Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0015274

Physical Location & Seq

Genomic Coordinates Reverse (-)

63330753 .. 63332045

Gene Structure 1293 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ27283

Sequence Viewer

CDS Protein Promoter (2k)

Length: 975 bp

ATGCTTCCTCACACCACTCTCCCCTGTACTTCTCTCTACACTCATAGCTTCAAGTTCCCTCTTAGCTTCAGATCAATGGCGACCATCACAAATTTCGTAGCCAAACCACCTTTATCTCTATCTTCAATCCCCAAAGCCAGCTCTCTTTACCACCACCGGTCCTTCTTATCCTTAGTCACCAAACTCAAACCTCTAGCAACCAAACTAGAAGCCAAACAAGCCCGCTTCAACTTCACCACAAAGGCCACGGCCGCCCCGGGCACTAAGAAAGTGGGGAGCGATGAGAGAGTAGTACGAGTCCACAGCATAGCGGAATTCGATGGAGTGCTTCAATCGGCAAAGAACAAGCTCGTGGTGGTCGAATTCGCCGCCAGCCACAGCTCCGAGAGCAAGAAAATGTACCCCTTCATGGTTGATCTCAGCCGCACGTGTGGCGACGTGGAGTTCTTACTGGTGATGGGAGACGAAAACGAGAAGACCAGGGAGCTATGCAGGAGAGAAAAAATCGAGAAGTTTCCGCACTTCAGCTTCTACAAGAGCATGGAGAAGATTCACGAGGAGGAAGGCATAGACGGCAACCAGCTTGTCGGAGATGTGTTATATTACGGCGACAACCATTCGGCGGTGGTGCAGTTACATAACCGAGAGGACGTTGAGAAGTTGATTCAAGATCACAAGGTTGACCATAAGCTGATTGTGCTTGACGTGGGGCTCAAGCATTGTGGGCCGTGCGTGAAGGTGTATCCGACGGTGGTTAAGCTGTCGAAGAGGATGGAGGATACGGTGGTGTTTGCGAGGATGAACGGTGATGAGAACGACAGCTGTCTGCAGTTCCTCAAGGACATGGAGGTGGTGGAGGTGCCGACGTTCTTGTTCATCAGGGATGGTGAGATTTGCGGAAGGTACGTGGGCTCTGGGAAGGGTGAGCTCATTGGTGAGATTCTGAGATACCAAGGAGTACGTGTCACTTACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004791 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006950 GO:0006979 GO:0008150 GO:0008152 GO:0009414 GO:0009415 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009570 GO:0009628 GO:0009636 GO:0009941 GO:0009987 GO:0010035 GO:0015035 GO:0015036 GO:0016209 GO:0016491 GO:0016651 GO:0016667 GO:0016668 GO:0016671 GO:0019725 GO:0031967 GO:0031975 GO:0033554 GO:0034599 GO:0042221 GO:0042592 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0045454 GO:0047134 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0055114 GO:0065007 GO:0065008 GO:0070887 GO:0097237 GO:0098754 GO:0098869 GO:1901700 GO:1990748

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Thioredoxin

Protein Analysis

324

Amino Acids

36.6

Weight (kDa)

8.35

Isoelectric Point (pI)

32.43

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Thioredoxin	PF00085	99 - 191	4.5e-08	Thioredoxin
Thioredoxin	PF00085	215 - 309	1.1e-11	Thioredoxin

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015274)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G76080
fragaria_vesca	FvH4_2g37930
malus_domestica	MD08G1007500.v1.1 MD15G1006700.v1.1
prunus_persica	Prupe.1G359300_v2.0.a1
pyrus_communis	pycom08g00610 pycom15g00530
rosa_chinensis	RchiOBHm_Chr6g0303681
rosa_laevigata	RLG00000011057
rosa_roxburghii	Rroxscaffold_7G00164490
rosa_rugosa	Rorug06G0323900
rosa_samantha	Rh6AG438200 Rh6BG464900 Rh6CG450500 Rh6DG437100
rosa_wichuraiana	Rw6G037920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	859
AciI	CCGC	8 cut(s)	223, 252, 311, 369, 424, 518, 623, 897
AcoI	YGGCCR	1 cut(s)	249
AcsI	RAATTY	3 cut(s)	91, 314, 362
AcuI	CTGAAG	2 cut(s)	52, 508
AcvI	CACGTG	1 cut(s)	429
AfaI	GTAC	5 cut(s)	28, 294, 401, 905, 960
AfiI	CCNNNNNNNGG	2 cut(s)	409, 622
AflIII	ACRYGT	2 cut(s)	428, 961
AgeI	ACCGGT	1 cut(s)	156
AgsI	TTSAA	5 cut(s)	52, 126, 229, 332, 668
AjiI	CACGTC	2 cut(s)	439, 706
AjnI	CCWGG	1 cut(s)	479
Alw21I	GWGCWC	1 cut(s)	930
Alw26I	GTCTC	1 cut(s)	456
Ama87I	CYCGRG	1 cut(s)	256
AoxI	GGCC	3 cut(s)	243, 249, 725
ApoI	RAATTY	3 cut(s)	91, 314, 362
AsiGI	ACCGGT	1 cut(s)	156
AspS9I	GGNCC	2 cut(s)	159, 725
AsuC2I	CCSGG	2 cut(s)	257, 258
AsuHPI	GGTGA	7 cut(s)	169, 226, 466, 818, 899, 935, 947
AvaI	CYCGRG	1 cut(s)	256
AvaII	GGWCC	1 cut(s)	159
BaeGI	GKGCMC	1 cut(s)	263
BaeI	ACNNNNGTAYC	2 cut(s)	771, 804
BanI	GGYRCC	1 cut(s)	859
BanII	GRGCYC	3 cut(s)	714, 914, 930
BauI	CACGAG	2 cut(s)	350, 554
BbrPI	CACGTG	1 cut(s)	429
BbsI	GAAGAC	1 cut(s)	482
Bbv12I	GWGCWC	1 cut(s)	930
BccI	CCATC	5 cut(s)	92, 314, 451, 766, 878
BceAI	ACGGC	4 cut(s)	264, 589, 622, 712
BciT130I	CCWGG	1 cut(s)	481
BciVI	GTATCC	2 cut(s)	753, 772
BcnI	CCSGG	2 cut(s)	257, 258
BcoDI	GTCTC	1 cut(s)	456
BfaI	CTAG	2 cut(s)	194, 206
BfmI	CTRYAG	1 cut(s)	827
BfuI	GTATCC	2 cut(s)	753, 772
BisI	GCNGC	3 cut(s)	252, 369, 424
BlsI	GCNGC	3 cut(s)	253, 370, 425
Bme1390I	CCNGG	3 cut(s)	257, 258, 481
Bme18I	GGWCC	1 cut(s)	159
BmeT110I	CYCGRG	1 cut(s)	256
BmgBI	CACGTC	2 cut(s)	439, 706
BmgT120I	GGNCC	2 cut(s)	159, 725
BmiI	GGNNCC	1 cut(s)	861
BmrFI	CCNGG	3 cut(s)	257, 258, 481
BoxI	GACNNNNGTC	1 cut(s)	822
BpiI	GAAGAC	1 cut(s)	482
BpuEI	CTTGAG	2 cut(s)	698, 821
BpuMI	CCSGG	2 cut(s)	257, 258
BsaAI	YACGTR	3 cut(s)	429, 907, 962
BsaJI	CCNNGG	5 cut(s)	246, 255, 256, 480, 952
BsaWI	WCCGGW	1 cut(s)	156
BsaXI	ACNNNNNCTCC	1 cut(s)	948
Bsc4I	CCNNNNNNNGG	2 cut(s)	409, 622
Bse118I	RCCGGY	1 cut(s)	156
Bse1I	ACTGG	1 cut(s)	456
BseBI	CCWGG	1 cut(s)	481
BseDI	CCNNGG	5 cut(s)	246, 255, 256, 480, 952
BseGI	GGATG	3 cut(s)	777, 804, 889
BseLI	CCNNNNNNNGG	2 cut(s)	409, 622
BseMII	CTCAG	2 cut(s)	433, 935
BseNI	ACTGG	1 cut(s)	456
BseRI	GAGGAG	1 cut(s)	572
BseSI	GKGCMC	1 cut(s)	263
BseX3I	CGGCCG	1 cut(s)	249
BsgI	GTGCAG	1 cut(s)	650
Bsh1285I	CGRYCG	1 cut(s)	252
BshFI	GGCC	3 cut(s)	245, 251, 727
BshNI	GGYRCC	1 cut(s)	859
BshTI	ACCGGT	1 cut(s)	156
BsiEI	CGRYCG	1 cut(s)	252
BsiHKAI	GWGCWC	1 cut(s)	930
BsiHKCI	CYCGRG	1 cut(s)	256
BsiSI	CCGG	2 cut(s)	157, 257
BslI	CCNNNNNNNGG	2 cut(s)	409, 622
BsmAI	GTCTC	1 cut(s)	456
BsmBI	CGTCTC	1 cut(s)	456
BsnI	GGCC	3 cut(s)	245, 251, 727
BsoBI	CYCGRG	1 cut(s)	256
Bsp1286I	GDGCHC	4 cut(s)	263, 714, 914, 930
Bsp143I	GATC	3 cut(s)	71, 415, 670
BspACI	CCGC	8 cut(s)	223, 252, 311, 369, 424, 518, 623, 897
BspANI	GGCC	3 cut(s)	245, 251, 727
BspCNI	CTCAG	2 cut(s)	432, 936
BspLI	GGNNCC	1 cut(s)	861
BspMAI	CTGCAG	1 cut(s)	831
BspT107I	GGYRCC	1 cut(s)	859
BsrFI	RCCGGY	1 cut(s)	156
BsrI	ACTGG	1 cut(s)	456
BssAI	RCCGGY	1 cut(s)	156
BssECI	CCNNGG	5 cut(s)	246, 255, 256, 480, 952
BssMI	GATC	3 cut(s)	71, 415, 670
BssSI	CACGAG	2 cut(s)	350, 554
BssT1I	CCWWGG	1 cut(s)	952
Bst2BI	CACGAG	2 cut(s)	350, 554
Bst2UI	CCWGG	1 cut(s)	481
Bst4CI	ACNGT	3 cut(s)	751, 784, 806
Bst6I	CTCTTC	1 cut(s)	761
BstBAI	YACGTR	3 cut(s)	429, 907, 962
BstC8I	GCNNGC	3 cut(s)	139, 223, 373
BstDEI	CTNAG	5 cut(s)	62, 172, 264, 419, 944
BstDSI	CCRYGG	1 cut(s)	246
BstF5I	GGATG	3 cut(s)	777, 804, 889
BstKTI	GATC	3 cut(s)	74, 418, 673
BstMAI	GTCTC	1 cut(s)	456
BstMBI	GATC	3 cut(s)	71, 415, 670
BstMCI	CGRYCG	1 cut(s)	252
BstMWI	GCNNNNNNNGC	7 cut(s)	218, 251, 387, 432, 573, 697, 724
BstNI	CCWGG	1 cut(s)	481
BstPAI	GACNNNNGTC	1 cut(s)	822
BstSCI	CCNGG	3 cut(s)	255, 256, 479
BstSFI	CTRYAG	1 cut(s)	827
BstSLI	GKGCMC	1 cut(s)	263
BstV2I	GAAGAC	1 cut(s)	482
BstZI	CGGCCG	1 cut(s)	249
BsuI	GTATCC	2 cut(s)	753, 772
BsuRI	GGCC	3 cut(s)	245, 251, 727
BtgI	CCRYGG	1 cut(s)	246
BtgZI	GCGATG	1 cut(s)	294
BtrI	CACGTC	2 cut(s)	439, 706
BtsCI	GGATG	3 cut(s)	777, 804, 889
Cac8I	GCNNGC	3 cut(s)	139, 223, 373
Cfr10I	RCCGGY	1 cut(s)	156
Cfr13I	GGNCC	2 cut(s)	159, 725
Cfr9I	CCCGGG	1 cut(s)	256
Csp6I	GTAC	5 cut(s)	27, 293, 400, 904, 959
CspAI	ACCGGT	1 cut(s)	156
CspCI	CAANNNNNGTGG	2 cut(s)	703, 738
CviAII	CATG	3 cut(s)	409, 541, 844
CviQI	GTAC	5 cut(s)	27, 293, 400, 904, 959
DdeI	CTNAG	5 cut(s)	62, 172, 264, 419, 944
DpnI	GATC	3 cut(s)	73, 417, 672
DpnII	GATC	3 cut(s)	71, 415, 670
EaeI	YGGCCR	1 cut(s)	249
EagI	CGGCCG	1 cut(s)	249
Eam1104I	CTCTTC	1 cut(s)	761
EarI	CTCTTC	1 cut(s)	761
Ecl136II	GAGCTC	1 cut(s)	928
EclXI	CGGCCG	1 cut(s)	249
Eco130I	CCWWGG	1 cut(s)	952
Eco24I	GRGCYC	3 cut(s)	714, 914, 930
Eco47I	GGWCC	1 cut(s)	159
Eco52I	CGGCCG	1 cut(s)	249
Eco53kI	GAGCTC	1 cut(s)	928
Eco57I	CTGAAG	2 cut(s)	52, 508
Eco72I	CACGTG	1 cut(s)	429
Eco88I	CYCGRG	1 cut(s)	256
EcoICRI	GAGCTC	1 cut(s)	928
EcoRI	GAATTC	2 cut(s)	314, 362
EcoRII	CCWGG	1 cut(s)	479
EcoT14I	CCWWGG	1 cut(s)	952
EcoT38I	GRGCYC	3 cut(s)	714, 914, 930
ErhI	CCWWGG	1 cut(s)	952
Esp3I	CGTCTC	1 cut(s)	456
FaeI	CATG	3 cut(s)	412, 544, 847
FatI	CATG	3 cut(s)	408, 540, 843
FauI	CCCGC	1 cut(s)	230
Fnu4HI	GCNGC	3 cut(s)	252, 369, 424
FokI	GGATG	3 cut(s)	784, 811, 896
FriOI	GRGCYC	3 cut(s)	714, 914, 930
Fsp4HI	GCNGC	3 cut(s)	252, 369, 424
FspBI	CTAG	2 cut(s)	194, 206
GluI	GCNGC	3 cut(s)	252, 369, 424
HaeIII	GGCC	3 cut(s)	245, 251, 727
HapII	CCGG	2 cut(s)	157, 257
Hin1II	CATG	3 cut(s)	412, 544, 847
HincII	GTYRAC	1 cut(s)	682
HindII	GTYRAC	1 cut(s)	682
HinfI	GANTC	4 cut(s)	297, 550, 664, 940
HpaII	CCGG	2 cut(s)	157, 257
HphI	GGTGA	7 cut(s)	169, 226, 466, 818, 899, 935, 947
Hpy166II	GTNNAC	2 cut(s)	301, 682
Hpy188I	TCNGA	5 cut(s)	71, 385, 590, 747, 945
Hpy188III	TCNNGA	3 cut(s)	508, 554, 668
Hpy8I	GTNNAC	2 cut(s)	301, 682
Hpy99I	CGWCG	3 cut(s)	440, 751, 868
HpyAV	CCTTC	6 cut(s)	172, 415, 557, 730, 894, 913
HpyCH4III	ACNGT	3 cut(s)	751, 784, 806
HpyCH4IV	ACGT	7 cut(s)	428, 438, 651, 705, 866, 906, 961
HpyCH4V	TGCA	3 cut(s)	492, 631, 829
HpyF10VI	GCNNNNNNNGC	7 cut(s)	218, 251, 387, 432, 573, 697, 724
HpyF3I	CTNAG	5 cut(s)	62, 172, 264, 419, 944
HpySE526I	ACGT	7 cut(s)	428, 438, 651, 705, 866, 906, 961
Hsp92II	CATG	3 cut(s)	412, 544, 847
Kzo9I	GATC	3 cut(s)	71, 415, 670
LmnI	GCTCC	3 cut(s)	276, 386, 484
MaeI	CTAG	2 cut(s)	194, 206
MaeII	ACGT	7 cut(s)	428, 438, 651, 705, 866, 906, 961
MaeIII	GTNAC	3 cut(s)	175, 633, 964
MalI	GATC	3 cut(s)	73, 417, 672
MboI	GATC	3 cut(s)	71, 415, 670
MboII	GAAGA	4 cut(s)	114, 487, 559, 778
MhlI	GDGCHC	4 cut(s)	263, 714, 914, 930
MluCI	AATT	3 cut(s)	91, 314, 362
MlyI	GAGTC	1 cut(s)	306
MmeI	TCCRAC	2 cut(s)	568, 770
MseI	TTAA	1 cut(s)	756
MslI	CAYNNNNRTG	1 cut(s)	848
MspA1I	CMGCKG	1 cut(s)	822
MspI	CCGG	2 cut(s)	157, 257
MspR9I	CCNGG	3 cut(s)	257, 258, 481
MvaI	CCWGG	1 cut(s)	481
MwoI	GCNNNNNNNGC	7 cut(s)	218, 251, 387, 432, 573, 697, 724
NciI	CCSGG	2 cut(s)	257, 258
NdeII	GATC	3 cut(s)	71, 415, 670
NlaIII	CATG	3 cut(s)	412, 544, 847
NlaIV	GGNNCC	1 cut(s)	861
NmuCI	GTSAC	2 cut(s)	175, 964
PcsI	WCGNNNNNNNCGW	1 cut(s)	357
PfeI	GAWTC	3 cut(s)	550, 664, 940
PinAI	ACCGGT	1 cut(s)	156
PkrI	GCNGC	3 cut(s)	253, 370, 425
PleI	GAGTC	1 cut(s)	305
PmaCI	CACGTG	1 cut(s)	429
PmlI	CACGTG	1 cut(s)	429
PpsI	GAGTC	1 cut(s)	305
Ppu21I	YACGTR	3 cut(s)	429, 907, 962
PshAI	GACNNNNGTC	1 cut(s)	822
Psp124BI	GAGCTC	1 cut(s)	930
Psp6I	CCWGG	1 cut(s)	479
PspCI	CACGTG	1 cut(s)	429
PspGI	CCWGG	1 cut(s)	479
PspN4I	GGNNCC	1 cut(s)	861
PspPI	GGNCC	2 cut(s)	159, 725
PstI	CTGCAG	1 cut(s)	831
PvuII	CAGCTG	1 cut(s)	822
RsaI	GTAC	5 cut(s)	28, 294, 401, 905, 960
RsaNI	GTAC	5 cut(s)	27, 293, 400, 904, 959
RseI	CAYNNNNRTG	1 cut(s)	848
SacI	GAGCTC	1 cut(s)	930
SaqAI	TTAA	1 cut(s)	756
SatI	GCNGC	3 cut(s)	252, 369, 424
Sau3AI	GATC	3 cut(s)	71, 415, 670
Sau96I	GGNCC	2 cut(s)	159, 725
SchI	GAGTC	1 cut(s)	306
ScrFI	CCNGG	3 cut(s)	257, 258, 481
SduI	GDGCHC	4 cut(s)	263, 714, 914, 930
SfcI	CTRYAG	1 cut(s)	827
SinI	GGWCC	1 cut(s)	159
SmaI	CCCGGG	1 cut(s)	258
SmiMI	CAYNNNNRTG	1 cut(s)	848
SmlI	CTYRAG	2 cut(s)	713, 836
SmoI	CTYRAG	2 cut(s)	713, 836
Sse9I	AATT	3 cut(s)	91, 314, 362
SsiI	CCGC	8 cut(s)	223, 252, 311, 369, 424, 518, 623, 897
SspMI	CTAG	2 cut(s)	194, 206
SstI	GAGCTC	1 cut(s)	930
StyD4I	CCNGG	3 cut(s)	255, 256, 479
StyI	CCWWGG	1 cut(s)	952
TaaI	ACNGT	3 cut(s)	751, 784, 806
TaiI	ACGT	7 cut(s)	431, 441, 654, 708, 869, 909, 964
TaqI	TCGA	4 cut(s)	318, 360, 507, 764
TasI	AATT	3 cut(s)	91, 314, 362
TatI	WGTACW	1 cut(s)	26
TauI	GCSGC	3 cut(s)	254, 371, 426
TfiI	GAWTC	3 cut(s)	550, 664, 940
Tru1I	TTAA	1 cut(s)	756
Tru9I	TTAA	1 cut(s)	756
TseFI	GTSAC	2 cut(s)	175, 964
Tsp45I	GTSAC	2 cut(s)	175, 964
TspDTI	ATGAA	3 cut(s)	397, 815, 865
TspMI	CCCGGG	1 cut(s)	256
VpaK11BI	GGWCC	1 cut(s)	159
XapI	RAATTY	3 cut(s)	91, 314, 362
XmaI	CCCGGG	1 cut(s)	256
XspI	CTAG	2 cut(s)	194, 206

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.