Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6B

Orthogroup ID

OG0016651

Physical Location & Seq

Genomic Coordinates Reverse (-)

67158899 .. 67159928

Gene Structure 1030 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6BG461200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 213 bp

ATGGGAGGAGGACATGGAGATGGCATAACGTACAAGGGCGTTACCATCCATCAGCCGAAGCGGTGGCACACTGTCACCGGAAAAGGCCTTTGCGCCGTCATGTGGTTTTGGGTACTTTACAGGGCCAAGCAAGATGGTCCTGTAGTGCTGGGTTGGAGACATCCCTGGGAGGGCCATGATGATCATGGTCATGGGCATGATGAACATCATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0005746 GO:0005747 GO:0016020 GO:0019866 GO:0030964 GO:0031090 GO:0031966 GO:0031967 GO:0031975 GO:0032991 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044455 GO:0044464 GO:0045271 GO:0070469 GO:0098796 GO:0098798 GO:0098800 GO:0098803 GO:1902494 GO:1990204

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

70

Amino Acids

7.97

Weight (kDa)

7.17

Isoelectric Point (pI)

27.97

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016651)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G76200
fragaria_vesca	FvH4_2g37630
malus_domestica	MD08G1003800.v1.1 MD15G1003400.v1.1
prunus_persica	Prupe.1G355800_v2.0.a1 Prupe.1G355800_v2.0.a1
pyrus_communis	pycom08g00290
rosa_chinensis	RchiOBHm_Chr6g0304101
rosa_roxburghii	Rroxscaffold_7G00164070
rosa_rugosa	Rorug06G0327600
rosa_samantha	Rh6BG461200 Rh6CG453800 Rh6DG441000
rosa_wichuraiana	Rw6G038270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	61
AfaI	GTAC	2 cut(s)	32, 114
AfiI	CCNNNNNNNGG	2 cut(s)	102, 170
AjnI	CCWGG	1 cut(s)	164
Alw26I	GTCTC	1 cut(s)	151
AoxI	GGCC	3 cut(s)	85, 123, 172
AspLEI	GCGC	1 cut(s)	95
AspS9I	GGNCC	3 cut(s)	123, 137, 172
AsuHPI	GGTGA	1 cut(s)	67
AvaII	GGWCC	1 cut(s)	137
BccI	CCATC	4 cut(s)	14, 53, 57, 128
BceAI	ACGGC	1 cut(s)	80
BciT130I	CCWGG	1 cut(s)	166
BclI	TGATCA	1 cut(s)	181
BcoDI	GTCTC	1 cut(s)	151
BfmI	CTRYAG	1 cut(s)	141
Bme1390I	CCNGG	1 cut(s)	166
Bme18I	GGWCC	1 cut(s)	137
BmgT120I	GGNCC	3 cut(s)	123, 137, 172
BmrFI	CCNGG	1 cut(s)	166
BsaBI	GATNNNNATC	1 cut(s)	204
BsaJI	CCNNGG	2 cut(s)	164, 165
BsaWI	WCCGGW	1 cut(s)	77
Bsc4I	CCNNNNNNNGG	2 cut(s)	102, 170
Bse8I	GATNNNNATC	1 cut(s)	204
BseBI	CCWGG	1 cut(s)	166
BseDI	CCNNGG	2 cut(s)	164, 165
BseGI	GGATG	2 cut(s)	45, 160
BseJI	GATNNNNATC	1 cut(s)	204
BseLI	CCNNNNNNNGG	2 cut(s)	102, 170
BseRI	GAGGAG	1 cut(s)	21
BseYI	CCCAGC	1 cut(s)	148
BshFI	GGCC	3 cut(s)	87, 125, 174
BsiSI	CCGG	1 cut(s)	78
BslI	CCNNNNNNNGG	2 cut(s)	102, 170
BsmAI	GTCTC	1 cut(s)	151
BsnI	GGCC	3 cut(s)	87, 125, 174
Bsp143I	GATC	1 cut(s)	181
BspACI	CCGC	1 cut(s)	61
BspANI	GGCC	3 cut(s)	87, 125, 174
BssECI	CCNNGG	2 cut(s)	164, 165
BssMI	GATC	1 cut(s)	181
Bst2UI	CCWGG	1 cut(s)	166
Bst4CI	ACNGT	1 cut(s)	73
BstF5I	GGATG	2 cut(s)	45, 160
BstHHI	GCGC	1 cut(s)	95
BstKTI	GATC	1 cut(s)	184
BstMAI	GTCTC	1 cut(s)	151
BstMBI	GATC	1 cut(s)	181
BstNI	CCWGG	1 cut(s)	166
BstSCI	CCNGG	1 cut(s)	164
BstSFI	CTRYAG	1 cut(s)	141
BsuRI	GGCC	3 cut(s)	87, 125, 174
BtsCI	GGATG	2 cut(s)	45, 160
BtsIMutI	CAGTG	1 cut(s)	69
CfoI	GCGC	1 cut(s)	95
Cfr13I	GGNCC	3 cut(s)	123, 137, 172
Csp6I	GTAC	2 cut(s)	31, 113
CviAII	CATG	6 cut(s)	14, 100, 176, 185, 191, 197
CviJI	RGCY	4 cut(s)	55, 87, 125, 174
CviKI_1	RGCY	4 cut(s)	55, 87, 125, 174
CviQI	GTAC	2 cut(s)	31, 113
DpnI	GATC	1 cut(s)	183
DpnII	GATC	1 cut(s)	181
Eco147I	AGGCCT	1 cut(s)	87
Eco47I	GGWCC	1 cut(s)	137
EcoRII	CCWGG	1 cut(s)	164
FaeI	CATG	6 cut(s)	17, 103, 179, 188, 194, 200
FaiI	YATR	7 cut(s)	15, 26, 101, 177, 186, 192, 198
FatI	CATG	6 cut(s)	13, 99, 175, 184, 190, 196
FbaI	TGATCA	1 cut(s)	181
FokI	GGATG	2 cut(s)	32, 147
GlaI	GCGC	1 cut(s)	94
GsaI	CCCAGC	1 cut(s)	152
HaeIII	GGCC	3 cut(s)	87, 125, 174
HapII	CCGG	1 cut(s)	78
HhaI	GCGC	1 cut(s)	95
Hin1II	CATG	6 cut(s)	17, 103, 179, 188, 194, 200
Hin6I	GCGC	1 cut(s)	93
HinP1I	GCGC	1 cut(s)	93
HpaII	CCGG	1 cut(s)	78
HphI	GGTGA	1 cut(s)	67
HpyCH4III	ACNGT	1 cut(s)	73
HpyCH4IV	ACGT	1 cut(s)	29
HpySE526I	ACGT	1 cut(s)	29
Hsp92II	CATG	6 cut(s)	17, 103, 179, 188, 194, 200
HspAI	GCGC	1 cut(s)	93
Ksp22I	TGATCA	1 cut(s)	181
Kzo9I	GATC	1 cut(s)	181
LpnPI	CCDG	6 cut(s)	91, 106, 134, 151, 153, 178
MaeII	ACGT	1 cut(s)	29
MaeIII	GTNAC	2 cut(s)	40, 73
MalI	GATC	1 cut(s)	183
MboI	GATC	1 cut(s)	181
MmeI	TCCRAC	1 cut(s)	134
MnlI	CCTC	1 cut(s)	163
MslI	CAYNNNNRTG	3 cut(s)	18, 189, 195
MspI	CCGG	1 cut(s)	78
MspR9I	CCNGG	1 cut(s)	166
MvaI	CCWGG	1 cut(s)	166
NdeII	GATC	1 cut(s)	181
NlaIII	CATG	6 cut(s)	17, 103, 179, 188, 194, 200
NmuCI	GTSAC	1 cut(s)	73
PasI	CCCWGGG	1 cut(s)	165
PceI	AGGCCT	1 cut(s)	87
Psp6I	CCWGG	1 cut(s)	164
PspFI	CCCAGC	1 cut(s)	148
PspGI	CCWGG	1 cut(s)	164
PspPI	GGNCC	3 cut(s)	123, 137, 172
RsaI	GTAC	2 cut(s)	32, 114
RsaNI	GTAC	2 cut(s)	31, 113
RseI	CAYNNNNRTG	3 cut(s)	18, 189, 195
Sau3AI	GATC	1 cut(s)	181
Sau96I	GGNCC	3 cut(s)	123, 137, 172
ScrFI	CCNGG	1 cut(s)	166
SetI	ASST	1 cut(s)	32
SfcI	CTRYAG	1 cut(s)	141
SinI	GGWCC	1 cut(s)	137
SmiMI	CAYNNNNRTG	3 cut(s)	18, 189, 195
SseBI	AGGCCT	1 cut(s)	87
SsiI	CCGC	1 cut(s)	61
StuI	AGGCCT	1 cut(s)	87
StyD4I	CCNGG	1 cut(s)	164
TaaI	ACNGT	1 cut(s)	73
TaiI	ACGT	1 cut(s)	32
TscAI	CASTG	1 cut(s)	76
TseFI	GTSAC	1 cut(s)	73
Tsp45I	GTSAC	1 cut(s)	73
TspRI	CASTG	1 cut(s)	76
VpaK11BI	GGWCC	1 cut(s)	137
XcmI	CCANNNNNNNNNTGG	1 cut(s)	182

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.