RchiOBHm_Chr6g0304101

NADH dehydrogenase ubiquinone 1 beta subcomplex subunit 2

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
Physical Location & Seq
Forward (+)
63541368 .. 63543327
1960 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ27320

Sequence Viewer

Length: 171 bp
ATGGGAGGAGGACATGGAGATGGCATAACGTACAAGGGCGTTACCATCCATCAGCCGAAGCGGTGGCACAGTGTCACCGGAAAAGGCCTTTGCGCCGTCATGTGGTTTTGGGTACTTTACAGGGCCAAGCAAGATGGTCCTGTAGTGCTGACATCCCTGGGAGGGCCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

56

Amino Acids

6.05

Weight (kDa)

9.74

Isoelectric Point (pI)

36.45

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0016651)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G76200
fragaria_vesca FvH4_2g37630
malus_domestica MD08G1003800.v1.1 MD15G1003400.v1.1
prunus_persica Prupe.1G355800_v2.0.a1 Prupe.1G355800_v2.0.a1
pyrus_communis pycom08g00290
rosa_chinensis RchiOBHm_Chr6g0304101
rosa_roxburghii Rroxscaffold_7G00164070
rosa_rugosa Rorug06G0327600
rosa_samantha Rh6BG461200 Rh6CG453800 Rh6DG441000
rosa_wichuraiana Rw6G038270

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 61
AfaI GTAC 2 cut(s) 32, 114
AfiI CCNNNNNNNGG 2 cut(s) 102, 162
AjnI CCWGG 1 cut(s) 156
AoxI GGCC 3 cut(s) 85, 123, 164
AspLEI GCGC 1 cut(s) 95
AspS9I GGNCC 3 cut(s) 123, 137, 164
AsuHPI GGTGA 1 cut(s) 67
AvaII GGWCC 1 cut(s) 137
BccI CCATC 4 cut(s) 14, 53, 57, 128
BceAI ACGGC 1 cut(s) 80
BciT130I CCWGG 1 cut(s) 158
BfmI CTRYAG 1 cut(s) 141
Bme1390I CCNGG 1 cut(s) 158
Bme18I GGWCC 1 cut(s) 137
BmgT120I GGNCC 3 cut(s) 123, 137, 164
BmrFI CCNGG 1 cut(s) 158
BsaJI CCNNGG 2 cut(s) 156, 157
BsaWI WCCGGW 1 cut(s) 77
Bsc4I CCNNNNNNNGG 2 cut(s) 102, 162
BseBI CCWGG 1 cut(s) 158
BseDI CCNNGG 2 cut(s) 156, 157
BseGI GGATG 2 cut(s) 45, 152
BseLI CCNNNNNNNGG 2 cut(s) 102, 162
BseRI GAGGAG 1 cut(s) 21
BshFI GGCC 3 cut(s) 87, 125, 166
BsiSI CCGG 1 cut(s) 78
BslI CCNNNNNNNGG 2 cut(s) 102, 162
BsnI GGCC 3 cut(s) 87, 125, 166
BspACI CCGC 1 cut(s) 61
BspANI GGCC 3 cut(s) 87, 125, 166
BssECI CCNNGG 2 cut(s) 156, 157
Bst2UI CCWGG 1 cut(s) 158
Bst4CI ACNGT 1 cut(s) 71
BstF5I GGATG 2 cut(s) 45, 152
BstHHI GCGC 1 cut(s) 95
BstNI CCWGG 1 cut(s) 158
BstSCI CCNGG 1 cut(s) 156
BstSFI CTRYAG 1 cut(s) 141
BsuRI GGCC 3 cut(s) 87, 125, 166
BtsCI GGATG 2 cut(s) 45, 152
BtsIMutI CAGTG 1 cut(s) 76
CfoI GCGC 1 cut(s) 95
Cfr13I GGNCC 3 cut(s) 123, 137, 164
Csp6I GTAC 2 cut(s) 31, 113
CviAII CATG 3 cut(s) 14, 100, 168
CviJI RGCY 4 cut(s) 55, 87, 125, 166
CviKI_1 RGCY 4 cut(s) 55, 87, 125, 166
CviQI GTAC 2 cut(s) 31, 113
Eco147I AGGCCT 1 cut(s) 87
Eco47I GGWCC 1 cut(s) 137
EcoRII CCWGG 1 cut(s) 156
FaeI CATG 3 cut(s) 17, 103, 171
FaiI YATR 4 cut(s) 15, 26, 101, 169
FatI CATG 3 cut(s) 13, 99, 167
FokI GGATG 2 cut(s) 32, 139
GlaI GCGC 1 cut(s) 94
HaeIII GGCC 3 cut(s) 87, 125, 166
HapII CCGG 1 cut(s) 78
HhaI GCGC 1 cut(s) 95
Hin1II CATG 3 cut(s) 17, 103, 171
Hin6I GCGC 1 cut(s) 93
HinP1I GCGC 1 cut(s) 93
HpaII CCGG 1 cut(s) 78
HphI GGTGA 1 cut(s) 67
HpyCH4III ACNGT 1 cut(s) 71
HpyCH4IV ACGT 1 cut(s) 29
HpySE526I ACGT 1 cut(s) 29
Hsp92II CATG 3 cut(s) 17, 103, 171
HspAI GCGC 1 cut(s) 93
LpnPI CCDG 4 cut(s) 91, 106, 143, 153
MaeII ACGT 1 cut(s) 29
MaeIII GTNAC 2 cut(s) 40, 73
MnlI CCTC 1 cut(s) 155
MslI CAYNNNNRTG 1 cut(s) 18
MspI CCGG 1 cut(s) 78
MspR9I CCNGG 1 cut(s) 158
MvaI CCWGG 1 cut(s) 158
NlaIII CATG 3 cut(s) 17, 103, 171
NmuCI GTSAC 1 cut(s) 73
PasI CCCWGGG 1 cut(s) 157
PceI AGGCCT 1 cut(s) 87
Psp6I CCWGG 1 cut(s) 156
PspGI CCWGG 1 cut(s) 156
PspPI GGNCC 3 cut(s) 123, 137, 164
RsaI GTAC 2 cut(s) 32, 114
RsaNI GTAC 2 cut(s) 31, 113
RseI CAYNNNNRTG 1 cut(s) 18
Sau96I GGNCC 3 cut(s) 123, 137, 164
ScrFI CCNGG 1 cut(s) 158
SetI ASST 1 cut(s) 32
SfcI CTRYAG 1 cut(s) 141
SgeI CNNG 8 cut(s) 26, 46, 90, 112, 133, 139, 143, 152
SinI GGWCC 1 cut(s) 137
SmiMI CAYNNNNRTG 1 cut(s) 18
SseBI AGGCCT 1 cut(s) 87
SsiI CCGC 1 cut(s) 61
StuI AGGCCT 1 cut(s) 87
StyD4I CCNGG 1 cut(s) 156
TaaI ACNGT 1 cut(s) 71
TaiI ACGT 1 cut(s) 32
TscAI CASTG 1 cut(s) 76
TseFI GTSAC 1 cut(s) 73
Tsp45I GTSAC 1 cut(s) 73
TspRI CASTG 1 cut(s) 76
VpaK11BI GGWCC 1 cut(s) 137
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.