MD15G1003400.v1.1

No description available

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr15
Physical Location & Seq
Reverse (-)
199402 .. 201484
2083 bp
Loading structure...
UTR
Exon/CDS
Intron
MD15G1003400.v1.1.491

Sequence Viewer

Length: 177 bp
ATGGGAGGAGGACACGGCGAGGGCATAACGTATAAGGGAATCACGGTGCATCAGCCAAAGCGGTGGCACACCCTCACCGGCAAAGGCATGTGTGCTGTGATGTGGTTTTGGGTACTGTACAGGGCCAAGAAGGATGGTCCTGTAGTTTTGGTTTCCTGTGGAAGAGCCAAGAGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

59

Amino Acids

6.39

Weight (kDa)

10.03

Isoelectric Point (pI)

28.37

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0016651)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G76200
fragaria_vesca FvH4_2g37630
malus_domestica MD08G1003800.v1.1 MD15G1003400.v1.1
prunus_persica Prupe.1G355800_v2.0.a1 Prupe.1G355800_v2.0.a1
pyrus_communis pycom08g00290
rosa_chinensis RchiOBHm_Chr6g0304101
rosa_roxburghii Rroxscaffold_7G00164070
rosa_rugosa Rorug06G0327600
rosa_samantha Rh6BG461200 Rh6CG453800 Rh6DG441000
rosa_wichuraiana Rw6G038270

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 61
AfaI GTAC 2 cut(s) 114, 119
AoxI GGCC 1 cut(s) 123
AspS9I GGNCC 2 cut(s) 123, 137
AsuHPI GGTGA 1 cut(s) 67
AvaII GGWCC 1 cut(s) 137
BccI CCATC 1 cut(s) 128
BceAI ACGGC 1 cut(s) 31
BfmI CTRYAG 1 cut(s) 141
Bme18I GGWCC 1 cut(s) 137
BmgT120I GGNCC 2 cut(s) 123, 137
BmsI GCATC 1 cut(s) 58
Bse118I RCCGGY 1 cut(s) 77
BseGI GGATG 1 cut(s) 139
BseRI GAGGAG 1 cut(s) 21
BshFI GGCC 1 cut(s) 125
BsiSI CCGG 1 cut(s) 78
BsnI GGCC 1 cut(s) 125
Bsp1407I TGTACA 1 cut(s) 117
BspACI CCGC 1 cut(s) 61
BspANI GGCC 1 cut(s) 125
BspQI GCTCTTC 1 cut(s) 157
BsrFI RCCGGY 1 cut(s) 77
BsrGI TGTACA 1 cut(s) 117
BssAI RCCGGY 1 cut(s) 77
Bst4CI ACNGT 2 cut(s) 46, 117
Bst6I CTCTTC 1 cut(s) 157
BstAUI TGTACA 1 cut(s) 117
BstF5I GGATG 1 cut(s) 139
BstNSI RCATGY 1 cut(s) 91
BstSFI CTRYAG 1 cut(s) 141
BstXI CCANNNNNNTGG 1 cut(s) 63
BsuRI GGCC 1 cut(s) 125
BtsCI GGATG 1 cut(s) 139
Cfr10I RCCGGY 1 cut(s) 77
Cfr13I GGNCC 2 cut(s) 123, 137
Csp6I GTAC 2 cut(s) 113, 118
CviAII CATG 1 cut(s) 88
CviJI RGCY 3 cut(s) 55, 125, 167
CviKI_1 RGCY 3 cut(s) 55, 125, 167
CviQI GTAC 2 cut(s) 113, 118
Eam1104I CTCTTC 1 cut(s) 157
EarI CTCTTC 1 cut(s) 157
Eco47I GGWCC 1 cut(s) 137
FaeI CATG 1 cut(s) 91
FaiI YATR 3 cut(s) 26, 33, 89
FatI CATG 1 cut(s) 87
FokI GGATG 1 cut(s) 146
HaeIII GGCC 1 cut(s) 125
HapII CCGG 1 cut(s) 78
Hin1II CATG 1 cut(s) 91
HinfI GANTC 1 cut(s) 39
HpaII CCGG 1 cut(s) 78
HphI GGTGA 1 cut(s) 67
HpyAV CCTTC 1 cut(s) 124
HpyCH4III ACNGT 2 cut(s) 46, 117
HpyCH4IV ACGT 1 cut(s) 29
HpyCH4V TGCA 1 cut(s) 49
HpySE526I ACGT 1 cut(s) 29
Hsp92II CATG 1 cut(s) 91
LguI GCTCTTC 1 cut(s) 157
LpnPI CCDG 4 cut(s) 91, 106, 153, 169
LweI GCATC 1 cut(s) 58
MaeII ACGT 1 cut(s) 29
MboII GAAGA 1 cut(s) 174
MnlI CCTC 2 cut(s) 13, 83
MspI CCGG 1 cut(s) 78
NlaIII CATG 1 cut(s) 91
NspI RCATGY 1 cut(s) 91
PciSI GCTCTTC 1 cut(s) 157
PfeI GAWTC 1 cut(s) 39
PspPI GGNCC 2 cut(s) 123, 137
RsaI GTAC 2 cut(s) 114, 119
RsaNI GTAC 2 cut(s) 113, 118
SapI GCTCTTC 1 cut(s) 157
Sau96I GGNCC 2 cut(s) 123, 137
SetI ASST 1 cut(s) 32
SfaNI GCATC 1 cut(s) 58
SfcI CTRYAG 1 cut(s) 141
SgeI CNNG 9 cut(s) 26, 31, 55, 90, 100, 133, 139, 152, 168
SinI GGWCC 1 cut(s) 137
SsiI CCGC 1 cut(s) 61
TaaI ACNGT 2 cut(s) 46, 117
TaiI ACGT 1 cut(s) 32
TatI WGTACW 1 cut(s) 117
TfiI GAWTC 1 cut(s) 39
VpaK11BI GGWCC 1 cut(s) 137
XceI RCATGY 1 cut(s) 91
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.