Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6D

Orthogroup ID

OG0016651

Physical Location & Seq

Genomic Coordinates Forward (+)

61706762 .. 61708769

Gene Structure 2008 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6DG441000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 360 bp

ATGGGAGGAGGACATGGAGATGGCATAACGTACAAGGGCGTTACCATCCATCAGCCGAAGCGGTGGCACACTGTCACCGGAAAAGGCCTTTGCGCCGTCATGTGGTTTTGGGTACTTTACAGGGCCAAGCAAGATGGTCCTGTAGTGCTGGTAAGACCTTCTCTTTGTTTCACTTATCGTTGTTATGTGATATATGCATGGACTGACTTTCATATTGTGTTTTTTAGGGTTGGAGACATCCCTGGGAGGGCCATGATGATCATGGTCATGGGCATGATGAACATCATTAGATCTCTTGTTGAAGAACCAAGAGTGGAAATCATCAAGGGATTTATTGTTGGGAGACTGGTGCAAATGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0005746 GO:0005747 GO:0016020 GO:0019866 GO:0030964 GO:0031090 GO:0031966 GO:0031967 GO:0031975 GO:0032991 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044455 GO:0044464 GO:0045271 GO:0070469 GO:0098796 GO:0098798 GO:0098800 GO:0098803 GO:1902494 GO:1990204

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

119

Amino Acids

13.65

Weight (kDa)

9.72

Isoelectric Point (pI)

34.1

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0016651)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G76200
fragaria_vesca	FvH4_2g37630
malus_domestica	MD08G1003800.v1.1 MD15G1003400.v1.1
prunus_persica	Prupe.1G355800_v2.0.a1 Prupe.1G355800_v2.0.a1
pyrus_communis	pycom08g00290
rosa_chinensis	RchiOBHm_Chr6g0304101
rosa_roxburghii	Rroxscaffold_7G00164070
rosa_rugosa	Rorug06G0327600
rosa_samantha	Rh6BG461200 Rh6CG453800 Rh6DG441000
rosa_wichuraiana	Rw6G038270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	61
AfaI	GTAC	2 cut(s)	32, 114
AfiI	CCNNNNNNNGG	2 cut(s)	102, 247
AgsI	TTSAA	1 cut(s)	302
AjnI	CCWGG	1 cut(s)	241
Alw26I	GTCTC	2 cut(s)	228, 337
AoxI	GGCC	3 cut(s)	85, 123, 249
ArsI	GACNNNNNNTTYG	2 cut(s)	147, 179
AspLEI	GCGC	1 cut(s)	95
AspS9I	GGNCC	3 cut(s)	123, 137, 249
AsuHPI	GGTGA	1 cut(s)	67
AvaII	GGWCC	1 cut(s)	137
BccI	CCATC	4 cut(s)	14, 53, 57, 128
BceAI	ACGGC	1 cut(s)	80
BciT130I	CCWGG	1 cut(s)	243
BclI	TGATCA	1 cut(s)	258
BcoDI	GTCTC	2 cut(s)	228, 337
BfmI	CTRYAG	1 cut(s)	141
BglII	AGATCT	1 cut(s)	290
Bme1390I	CCNGG	1 cut(s)	243
Bme18I	GGWCC	1 cut(s)	137
BmgT120I	GGNCC	3 cut(s)	123, 137, 249
BmrFI	CCNGG	1 cut(s)	243
BsaBI	GATNNNNATC	1 cut(s)	281
BsaJI	CCNNGG	2 cut(s)	241, 242
BsaWI	WCCGGW	1 cut(s)	77
Bsc4I	CCNNNNNNNGG	2 cut(s)	102, 247
Bse1I	ACTGG	1 cut(s)	351
Bse8I	GATNNNNATC	1 cut(s)	281
BseBI	CCWGG	1 cut(s)	243
BseDI	CCNNGG	2 cut(s)	241, 242
BseGI	GGATG	2 cut(s)	45, 237
BseJI	GATNNNNATC	1 cut(s)	281
BseLI	CCNNNNNNNGG	2 cut(s)	102, 247
BseNI	ACTGG	1 cut(s)	351
BseRI	GAGGAG	1 cut(s)	21
BshFI	GGCC	3 cut(s)	87, 125, 251
BsiSI	CCGG	1 cut(s)	78
BslI	CCNNNNNNNGG	2 cut(s)	102, 247
BsmAI	GTCTC	2 cut(s)	228, 337
BsnI	GGCC	3 cut(s)	87, 125, 251
Bsp143I	GATC	2 cut(s)	258, 290
BspACI	CCGC	1 cut(s)	61
BspANI	GGCC	3 cut(s)	87, 125, 251
BsrI	ACTGG	1 cut(s)	351
BssECI	CCNNGG	2 cut(s)	241, 242
BssMI	GATC	2 cut(s)	258, 290
Bst2UI	CCWGG	1 cut(s)	243
Bst4CI	ACNGT	1 cut(s)	73
BstF5I	GGATG	2 cut(s)	45, 237
BstHHI	GCGC	1 cut(s)	95
BstKTI	GATC	2 cut(s)	261, 293
BstMAI	GTCTC	2 cut(s)	228, 337
BstMBI	GATC	2 cut(s)	258, 290
BstNI	CCWGG	1 cut(s)	243
BstSCI	CCNGG	1 cut(s)	241
BstSFI	CTRYAG	1 cut(s)	141
BstX2I	RGATCY	1 cut(s)	290
BstYI	RGATCY	1 cut(s)	290
BsuRI	GGCC	3 cut(s)	87, 125, 251
BtsCI	GGATG	2 cut(s)	45, 237
BtsIMutI	CAGTG	1 cut(s)	69
CfoI	GCGC	1 cut(s)	95
Cfr13I	GGNCC	3 cut(s)	123, 137, 249
Csp6I	GTAC	2 cut(s)	31, 113
CviAII	CATG	7 cut(s)	14, 100, 198, 253, 262, 268, 274
CviJI	RGCY	4 cut(s)	55, 87, 125, 251
CviKI_1	RGCY	4 cut(s)	55, 87, 125, 251
CviQI	GTAC	2 cut(s)	31, 113
DpnI	GATC	2 cut(s)	260, 292
DpnII	GATC	2 cut(s)	258, 290
Eco147I	AGGCCT	1 cut(s)	87
Eco47I	GGWCC	1 cut(s)	137
EcoRII	CCWGG	1 cut(s)	241
EcoT22I	ATGCAT	1 cut(s)	199
FaeI	CATG	7 cut(s)	17, 103, 201, 256, 265, 271, 277
FatI	CATG	7 cut(s)	13, 99, 197, 252, 261, 267, 273
FbaI	TGATCA	1 cut(s)	258
FokI	GGATG	2 cut(s)	32, 224
GlaI	GCGC	1 cut(s)	94
HaeIII	GGCC	3 cut(s)	87, 125, 251
HapII	CCGG	1 cut(s)	78
HhaI	GCGC	1 cut(s)	95
Hin1II	CATG	7 cut(s)	17, 103, 201, 256, 265, 271, 277
Hin6I	GCGC	1 cut(s)	93
HinP1I	GCGC	1 cut(s)	93
HpaII	CCGG	1 cut(s)	78
HphI	GGTGA	1 cut(s)	67
HpyAV	CCTTC	1 cut(s)	168
HpyCH4III	ACNGT	1 cut(s)	73
HpyCH4IV	ACGT	1 cut(s)	29
HpyCH4V	TGCA	2 cut(s)	197, 352
HpySE526I	ACGT	1 cut(s)	29
Hsp92II	CATG	7 cut(s)	17, 103, 201, 256, 265, 271, 277
HspAI	GCGC	1 cut(s)	93
Ksp22I	TGATCA	1 cut(s)	258
Kzo9I	GATC	2 cut(s)	258, 290
LpnPI	CCDG	7 cut(s)	91, 106, 134, 153, 228, 255, 332
MaeII	ACGT	1 cut(s)	29
MaeIII	GTNAC	2 cut(s)	40, 73
MalI	GATC	2 cut(s)	260, 292
MboI	GATC	2 cut(s)	258, 290
MboII	GAAGA	1 cut(s)	314
MflI	RGATCY	1 cut(s)	290
MmeI	TCCRAC	1 cut(s)	211
MnlI	CCTC	1 cut(s)	240
Mph1103I	ATGCAT	1 cut(s)	199
MslI	CAYNNNNRTG	3 cut(s)	18, 266, 272
MspI	CCGG	1 cut(s)	78
MspR9I	CCNGG	1 cut(s)	243
MvaI	CCWGG	1 cut(s)	243
NdeII	GATC	2 cut(s)	258, 290
NlaIII	CATG	7 cut(s)	17, 103, 201, 256, 265, 271, 277
NmuCI	GTSAC	1 cut(s)	73
NsiI	ATGCAT	1 cut(s)	199
PasI	CCCWGGG	1 cut(s)	242
PceI	AGGCCT	1 cut(s)	87
Psp6I	CCWGG	1 cut(s)	241
PspGI	CCWGG	1 cut(s)	241
PspPI	GGNCC	3 cut(s)	123, 137, 249
PsuI	RGATCY	1 cut(s)	290
RsaI	GTAC	2 cut(s)	32, 114
RsaNI	GTAC	2 cut(s)	31, 113
RseI	CAYNNNNRTG	3 cut(s)	18, 266, 272
Sau3AI	GATC	2 cut(s)	258, 290
Sau96I	GGNCC	3 cut(s)	123, 137, 249
ScrFI	CCNGG	1 cut(s)	243
SetI	ASST	2 cut(s)	32, 160
SfcI	CTRYAG	1 cut(s)	141
SinI	GGWCC	1 cut(s)	137
SmiMI	CAYNNNNRTG	3 cut(s)	18, 266, 272
SseBI	AGGCCT	1 cut(s)	87
SsiI	CCGC	1 cut(s)	61
StuI	AGGCCT	1 cut(s)	87
StyD4I	CCNGG	1 cut(s)	241
TaaI	ACNGT	1 cut(s)	73
TaiI	ACGT	1 cut(s)	32
TscAI	CASTG	1 cut(s)	76
TseFI	GTSAC	1 cut(s)	73
Tsp45I	GTSAC	1 cut(s)	73
TspDTI	ATGAA	2 cut(s)	200, 293
TspRI	CASTG	1 cut(s)	76
VpaK11BI	GGWCC	1 cut(s)	137
XcmI	CCANNNNNNNNNTGG	1 cut(s)	259
Zsp2I	ATGCAT	1 cut(s)	199

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.