MD08G1003800.v1.1

No description available

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr08
Physical Location & Seq
Reverse (-)
376247 .. 378306
2060 bp
Loading structure...
UTR
Exon/CDS
Intron
MD08G1003800.v1.1.491

Sequence Viewer

Length: 177 bp
ATGGGAGGAGGACACGGAGAGGGCATAACATACAAGGGAATCACGGTGCATCAGCCAAAGCGGTGGCACACCCTCACCGGCAAAGGCATGTGTGCTGTGATGTGGTTTTGGGTACTGTACAGGGCCAAGAAGGATGGTCCTGTAGTTTTGGGATCCTGTGGAAGAGCCAAGAGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

59

Amino Acids

6.35

Weight (kDa)

10.03

Isoelectric Point (pI)

28.37

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0016651)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G76200
fragaria_vesca FvH4_2g37630
malus_domestica MD08G1003800.v1.1 MD15G1003400.v1.1
prunus_persica Prupe.1G355800_v2.0.a1 Prupe.1G355800_v2.0.a1
pyrus_communis pycom08g00290
rosa_chinensis RchiOBHm_Chr6g0304101
rosa_roxburghii Rroxscaffold_7G00164070
rosa_rugosa Rorug06G0327600
rosa_samantha Rh6BG461200 Rh6CG453800 Rh6DG441000
rosa_wichuraiana Rw6G038270

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 61
AclWI GGATC 2 cut(s) 147, 160
AfaI GTAC 2 cut(s) 114, 119
AlwI GGATC 2 cut(s) 147, 160
AoxI GGCC 1 cut(s) 123
AspS9I GGNCC 2 cut(s) 123, 137
AsuHPI GGTGA 1 cut(s) 67
AvaII GGWCC 1 cut(s) 137
BamHI GGATCC 1 cut(s) 152
BccI CCATC 1 cut(s) 128
BfmI CTRYAG 1 cut(s) 141
Bme18I GGWCC 1 cut(s) 137
BmgT120I GGNCC 2 cut(s) 123, 137
BmiI GGNNCC 1 cut(s) 154
BmsI GCATC 1 cut(s) 58
Bse118I RCCGGY 1 cut(s) 77
BseGI GGATG 1 cut(s) 139
BseRI GAGGAG 1 cut(s) 21
BshFI GGCC 1 cut(s) 125
BsiSI CCGG 1 cut(s) 78
BsnI GGCC 1 cut(s) 125
Bsp1407I TGTACA 1 cut(s) 117
Bsp143I GATC 1 cut(s) 152
BspACI CCGC 1 cut(s) 61
BspANI GGCC 1 cut(s) 125
BspLI GGNNCC 1 cut(s) 154
BspPI GGATC 2 cut(s) 147, 160
BspQI GCTCTTC 1 cut(s) 157
BsrFI RCCGGY 1 cut(s) 77
BsrGI TGTACA 1 cut(s) 117
BssAI RCCGGY 1 cut(s) 77
BssMI GATC 1 cut(s) 152
Bst4CI ACNGT 2 cut(s) 46, 117
Bst6I CTCTTC 1 cut(s) 157
BstAUI TGTACA 1 cut(s) 117
BstF5I GGATG 1 cut(s) 139
BstKTI GATC 1 cut(s) 155
BstMBI GATC 1 cut(s) 152
BstNSI RCATGY 1 cut(s) 91
BstSFI CTRYAG 1 cut(s) 141
BstX2I RGATCY 1 cut(s) 152
BstXI CCANNNNNNTGG 1 cut(s) 63
BstYI RGATCY 1 cut(s) 152
BsuRI GGCC 1 cut(s) 125
BtsCI GGATG 1 cut(s) 139
Cfr10I RCCGGY 1 cut(s) 77
Cfr13I GGNCC 2 cut(s) 123, 137
Csp6I GTAC 2 cut(s) 113, 118
CviAII CATG 1 cut(s) 88
CviJI RGCY 3 cut(s) 55, 125, 167
CviKI_1 RGCY 3 cut(s) 55, 125, 167
CviQI GTAC 2 cut(s) 113, 118
DpnI GATC 1 cut(s) 154
DpnII GATC 1 cut(s) 152
Eam1104I CTCTTC 1 cut(s) 157
EarI CTCTTC 1 cut(s) 157
Eco47I GGWCC 1 cut(s) 137
FaeI CATG 1 cut(s) 91
FaiI YATR 3 cut(s) 26, 31, 89
FatI CATG 1 cut(s) 87
FokI GGATG 1 cut(s) 146
HaeIII GGCC 1 cut(s) 125
HapII CCGG 1 cut(s) 78
Hin1II CATG 1 cut(s) 91
HinfI GANTC 1 cut(s) 39
HpaII CCGG 1 cut(s) 78
HphI GGTGA 1 cut(s) 67
HpyAV CCTTC 1 cut(s) 124
HpyCH4III ACNGT 2 cut(s) 46, 117
HpyCH4V TGCA 1 cut(s) 49
Hsp92II CATG 1 cut(s) 91
Kzo9I GATC 1 cut(s) 152
LguI GCTCTTC 1 cut(s) 157
LpnPI CCDG 4 cut(s) 91, 106, 153, 169
LweI GCATC 1 cut(s) 58
MalI GATC 1 cut(s) 154
MboI GATC 1 cut(s) 152
MboII GAAGA 1 cut(s) 174
MflI RGATCY 1 cut(s) 152
MnlI CCTC 2 cut(s) 13, 83
MspI CCGG 1 cut(s) 78
NdeII GATC 1 cut(s) 152
NlaIII CATG 1 cut(s) 91
NlaIV GGNNCC 1 cut(s) 154
NspI RCATGY 1 cut(s) 91
PciSI GCTCTTC 1 cut(s) 157
PfeI GAWTC 1 cut(s) 39
PspN4I GGNNCC 1 cut(s) 154
PspPI GGNCC 2 cut(s) 123, 137
PsuI RGATCY 1 cut(s) 152
RsaI GTAC 2 cut(s) 114, 119
RsaNI GTAC 2 cut(s) 113, 118
SapI GCTCTTC 1 cut(s) 157
Sau3AI GATC 1 cut(s) 152
Sau96I GGNCC 2 cut(s) 123, 137
SfaNI GCATC 1 cut(s) 58
SfcI CTRYAG 1 cut(s) 141
SgeI CNNG 9 cut(s) 26, 46, 55, 90, 100, 133, 139, 152, 168
SinI GGWCC 1 cut(s) 137
SsiI CCGC 1 cut(s) 61
TaaI ACNGT 2 cut(s) 46, 117
TatI WGTACW 1 cut(s) 117
TfiI GAWTC 1 cut(s) 39
TspGWI ACGGA 1 cut(s) 30
VpaK11BI GGWCC 1 cut(s) 137
XceI RCATGY 1 cut(s) 91
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.