Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0015274

Physical Location & Seq

Genomic Coordinates Forward (+)

47502627 .. 47506682

Gene Structure 4056 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0323900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 591 bp

ATGGCATTCAAAGGAATTGAGATGGGTCTAGCCCTGATCCTAGCAGTGACCATGCTACTGGGTCGAGCCACAGCTCAATCAAGTTGCAGTAGTACACTCACAAGCCTGTCTCCATGCCTAAATTACATTACAGGAAACTCATCAAATCCATCGTCTTCTTGCTGCTCACAGCTCTCAAATGTTGTTCAGTCATCGCCGCAATGCCTGTGCTCAGTGCTTAATAGTGCCGGTTCCACATTGGGCATCACAATAAACCAAACACTTGCTCTGTCTCTTCCTGGTGCTTGCAATGTGAAAACTCCACCCATTAACCAGTGTCAATCTGCCAATGGACCTACAACTTCTTCAGCAAGTACTCCTACAGCGAGATCTCCAGCAGATAATTCCAACAATCAAACACCCGCAGATGCAAATACACCTGAAGCTGCAATTACACCTTCAGCCTCAGATGTTCCAGCAGGAGGGTCTAAAACAGTTCCATCAACAGACGGCGACACATCCGATGGAAGCAGGAACATCAATGCACCCCTTCACTTCGTGCTCTTCCTCATTTTCGTTGTATCCTGTGCTTCAAGCATCACCAAATTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004791 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006950 GO:0006979 GO:0008150 GO:0008152 GO:0009414 GO:0009415 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009570 GO:0009628 GO:0009636 GO:0009941 GO:0009987 GO:0010035 GO:0015035 GO:0015036 GO:0016209 GO:0016491 GO:0016651 GO:0016667 GO:0016668 GO:0016671 GO:0019725 GO:0031967 GO:0031975 GO:0033554 GO:0034599 GO:0042221 GO:0042592 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0045454 GO:0047134 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0055114 GO:0065007 GO:0065008 GO:0070887 GO:0097237 GO:0098754 GO:0098869 GO:1901700 GO:1990748

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Thioredoxin

Protein Analysis

196

Amino Acids

19.75

Weight (kDa)

5.58

Isoelectric Point (pI)

54.55

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LTP_2	PF14368	12 - 106	5.8e-19	Probable lipid transfer
Tryp_alpha_amyl	PF00234	29 - 106	1.1e-12	Protease inhibitor/seed storage/LTP family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015274)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G76080
fragaria_vesca	FvH4_2g37930
malus_domestica	MD08G1007500.v1.1 MD15G1006700.v1.1
prunus_persica	Prupe.1G359300_v2.0.a1
pyrus_communis	pycom08g00610 pycom15g00530
rosa_chinensis	RchiOBHm_Chr6g0303681
rosa_laevigata	RLG00000011057
rosa_roxburghii	Rroxscaffold_7G00164490
rosa_rugosa	Rorug06G0323900
rosa_samantha	Rh6AG438200 Rh6BG464900 Rh6CG450500 Rh6DG437100
rosa_wichuraiana	Rw6G037920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	197, 402
AclWI	GGATC	1 cut(s)	31
AcsI	RAATTY	1 cut(s)	584
AcuI	CTGAAG	3 cut(s)	330, 423, 441
AdeI	CACNNNGTG	1 cut(s)	538
AfaI	GTAC	2 cut(s)	94, 355
AfiI	CCNNNNNNNGG	1 cut(s)	461
AgsI	TTSAA	2 cut(s)	10, 573
AjnI	CCWGG	1 cut(s)	277
AluBI	AGCT	3 cut(s)	74, 172, 425
AluI	AGCT	3 cut(s)	74, 172, 425
Alw21I	GWGCWC	2 cut(s)	212, 543
Alw26I	GTCTC	2 cut(s)	114, 276
AlwI	GGATC	1 cut(s)	31
ApeKI	GCWGC	2 cut(s)	162, 425
ApoI	RAATTY	1 cut(s)	584
ArsI	GACNNNNNNTTYG	2 cut(s)	137, 169
AspS9I	GGNCC	1 cut(s)	332
AsuHPI	GGTGA	1 cut(s)	571
AvaII	GGWCC	1 cut(s)	332
BbsI	GAAGAC	1 cut(s)	147
Bbv12I	GWGCWC	2 cut(s)	212, 543
BbvI	GCAGC	2 cut(s)	149, 412
BccI	CCATC	4 cut(s)	16, 157, 487, 497
BceAI	ACGGC	1 cut(s)	505
BciT130I	CCWGG	1 cut(s)	279
BciVI	GTATCC	1 cut(s)	571
BcoDI	GTCTC	2 cut(s)	114, 276
BfaI	CTAG	2 cut(s)	29, 41
BfmI	CTRYAG	1 cut(s)	360
BfuI	GTATCC	1 cut(s)	571
BglII	AGATCT	1 cut(s)	368
BisI	GCNGC	3 cut(s)	163, 197, 426
BlsI	GCNGC	3 cut(s)	164, 198, 427
BmcAI	AGTACT	1 cut(s)	355
Bme1390I	CCNGG	1 cut(s)	279
Bme18I	GGWCC	1 cut(s)	332
BmgT120I	GGNCC	1 cut(s)	332
BmiI	GGNNCC	1 cut(s)	232
BmrFI	CCNGG	1 cut(s)	279
BmrI	ACTGGG	1 cut(s)	68
BmsI	GCATC	3 cut(s)	252, 397, 585
BmuI	ACTGGG	1 cut(s)	68
BpiI	GAAGAC	1 cut(s)	147
BpmI	CTGGAG	1 cut(s)	357
Bsc4I	CCNNNNNNNGG	1 cut(s)	461
Bse118I	RCCGGY	1 cut(s)	227
Bse1I	ACTGG	2 cut(s)	63, 313
Bse3DI	GCAATG	2 cut(s)	206, 295
BseBI	CCWGG	1 cut(s)	279
BseGI	GGATG	1 cut(s)	497
BseLI	CCNNNNNNNGG	1 cut(s)	461
BseMI	GCAATG	2 cut(s)	206, 295
BseMII	CTCAG	2 cut(s)	225, 459
BseNI	ACTGG	2 cut(s)	63, 313
BseXI	GCAGC	2 cut(s)	149, 412
BsiHKAI	GWGCWC	2 cut(s)	212, 543
BsiSI	CCGG	1 cut(s)	228
BslI	CCNNNNNNNGG	1 cut(s)	461
BsmAI	GTCTC	2 cut(s)	114, 276
BsmI	GAATGC	1 cut(s)	5
Bsp1286I	GDGCHC	2 cut(s)	212, 543
Bsp143I	GATC	2 cut(s)	36, 368
BspACI	CCGC	2 cut(s)	197, 402
BspCNI	CTCAG	2 cut(s)	224, 458
BspLI	GGNNCC	1 cut(s)	232
BspPI	GGATC	1 cut(s)	31
BspQI	GCTCTTC	1 cut(s)	548
BsrDI	GCAATG	2 cut(s)	206, 295
BsrFI	RCCGGY	1 cut(s)	227
BsrI	ACTGG	2 cut(s)	63, 313
BssAI	RCCGGY	1 cut(s)	227
BssMI	GATC	2 cut(s)	36, 368
Bst2UI	CCWGG	1 cut(s)	279
Bst4CI	ACNGT	1 cut(s)	475
Bst6I	CTCTTC	2 cut(s)	279, 548
BstC8I	GCNNGC	1 cut(s)	286
BstDEI	CTNAG	2 cut(s)	211, 445
BstF5I	GGATG	1 cut(s)	497
BstKTI	GATC	2 cut(s)	39, 371
BstMAI	GTCTC	2 cut(s)	114, 276
BstMBI	GATC	2 cut(s)	36, 368
BstNI	CCWGG	1 cut(s)	279
BstSCI	CCNGG	1 cut(s)	277
BstSFI	CTRYAG	1 cut(s)	360
BstV1I	GCAGC	2 cut(s)	149, 412
BstV2I	GAAGAC	1 cut(s)	147
BstX2I	RGATCY	1 cut(s)	368
BstXI	CCANNNNNNTGG	1 cut(s)	58
BstYI	RGATCY	1 cut(s)	368
BsuI	GTATCC	1 cut(s)	571
BtgZI	GCGATG	1 cut(s)	177
BtsCI	GGATG	1 cut(s)	497
BtsI	GCAGTG	1 cut(s)	51
BtsIMutI	CAGTG	3 cut(s)	51, 219, 320
Cac8I	GCNNGC	1 cut(s)	286
Cfr10I	RCCGGY	1 cut(s)	227
Cfr13I	GGNCC	1 cut(s)	332
Csp6I	GTAC	2 cut(s)	93, 354
CviAII	CATG	2 cut(s)	52, 114
CviJI	RGCY	7 cut(s)	32, 68, 74, 105, 172, 425, 443
CviKI_1	RGCY	7 cut(s)	32, 68, 74, 105, 172, 425, 443
CviQI	GTAC	2 cut(s)	93, 354
DdeI	CTNAG	2 cut(s)	211, 445
DpnI	GATC	2 cut(s)	38, 370
DpnII	GATC	2 cut(s)	36, 368
DraIII	CACNNNGTG	1 cut(s)	538
Eam1104I	CTCTTC	2 cut(s)	279, 548
EarI	CTCTTC	2 cut(s)	279, 548
Eco47I	GGWCC	1 cut(s)	332
Eco57I	CTGAAG	3 cut(s)	330, 423, 441
EcoRII	CCWGG	1 cut(s)	277
FaeI	CATG	2 cut(s)	55, 117
FaiI	YATR	2 cut(s)	53, 115
FatI	CATG	2 cut(s)	51, 113
FauI	CCCGC	1 cut(s)	409
Fnu4HI	GCNGC	3 cut(s)	163, 197, 426
FokI	GGATG	1 cut(s)	484
Fsp4HI	GCNGC	3 cut(s)	163, 197, 426
FspBI	CTAG	2 cut(s)	29, 41
GluI	GCNGC	3 cut(s)	163, 197, 426
GsuI	CTGGAG	1 cut(s)	357
HapII	CCGG	1 cut(s)	228
Hin1II	CATG	2 cut(s)	55, 117
HpaII	CCGG	1 cut(s)	228
HphI	GGTGA	1 cut(s)	571
Hpy166II	GTNNAC	1 cut(s)	95
Hpy188I	TCNGA	2 cut(s)	448, 502
Hpy8I	GTNNAC	1 cut(s)	95
HpyAV	CCTTC	2 cut(s)	447, 539
HpyCH4III	ACNGT	1 cut(s)	475
HpyCH4V	TGCA	5 cut(s)	87, 288, 410, 428, 524
HpyF3I	CTNAG	2 cut(s)	211, 445
Hsp92II	CATG	2 cut(s)	55, 117
Kzo9I	GATC	2 cut(s)	36, 368
LguI	GCTCTTC	1 cut(s)	548
Lsp1109I	GCAGC	2 cut(s)	149, 412
LweI	GCATC	3 cut(s)	252, 397, 585
MaeI	CTAG	2 cut(s)	29, 41
MaeIII	GTNAC	1 cut(s)	46
MalI	GATC	2 cut(s)	38, 370
MboI	GATC	2 cut(s)	36, 368
MboII	GAAGA	4 cut(s)	147, 266, 336, 535
MflI	RGATCY	1 cut(s)	368
MhlI	GDGCHC	2 cut(s)	212, 543
MluCI	AATT	5 cut(s)	15, 121, 382, 429, 584
MmeI	TCCRAC	1 cut(s)	411
MnlI	CCTC	3 cut(s)	454, 455, 557
MseI	TTAA	2 cut(s)	219, 309
MspI	CCGG	1 cut(s)	228
MspR9I	CCNGG	1 cut(s)	279
Mva1269I	GAATGC	1 cut(s)	5
MvaI	CCWGG	1 cut(s)	279
NdeII	GATC	2 cut(s)	36, 368
NlaIII	CATG	2 cut(s)	55, 117
NlaIV	GGNNCC	1 cut(s)	232
NmuCI	GTSAC	1 cut(s)	46
PciSI	GCTCTTC	1 cut(s)	548
PctI	GAATGC	1 cut(s)	5
PkrI	GCNGC	3 cut(s)	164, 198, 427
Psp6I	CCWGG	1 cut(s)	277
PspGI	CCWGG	1 cut(s)	277
PspN4I	GGNNCC	1 cut(s)	232
PspPI	GGNCC	1 cut(s)	332
PsuI	RGATCY	1 cut(s)	368
RsaI	GTAC	2 cut(s)	94, 355
RsaNI	GTAC	2 cut(s)	93, 354
SapI	GCTCTTC	1 cut(s)	548
SaqAI	TTAA	2 cut(s)	219, 309
SatI	GCNGC	3 cut(s)	163, 197, 426
Sau3AI	GATC	2 cut(s)	36, 368
Sau96I	GGNCC	1 cut(s)	332
ScaI	AGTACT	1 cut(s)	355
ScrFI	CCNGG	1 cut(s)	279
SduI	GDGCHC	2 cut(s)	212, 543
SetI	ASST	6 cut(s)	76, 174, 337, 421, 427, 439
SfaNI	GCATC	3 cut(s)	252, 397, 585
SfcI	CTRYAG	1 cut(s)	360
SinI	GGWCC	1 cut(s)	332
Sse9I	AATT	5 cut(s)	15, 121, 382, 429, 584
SsiI	CCGC	2 cut(s)	197, 402
SspMI	CTAG	2 cut(s)	29, 41
StyD4I	CCNGG	1 cut(s)	277
TaaI	ACNGT	1 cut(s)	475
TaqI	TCGA	1 cut(s)	64
TasI	AATT	5 cut(s)	15, 121, 382, 429, 584
TatI	WGTACW	2 cut(s)	92, 353
TauI	GCSGC	1 cut(s)	199
Tru1I	TTAA	2 cut(s)	219, 309
Tru9I	TTAA	2 cut(s)	219, 309
TscAI	CASTG	3 cut(s)	51, 219, 320
TseFI	GTSAC	1 cut(s)	46
TseI	GCWGC	2 cut(s)	162, 425
Tsp45I	GTSAC	1 cut(s)	46
TspRI	CASTG	3 cut(s)	51, 219, 320
VpaK11BI	GGWCC	1 cut(s)	332
XapI	RAATTY	1 cut(s)	584
XspI	CTAG	2 cut(s)	29, 41
ZrmI	AGTACT	1 cut(s)	355

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.