGC	1 cut(s)	306
HinP1I	GCGC	1 cut(s)	306
HincII	GTYRAC	1 cut(s)	340
HindII	GTYRAC	1 cut(s)	340
HindIII	AAGCTT	1 cut(s)	104
HinfI	GANTC	3 cut(s)	392, 475, 882
HpaII	CCGG	1 cut(s)	183
HphI	GGTGA	6 cut(s)	109, 151, 398, 691, 824, 872
Hpy166II	GTNNAC	3 cut(s)	226, 340, 607
Hpy188I	TCNGA	5 cut(s)	397, 567, 672, 703, 870
Hpy188III	TCNNGA	1 cut(s)	479
Hpy8I	GTNNAC	3 cut(s)	226, 340, 607
Hpy99I	CGWCG	4 cut(s)	248, 287, 365, 676
HpyAV	CCTTC	2 cut(s)	482, 562
HpyCH4III	ACNGT	2 cut(s)	676, 709
HpyCH4IV	ACGT	5 cut(s)	353, 363, 519, 576, 630
HpyCH4V	TGCA	5 cut(s)	226, 417, 562, 750, 754
HpyF10VI	GCNNNNNNNGC	3 cut(s)	312, 622, 649
HpyF3I	CTNAG	3 cut(s)	344, 509, 869
HpySE526I	ACGT	5 cut(s)	353, 363, 519, 576, 630
Hsp92II	CATG	5 cut(s)	337, 385, 469, 754, 772
HspAI	GCGC	1 cut(s)	306
KspI	CCGCGG	1 cut(s)	549
Kzo9I	GATC	2 cut(s)	502, 595
LpnPI	CCDG	9 cut(s)	184, 196, 221, 248, 310, 323, 403, 667, 825
Lsp1109I	GCAGC	2 cut(s)	546, 734
LweI	GCATC	2 cut(s)	240, 571
MaeI	CTAG	1 cut(s)	898
MaeII	ACGT	5 cut(s)	353, 363, 519, 576, 630
MaeIII	GTNAC	5 cut(s)	97, 203, 356, 386, 889
MalI	GATC	2 cut(s)	504, 597
MboI	GATC	2 cut(s)	502, 595
MboII	GAAGA	5 cut(s)	410, 484, 703, 706, 837
MhlI	GDGCHC	4 cut(s)	228, 414, 639, 654
MlsI	TGGCCA	1 cut(s)	263
MluCI	AATT	6 cut(s)	16, 47, 146, 239, 816, 864
MluNI	TGGCCA	1 cut(s)	263
MlyI	GAGTC	2 cut(s)	401, 891
MmeI	TCCRAC	3 cut(s)	375, 681, 695
Mox20I	TGGCCA	1 cut(s)	263
MscI	TGGCCA	1 cut(s)	263
MseI	TTAA	2 cut(s)	89, 108
MslI	CAYNNNNRTG	2 cut(s)	710, 773
Msp20I	TGGCCA	1 cut(s)	263
MspA1I	CMGCKG	3 cut(s)	548, 559, 747
MspI	CCGG	1 cut(s)	183
MspR9I	CCNGG	1 cut(s)	236
MvaI	CCWGG	1 cut(s)	236
MvnI	CGCG	1 cut(s)	548
MwoI	GCNNNNNNNGC	3 cut(s)	312, 622, 649
NdeII	GATC	2 cut(s)	502, 595
NlaIII	CATG	5 cut(s)	337, 385, 469, 754, 772
NlaIV	GGNNCC	2 cut(s)	652, 786
NmuCI	GTSAC	4 cut(s)	97, 203, 386, 889
NspI	RCATGY	1 cut(s)	754
NspV	TTCGAA	1 cut(s)	199
OliI	CACNNNNGTG	1 cut(s)	710
PaeI	GCATGC	1 cut(s)	754
PaeR7I	CTCGAG	1 cut(s)	254
PcsI	WCGNNNNNNNCGW	2 cut(s)	252, 282
PfeI	GAWTC	1 cut(s)	475
PfoI	TCCNGGA	1 cut(s)	234
PkrI	GCNGC	4 cut(s)	295, 350, 561, 749
Ple19I	CGATCG	1 cut(s)	505
PleI	GAGTC	2 cut(s)	400, 890
PmaCI	CACGTG	1 cut(s)	354
PmlI	CACGTG	1 cut(s)	354
PpsI	GAGTC	2 cut(s)	400, 890
Ppu21I	YACGTR	1 cut(s)	354
Psp124BI	GAGCTC	1 cut(s)	414
Psp6I	CCWGG	1 cut(s)	234
PspCI	CACGTG	1 cut(s)	354
PspGI	CCWGG	1 cut(s)	234
PspN4I	GGNNCC	2 cut(s)	652, 786
PspOMI	GGGCCC	1 cut(s)	650
PspPI	GGNCC	3 cut(s)	250, 650, 651
PspXI	VCTCGAGB	1 cut(s)	254
PstI	CTGCAG	1 cut(s)	419
PvuI	CGATCG	1 cut(s)	505
PvuII	CAGCTG	2 cut(s)	559, 747
RsaI	GTAC	1 cut(s)	326
RsaNI	GTAC	1 cut(s)	325
RseI	CAYNNNNRTG	2 cut(s)	710, 773
SacI	GAGCTC	1 cut(s)	414
SacII	CCGCGG	1 cut(s)	549
SalI	GTCGAC	1 cut(s)	338
SaqAI	TTAA	2 cut(s)	89, 108
SatI	GCNGC	4 cut(s)	294, 349, 560, 748
Sau3AI	GATC	2 cut(s)	502, 595
Sau96I	GGNCC	3 cut(s)	250, 650, 651
SchI	GAGTC	2 cut(s)	401, 891
ScrFI	CCNGG	1 cut(s)	236
SduI	GDGCHC	4 cut(s)	228, 414, 639, 654
SfaNI	GCATC	2 cut(s)	240, 571
SfcI	CTRYAG	1 cut(s)	415
Sfr274I	CTCGAG	1 cut(s)	254
Sfr303I	CCGCGG	1 cut(s)	549
SfuI	TTCGAA	1 cut(s)	199
SgrBI	CCGCGG	1 cut(s)	549
SlaI	CTCGAG	1 cut(s)	254
SmiMI	CAYNNNNRTG	2 cut(s)	710, 773
SmlI	CTYRAG	3 cut(s)	254, 638, 761
SmoI	CTYRAG	3 cut(s)	254, 638, 761
SphI	GCATGC	1 cut(s)	754
Sse9I	AATT	6 cut(s)	16, 47, 146, 239, 816, 864
SsiI	CCGC	5 cut(s)	151, 294, 349, 546, 548
SspMI	CTAG	1 cut(s)	898
SstI	GAGCTC	1 cut(s)	414
StyD4I	CCNGG	1 cut(s)	234
StyI	CCWWGG	1 cut(s)	877
TaaI	ACNGT	2 cut(s)	676, 709
TaiI	ACGT	5 cut(s)	356, 366, 522, 579, 633
TaqI	TCGA	7 cut(s)	199, 243, 255, 285, 339, 432, 689
TasI	AATT	6 cut(s)	16, 47, 146, 239, 816, 864
TauI	GCSGC	2 cut(s)	296, 351
TfiI	GAWTC	1 cut(s)	475
Tru1I	TTAA	2 cut(s)	89, 108
Tru9I	TTAA	2 cut(s)	89, 108
TseFI	GTSAC	4 cut(s)	97, 203, 386, 889
TseI	GCWGC	2 cut(s)	559, 747
Tsp45I	GTSAC	4 cut(s)	97, 203, 386, 889
TspDTI	ATGAA	4 cut(s)	10, 322, 740, 790
TspGWI	ACGGA	1 cut(s)	875
VneI	GTGCAC	1 cut(s)	224
XapI	RAATTY	4 cut(s)	16, 239, 816, 864
XceI	RCATGY	1 cut(s)	754
XhoI	CTCGAG	1 cut(s)	254
XmiI	GTMKAC	1 cut(s)	339
XspI	CTAG	1 cut(s)	898

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.