Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0016651

Physical Location & Seq

Genomic Coordinates Reverse (-)

33003445 .. 33005531

Gene Structure 2087 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G355800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 204 bp

ATGGGGGGAGGACATGGAGAGGGCACCACGTACAAGGGCTTCACGGTGCATCAGCCTAAGCGATGGCACACGCTCACCGGCAAAGGCATGTGCGCTATGATGTGGTTTTGGGTGCTGTACAGGGCCAAGCAAGATGGTCCTGTAGTTCTGGGTTGGAGACATCCCTGGGAGGGGCATGGTGATCATTCCCATGGTGATCATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0005746 GO:0005747 GO:0016020 GO:0019866 GO:0030964 GO:0031090 GO:0031966 GO:0031967 GO:0031975 GO:0032991 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044455 GO:0044464 GO:0045271 GO:0070469 GO:0098796 GO:0098798 GO:0098800 GO:0098803 GO:1902494 GO:1990204

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

68

Amino Acids

7.64

Weight (kDa)

8.98

Isoelectric Point (pI)

29.04

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0016651)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G76200
fragaria_vesca	FvH4_2g37630
malus_domestica	MD08G1003800.v1.1 MD15G1003400.v1.1
prunus_persica	Prupe.1G355800_v2.0.a1 Prupe.1G355800_v2.0.a1
pyrus_communis	pycom08g00290
rosa_chinensis	RchiOBHm_Chr6g0304101
rosa_roxburghii	Rroxscaffold_7G00164070
rosa_rugosa	Rorug06G0327600
rosa_samantha	Rh6BG461200 Rh6CG453800 Rh6DG441000
rosa_wichuraiana	Rw6G038270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	23
AfaI	GTAC	2 cut(s)	32, 119
AfiI	CCNNNNNNNGG	2 cut(s)	170, 171
AjnI	CCWGG	1 cut(s)	164
Alw26I	GTCTC	1 cut(s)	151
AoxI	GGCC	1 cut(s)	123
AspLEI	GCGC	1 cut(s)	95
AspS9I	GGNCC	2 cut(s)	123, 137
AsuHPI	GGTGA	2 cut(s)	67, 191
AvaII	GGWCC	1 cut(s)	137
BaeGI	GKGCMC	1 cut(s)	26
BanI	GGYRCC	1 cut(s)	23
BarI	GAAGNNNNNNTAC	2 cut(s)	23, 55
BccI	CCATC	2 cut(s)	57, 128
BciT130I	CCWGG	1 cut(s)	166
BclI	TGATCA	2 cut(s)	181, 196
BcoDI	GTCTC	1 cut(s)	151
BfmI	CTRYAG	1 cut(s)	141
Bme1390I	CCNGG	1 cut(s)	166
Bme18I	GGWCC	1 cut(s)	137
BmgT120I	GGNCC	2 cut(s)	123, 137
BmiI	GGNNCC	1 cut(s)	25
BmrFI	CCNGG	1 cut(s)	166
BmsI	GCATC	1 cut(s)	58
Bpu10I	CCTNAGC	1 cut(s)	57
BsaAI	YACGTR	1 cut(s)	30
BsaJI	CCNNGG	3 cut(s)	164, 165, 190
Bsc4I	CCNNNNNNNGG	2 cut(s)	170, 171
Bse118I	RCCGGY	1 cut(s)	77
BseBI	CCWGG	1 cut(s)	166
BseDI	CCNNGG	3 cut(s)	164, 165, 190
BseGI	GGATG	1 cut(s)	160
BseLI	CCNNNNNNNGG	2 cut(s)	170, 171
BseSI	GKGCMC	1 cut(s)	26
BshFI	GGCC	1 cut(s)	125
BshNI	GGYRCC	1 cut(s)	23
BsiSI	CCGG	1 cut(s)	78
BslI	CCNNNNNNNGG	2 cut(s)	170, 171
BsmAI	GTCTC	1 cut(s)	151
BsnI	GGCC	1 cut(s)	125
Bsp1286I	GDGCHC	1 cut(s)	26
Bsp1407I	TGTACA	1 cut(s)	117
Bsp143I	GATC	2 cut(s)	181, 196
Bsp19I	CCATGG	1 cut(s)	190
BspANI	GGCC	1 cut(s)	125
BspLI	GGNNCC	1 cut(s)	25
BspT107I	GGYRCC	1 cut(s)	23
BsrFI	RCCGGY	1 cut(s)	77
BsrGI	TGTACA	1 cut(s)	117
BssAI	RCCGGY	1 cut(s)	77
BssECI	CCNNGG	3 cut(s)	164, 165, 190
BssMI	GATC	2 cut(s)	181, 196
BssT1I	CCWWGG	1 cut(s)	190
Bst2UI	CCWGG	1 cut(s)	166
Bst4CI	ACNGT	1 cut(s)	46
BstAUI	TGTACA	1 cut(s)	117
BstBAI	YACGTR	1 cut(s)	30
BstDEI	CTNAG	1 cut(s)	57
BstDSI	CCRYGG	1 cut(s)	190
BstF5I	GGATG	1 cut(s)	160
BstHHI	GCGC	1 cut(s)	95
BstKTI	GATC	2 cut(s)	184, 199
BstMAI	GTCTC	1 cut(s)	151
BstMBI	GATC	2 cut(s)	181, 196
BstNI	CCWGG	1 cut(s)	166
BstNSI	RCATGY	1 cut(s)	91
BstSCI	CCNGG	1 cut(s)	164
BstSFI	CTRYAG	1 cut(s)	141
BstSLI	GKGCMC	1 cut(s)	26
BsuRI	GGCC	1 cut(s)	125
BtgI	CCRYGG	1 cut(s)	190
BtgZI	GCGATG	1 cut(s)	76
BtsCI	GGATG	1 cut(s)	160
CfoI	GCGC	1 cut(s)	95
Cfr10I	RCCGGY	1 cut(s)	77
Cfr13I	GGNCC	2 cut(s)	123, 137
Csp6I	GTAC	2 cut(s)	31, 118
CviAII	CATG	4 cut(s)	14, 88, 176, 191
CviJI	RGCY	3 cut(s)	39, 55, 125
CviKI_1	RGCY	3 cut(s)	39, 55, 125
CviQI	GTAC	2 cut(s)	31, 118
DdeI	CTNAG	1 cut(s)	57
DpnI	GATC	2 cut(s)	183, 198
DpnII	GATC	2 cut(s)	181, 196
Eco130I	CCWWGG	1 cut(s)	190
Eco47I	GGWCC	1 cut(s)	137
EcoRII	CCWGG	1 cut(s)	164
EcoT14I	CCWWGG	1 cut(s)	190
ErhI	CCWWGG	1 cut(s)	190
FaeI	CATG	4 cut(s)	17, 91, 179, 194
FaiI	YATR	5 cut(s)	15, 89, 98, 177, 192
FatI	CATG	4 cut(s)	13, 87, 175, 190
FbaI	TGATCA	2 cut(s)	181, 196
FokI	GGATG	1 cut(s)	147
GlaI	GCGC	1 cut(s)	94
HaeIII	GGCC	1 cut(s)	125
HapII	CCGG	1 cut(s)	78
HhaI	GCGC	1 cut(s)	95
Hin1II	CATG	4 cut(s)	17, 91, 179, 194
Hin6I	GCGC	1 cut(s)	93
HinP1I	GCGC	1 cut(s)	93
HpaII	CCGG	1 cut(s)	78
HphI	GGTGA	2 cut(s)	67, 191
HpyCH4III	ACNGT	1 cut(s)	46
HpyCH4IV	ACGT	1 cut(s)	29
HpyCH4V	TGCA	1 cut(s)	49
HpyF3I	CTNAG	1 cut(s)	57
HpySE526I	ACGT	1 cut(s)	29
Hsp92II	CATG	4 cut(s)	17, 91, 179, 194
HspAI	GCGC	1 cut(s)	93
Ksp22I	TGATCA	2 cut(s)	181, 196
Kzo9I	GATC	2 cut(s)	181, 196
LpnPI	CCDG	6 cut(s)	91, 106, 134, 151, 153, 178
LweI	GCATC	1 cut(s)	58
MaeII	ACGT	1 cut(s)	29
MalI	GATC	2 cut(s)	183, 198
MboI	GATC	2 cut(s)	181, 196
MhlI	GDGCHC	1 cut(s)	26
MmeI	TCCRAC	1 cut(s)	134
MnlI	CCTC	2 cut(s)	13, 163
MslI	CAYNNNNRTG	1 cut(s)	189
MspI	CCGG	1 cut(s)	78
MspR9I	CCNGG	1 cut(s)	166
MvaI	CCWGG	1 cut(s)	166
NcoI	CCATGG	1 cut(s)	190
NdeII	GATC	2 cut(s)	181, 196
NlaIII	CATG	4 cut(s)	17, 91, 179, 194
NlaIV	GGNNCC	1 cut(s)	25
NspI	RCATGY	1 cut(s)	91
PasI	CCCWGGG	1 cut(s)	165
Ppu21I	YACGTR	1 cut(s)	30
Psp6I	CCWGG	1 cut(s)	164
PspGI	CCWGG	1 cut(s)	164
PspN4I	GGNNCC	1 cut(s)	25
PspPI	GGNCC	2 cut(s)	123, 137
RsaI	GTAC	2 cut(s)	32, 119
RsaNI	GTAC	2 cut(s)	31, 118
RseI	CAYNNNNRTG	1 cut(s)	189
Sau3AI	GATC	2 cut(s)	181, 196
Sau96I	GGNCC	2 cut(s)	123, 137
ScrFI	CCNGG	1 cut(s)	166
SduI	GDGCHC	1 cut(s)	26
SetI	ASST	1 cut(s)	32
SfaNI	GCATC	1 cut(s)	58
SfcI	CTRYAG	1 cut(s)	141
SinI	GGWCC	1 cut(s)	137
SmiMI	CAYNNNNRTG	1 cut(s)	189
StyD4I	CCNGG	1 cut(s)	164
StyI	CCWWGG	1 cut(s)	190
TaaI	ACNGT	1 cut(s)	46
TaiI	ACGT	1 cut(s)	32
TatI	WGTACW	1 cut(s)	117
VpaK11BI	GGWCC	1 cut(s)	137
XceI	RCATGY	1 cut(s)	91

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.