pycom08g00290

No description available

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr8
Physical Location & Seq
Reverse (-)
295427 .. 295837
411 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom08g00290.1

Sequence Viewer

Length: 183 bp
ATGGGAGGAGGACACGGAGAGGGCATAACATACAAGGGAATCACGGTGCATCAGCCAAAGCGGTGGCACACCCTCACCGGCAAGGGCATGTGTGCTGTGATGTGTTGGGGATTCAGGCAGCTCAATACGTGTAGGGGTCGATTGGTTAGGAACTTAGACATGATGAATTTAGAATTCTCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

61

Amino Acids

6.78

Weight (kDa)

9.75

Isoelectric Point (pI)

27.53

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0016651)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G76200
fragaria_vesca FvH4_2g37630
malus_domestica MD08G1003800.v1.1 MD15G1003400.v1.1
prunus_persica Prupe.1G355800_v2.0.a1 Prupe.1G355800_v2.0.a1
pyrus_communis pycom08g00290
rosa_chinensis RchiOBHm_Chr6g0304101
rosa_roxburghii Rroxscaffold_7G00164070
rosa_rugosa Rorug06G0327600
rosa_samantha Rh6BG461200 Rh6CG453800 Rh6DG441000
rosa_wichuraiana Rw6G038270

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 61
AcsI RAATTY 2 cut(s) 166, 173
AflIII ACRYGT 1 cut(s) 128
AluBI AGCT 1 cut(s) 121
AluI AGCT 1 cut(s) 121
ApeKI GCWGC 1 cut(s) 118
ApoI RAATTY 2 cut(s) 166, 173
AsuHPI GGTGA 1 cut(s) 67
BbvI GCAGC 1 cut(s) 130
BisI GCNGC 1 cut(s) 119
BlsI GCNGC 1 cut(s) 120
BmsI GCATC 1 cut(s) 58
BsaAI YACGTR 1 cut(s) 129
Bse118I RCCGGY 1 cut(s) 77
BseRI GAGGAG 1 cut(s) 21
BseXI GCAGC 1 cut(s) 130
BsiSI CCGG 1 cut(s) 78
BspACI CCGC 1 cut(s) 61
BsrFI RCCGGY 1 cut(s) 77
BssAI RCCGGY 1 cut(s) 77
Bst4CI ACNGT 1 cut(s) 46
BstBAI YACGTR 1 cut(s) 129
BstDEI CTNAG 1 cut(s) 154
BstNSI RCATGY 1 cut(s) 91
BstV1I GCAGC 1 cut(s) 130
BstXI CCANNNNNNTGG 1 cut(s) 63
Cfr10I RCCGGY 1 cut(s) 77
CviAII CATG 2 cut(s) 88, 160
CviJI RGCY 2 cut(s) 55, 121
CviKI_1 RGCY 2 cut(s) 55, 121
DdeI CTNAG 1 cut(s) 154
EcoRI GAATTC 1 cut(s) 173
FaeI CATG 2 cut(s) 91, 163
FaiI YATR 4 cut(s) 26, 31, 89, 161
FatI CATG 2 cut(s) 87, 159
Fnu4HI GCNGC 1 cut(s) 119
Fsp4HI GCNGC 1 cut(s) 119
GluI GCNGC 1 cut(s) 119
HapII CCGG 1 cut(s) 78
Hin1II CATG 2 cut(s) 91, 163
HinfI GANTC 2 cut(s) 39, 111
HpaII CCGG 1 cut(s) 78
HphI GGTGA 1 cut(s) 67
HpyCH4III ACNGT 1 cut(s) 46
HpyCH4IV ACGT 1 cut(s) 128
HpyCH4V TGCA 1 cut(s) 49
HpyF3I CTNAG 1 cut(s) 154
HpySE526I ACGT 1 cut(s) 128
Hsp92II CATG 2 cut(s) 91, 163
LpnPI CCDG 2 cut(s) 91, 100
Lsp1109I GCAGC 1 cut(s) 130
LweI GCATC 1 cut(s) 58
MaeII ACGT 1 cut(s) 128
MluCI AATT 2 cut(s) 166, 173
MnlI CCTC 2 cut(s) 13, 83
MseI TTAA 1 cut(s) 181
MspI CCGG 1 cut(s) 78
NlaIII CATG 2 cut(s) 91, 163
NspI RCATGY 1 cut(s) 91
PfeI GAWTC 2 cut(s) 39, 111
PkrI GCNGC 1 cut(s) 120
Ppu21I YACGTR 1 cut(s) 129
SaqAI TTAA 1 cut(s) 181
SatI GCNGC 1 cut(s) 119
SetI ASST 2 cut(s) 123, 131
SfaNI GCATC 1 cut(s) 58
SgeI CNNG 9 cut(s) 26, 46, 55, 90, 94, 100, 127, 141, 172
Sse9I AATT 2 cut(s) 166, 173
SsiI CCGC 1 cut(s) 61
TaaI ACNGT 1 cut(s) 46
TaiI ACGT 1 cut(s) 131
TaqI TCGA 1 cut(s) 139
TasI AATT 2 cut(s) 166, 173
TfiI GAWTC 2 cut(s) 39, 111
Tru1I TTAA 1 cut(s) 181
Tru9I TTAA 1 cut(s) 181
TseI GCWGC 1 cut(s) 118
TspDTI ATGAA 1 cut(s) 179
TspGWI ACGGA 1 cut(s) 30
XapI RAATTY 2 cut(s) 166, 173
XceI RCATGY 1 cut(s) 91
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.