Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0016651

Physical Location & Seq

Genomic Coordinates Forward (+)

28593211 .. 28594750

Gene Structure 1540 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G76200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 210 bp

ATGGGTGGAGGAGGACATGGCGGAGGTATAACTTACAAGGGAGTCACTGTCCACACTCCCAAGACTTGGCACACCGTCACCGGAAAAGGCTTGTGCGCCGTTATGTGGTTCTGGATTCTGTACAGGGCAAAGCAAGATGGTCCTGTAGTTATGGGATGGAGGCACCCTTGGGATGGTCATGGTGATCACGGTCACGGAGATCATCACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0005746 GO:0005747 GO:0016020 GO:0019866 GO:0030964 GO:0031090 GO:0031966 GO:0031967 GO:0031975 GO:0032991 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044455 GO:0044464 GO:0045271 GO:0070469 GO:0098796 GO:0098798 GO:0098800 GO:0098803 GO:1902494 GO:1990204

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

69

Amino Acids

7.57

Weight (kDa)

8.98

Isoelectric Point (pI)

16.33

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0016651)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G76200
fragaria_vesca	FvH4_2g37630
malus_domestica	MD08G1003800.v1.1 MD15G1003400.v1.1
prunus_persica	Prupe.1G355800_v2.0.a1 Prupe.1G355800_v2.0.a1
pyrus_communis	pycom08g00290
rosa_chinensis	RchiOBHm_Chr6g0304101
rosa_roxburghii	Rroxscaffold_7G00164070
rosa_rugosa	Rorug06G0327600
rosa_samantha	Rh6BG461200 Rh6CG453800 Rh6DG441000
rosa_wichuraiana	Rw6G038270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	162
AccB7I	CCANNNNNTGG	1 cut(s)	66
AciI	CCGC	1 cut(s)	21
AfaI	GTAC	1 cut(s)	122
AfiI	CCNNNNNNNGG	3 cut(s)	66, 105, 173
AspLEI	GCGC	1 cut(s)	98
AspS9I	GGNCC	1 cut(s)	140
AsuHPI	GGTGA	2 cut(s)	70, 194
AvaII	GGWCC	1 cut(s)	140
BanI	GGYRCC	1 cut(s)	162
BccI	CCATC	3 cut(s)	131, 150, 167
BceAI	ACGGC	1 cut(s)	83
BclI	TGATCA	1 cut(s)	184
BfaI	CTAG	1 cut(s)	208
BfmI	CTRYAG	1 cut(s)	144
Bme18I	GGWCC	1 cut(s)	140
BmgT120I	GGNCC	1 cut(s)	140
BmiI	GGNNCC	1 cut(s)	164
BsaJI	CCNNGG	1 cut(s)	167
BsaWI	WCCGGW	1 cut(s)	80
BsaXI	ACNNNNNCTCC	2 cut(s)	33, 63
Bsc4I	CCNNNNNNNGG	3 cut(s)	66, 105, 173
BseDI	CCNNGG	1 cut(s)	167
BseGI	GGATG	2 cut(s)	161, 178
BseLI	CCNNNNNNNGG	3 cut(s)	66, 105, 173
BseRI	GAGGAG	1 cut(s)	24
BshNI	GGYRCC	1 cut(s)	162
BsiSI	CCGG	1 cut(s)	81
BslI	CCNNNNNNNGG	3 cut(s)	66, 105, 173
Bsp1407I	TGTACA	1 cut(s)	120
Bsp143I	GATC	2 cut(s)	184, 199
BspACI	CCGC	1 cut(s)	21
BspLI	GGNNCC	1 cut(s)	164
BspT107I	GGYRCC	1 cut(s)	162
BsrGI	TGTACA	1 cut(s)	120
BssECI	CCNNGG	1 cut(s)	167
BssMI	GATC	2 cut(s)	184, 199
BssT1I	CCWWGG	1 cut(s)	167
Bst4CI	ACNGT	3 cut(s)	49, 76, 191
BstAUI	TGTACA	1 cut(s)	120
BstF5I	GGATG	2 cut(s)	161, 178
BstHHI	GCGC	1 cut(s)	98
BstKTI	GATC	2 cut(s)	187, 202
BstMBI	GATC	2 cut(s)	184, 199
BstSFI	CTRYAG	1 cut(s)	144
BtsCI	GGATG	2 cut(s)	161, 178
BtsIMutI	CAGTG	1 cut(s)	45
CfoI	GCGC	1 cut(s)	98
Cfr13I	GGNCC	1 cut(s)	140
Csp6I	GTAC	1 cut(s)	121
CviAII	CATG	2 cut(s)	17, 179
CviJI	RGCY	1 cut(s)	90
CviKI_1	RGCY	1 cut(s)	90
CviQI	GTAC	1 cut(s)	121
DpnI	GATC	2 cut(s)	186, 201
DpnII	GATC	2 cut(s)	184, 199
EciI	GGCGGA	1 cut(s)	36
Eco130I	CCWWGG	1 cut(s)	167
Eco47I	GGWCC	1 cut(s)	140
EcoT14I	CCWWGG	1 cut(s)	167
ErhI	CCWWGG	1 cut(s)	167
FaeI	CATG	2 cut(s)	20, 182
FaiI	YATR	5 cut(s)	18, 29, 104, 152, 180
FatI	CATG	2 cut(s)	16, 178
FbaI	TGATCA	1 cut(s)	184
FokI	GGATG	2 cut(s)	168, 185
FspBI	CTAG	1 cut(s)	208
GlaI	GCGC	1 cut(s)	97
HapII	CCGG	1 cut(s)	81
HhaI	GCGC	1 cut(s)	98
Hin1II	CATG	2 cut(s)	20, 182
Hin6I	GCGC	1 cut(s)	96
HinP1I	GCGC	1 cut(s)	96
HinfI	GANTC	2 cut(s)	42, 115
HpaII	CCGG	1 cut(s)	81
HphI	GGTGA	2 cut(s)	70, 194
Hpy166II	GTNNAC	1 cut(s)	52
Hpy188III	TCNNGA	1 cut(s)	112
Hpy8I	GTNNAC	1 cut(s)	52
HpyCH4III	ACNGT	3 cut(s)	49, 76, 191
Hsp92II	CATG	2 cut(s)	20, 182
HspAI	GCGC	1 cut(s)	96
Ksp22I	TGATCA	1 cut(s)	184
Kzo9I	GATC	2 cut(s)	184, 199
LpnPI	CCDG	4 cut(s)	94, 97, 109, 156
MaeI	CTAG	1 cut(s)	208
MaeIII	GTNAC	3 cut(s)	43, 76, 191
MalI	GATC	2 cut(s)	186, 201
MboI	GATC	2 cut(s)	184, 199
MlyI	GAGTC	1 cut(s)	51
MnlI	CCTC	3 cut(s)	5, 17, 153
MspI	CCGG	1 cut(s)	81
NdeII	GATC	2 cut(s)	184, 199
NlaIII	CATG	2 cut(s)	20, 182
NlaIV	GGNNCC	1 cut(s)	164
NmuCI	GTSAC	3 cut(s)	43, 76, 191
PfeI	GAWTC	1 cut(s)	115
PflMI	CCANNNNNTGG	1 cut(s)	66
PleI	GAGTC	1 cut(s)	50
PpsI	GAGTC	1 cut(s)	50
PspN4I	GGNNCC	1 cut(s)	164
PspPI	GGNCC	1 cut(s)	140
RsaI	GTAC	1 cut(s)	122
RsaNI	GTAC	1 cut(s)	121
Sau3AI	GATC	2 cut(s)	184, 199
Sau96I	GGNCC	1 cut(s)	140
SchI	GAGTC	1 cut(s)	51
SetI	ASST	1 cut(s)	28
SfcI	CTRYAG	1 cut(s)	144
SinI	GGWCC	1 cut(s)	140
SsiI	CCGC	1 cut(s)	21
SspMI	CTAG	1 cut(s)	208
StyI	CCWWGG	1 cut(s)	167
TaaI	ACNGT	3 cut(s)	49, 76, 191
TatI	WGTACW	1 cut(s)	120
TfiI	GAWTC	1 cut(s)	115
TscAI	CASTG	1 cut(s)	52
TseFI	GTSAC	3 cut(s)	43, 76, 191
Tsp45I	GTSAC	3 cut(s)	43, 76, 191
TspGWI	ACGGA	1 cut(s)	210
TspRI	CASTG	1 cut(s)	52
Van91I	CCANNNNNTGG	1 cut(s)	66
VpaK11BI	GGWCC	1 cut(s)	140
XspI	CTAG	1 cut(s)	208

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.