AT1G76390

RING-type E3 ubiquitin transferase

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
Physical Location & Seq
Forward (+)
28655208 .. 28658711
3504 bp
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UTR
Exon/CDS
Intron
AT1G76390.1

Sequence Viewer

Length: 2436 bp
ATGGCTGGAAGTGGAAGTTGGGATGGAAGCCAATCGGATAACAGCTCACAATTCGAGCCAGGGATTGATAACATATACGAAGCTTTTATCTGTCCATTGACAAAGCAAGTTATGCATAATCCTGTCACTTTAGAGAATGGTCAGACATTTGAGCGTGAAGCTATTGAGAAATGGTTTCAAGAATGTCGTGAAAACGGTCAACCTCTATCTTGTCCTATAACTTCTAAGGAGTTGAGTATCACTGATCTAAGTCCAAGTATAGCTTTACGTAACACTATTGAAGAGTGGAGAGCAAGGAATGATGCTTTGAAGCTTGATATTGCTCGTCAGTCACTTTATTTGGGAAATGCTGAGACTAATATTTTGCTGGCTTTGAAGAATGTCAGAGAGATTTGTAGGAATATACGTAAAATTAGGCAACGTGTGTGCAATCCTCAGCTTGTTCGGTTGATTACCGATATGCTAAAGAGTAGTAGTCATGAAGTGCGGTGTAAGGCTCTACAAACTCTTCAAGTAGTCGTTGAAGGAGATGAAGAGAGCAAGGCAATAGTAGCTGAAGGAGACACTGTGCGTACTATAGTTAAGTTCTTGTCTCAAGAGCCATCAAAGGGGAGGGAAGCAGCTGTTTCCGTGTTGTTTGAGCTCTCTAAATCTGAAGCATTATGCGAGAAGATTGGATCAATCCATGGAGCAATCATCTTATTGGTTGGTCTGACAAGCAGCAAATCAGAGAATGTTTCAACTGTTGAGAAAGCTGATAAAACTTTGACAAATTTGGAGAGGTCAGAGGAAAATGTTCGACAGATGGCTATCAATGGTAGACTGCAGCCTCTTCTTGCTAAACTTCTTGAAGGTTCACCGGAAACAAAAGTTTCCATGGCTTTCTATCTTGGGGTTCTTGCTTTAAATAACGATGTGAAAGTTATTGTGGCTCAGACTGTGGGTTCTTCTCTTATCGATCTTATGAGAACTCGCGACATGAGCCAACGGGAAGCTGCTTTGGGAGCTCTTAACAACATCTCATCCTTTGAAGGGAGTGCTAAACTCTTAATCAACACCGGAATTCTCCCACCGCTTATCAAAGACTTGTTCTATGTTGGGCCAAACCAGCTTCCAATCCGACTTAAAGAAGTCTCTGCAACTATTCTTGCCAATATAGTGAACATTGGGTACGACTTCGACAAAGTTCCTGTTGGACCTCATCACCAAACTCTTGTTTCAGAGGAAATAGTGGAGAACCTTCTCCAACTAACAAGCAACACTGGTCCAGAAATCCAAGGAAAGCTGTTGGCGGTTCTTGTTGGACTCACTAGCTGTCCAAACTCGGTTATTAATGTTGTTTCTGCCATCAGAAACTCAGCTGCCATCATAAGCTTGGTTCAGTTTGTTGAGATACATGAGAACGATGATTTGCGGTTAGCTTCTATCAAGCTTCTTCATAACATTTCCCCACACATGAGTGAAGAACTAGCCAATGCGTTGCGTAGCACTGTTGGACAGCTCGGAAGCCTTGTTTCGATCATATCAGAGAATACACCAACAATCACTGAGGAACAAGCTGCAGCTGCTGGACTTTTAGCTGAACTTCCTGAGAGAGATTTGGTTCTGACAATGAGATTGTTAAGAGAAGGTGCTTTTGAGAAAATCATCTCCAAGATAGTTGGTATTCGCCAAGGAGAAATCAGAGGAATCCGGTTCGAGAGAACATTTCTCGAAGGACTTGTTAGTATTCTCGCTCGGATCACCTTCGCACTCACCAAGGAGACTGACGCCACTTTGTTCTGCTGTGAGAAAAATCTTCCTTCACTTTTCCTTGATCTCCTTCAATCCAACAGTCAAGATAACATCCAGAGGGCTTCTGCAACAGCATTGGAGAATCTTTCACTTGAATCCAAAAATCTTACAAAGATACCTGAACTGCCTCCTCCTACTTACTGTGTATCCATCTTTTCATGTCTGAGCAAACCGCCTGTTGTTCTAGGGATTTGCAAGATCCATCAAGGGATATGTTCAGTAAGAGAAAGCTTTTGTCTCGTTGAAGGACAAGCAGTAGATAAGTTGGTTGATCTCTTAGACCATGAAAATGACAAGGTGGTTGGACCAGCACTTGCAGCTCTCTCTACATTGTTAGAGGACGGTTTAGATGTTGTACAAGGAGTGAGATTAATTGATGAAGCAGACGGGATTACGCCTATATTAAATGTTCTTTTGGAGAATCGAACAGAGAATTTAAGGATTAGAGCTGTGTGGATGGTCGAGAGGATCTTACGTATTGAAGAAATAGCTAGAGAAGTGGGAGAAGAACAAAATGTAACTGCAGCACTTGTGGACGCCTTTCAAAACGCCGATTTTAGGACACGACAGATTGCAGAGAAGGCGTTGAGGCACATCGACAAAATCCCAAACTTCTCTGGTATATTCACCAACATTGGTTAG

Protein Analysis

811

Amino Acids

89.11

Weight (kDa)

5.24

Isoelectric Point (pI)

43.42

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
U-box PF04564 27 - 100 1.1e-12 U-box domain
ARM_ARMC5 PF24768 119 - 283 1e-07 ARMC5
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 820
AccII CGCG 1 cut(s) 975
AciI CCGC 5 cut(s) 487, 1073, 1292, 1414, 1967
AclWI GGATC 4 cut(s) 685, 1748, 1987, 2270
AcsI RAATTY 3 cut(s) 772, 1062, 2227
AcuI CTGAAG 2 cut(s) 576, 675
AcyI GRCGYC 2 cut(s) 1770, 2331
AfaI GTAC 3 cut(s) 574, 1172, 2151
AfiI CCNNNNNNNGG 3 cut(s) 608, 1032, 2352
AflIII ACRYGT 1 cut(s) 421
AjnI CCWGG 1 cut(s) 58
AjuI GAANNNNNNNTTGG 1 cut(s) 33
AleI CACNNNNGTG 1 cut(s) 1458
Alw21I GWGCWC 2 cut(s) 645, 1009
Alw26I GTCTC 6 cut(s) 347, 555, 597, 1138, 1757, 2036
AlwI GGATC 4 cut(s) 685, 1748, 1987, 2270
AlwNI CAGNNNCTG 1 cut(s) 1568
AoxI GGCC 1 cut(s) 1100
ApoI RAATTY 3 cut(s) 772, 1062, 2227
ArsI GACNNNNNNTTYG 2 cut(s) 346, 378
AseI ATTAAT 2 cut(s) 1332, 2165
Asp700I GAANNNNTTC 1 cut(s) 795
AspS9I GGNCC 4 cut(s) 1100, 1196, 1265, 2099
AsuHPI GGTGA 5 cut(s) 849, 1196, 1735, 1747, 2413
AvaII GGWCC 3 cut(s) 1196, 1265, 2099
BanII GRGCYC 2 cut(s) 645, 1009
Bbv12I GWGCWC 2 cut(s) 645, 1009
BbvCI CCTCAGC 1 cut(s) 435
BccI CCATC 8 cut(s) 17, 610, 799, 1355, 1373, 1952, 2004, 2245
BciT130I CCWGG 1 cut(s) 60
BciVI GTATCC 1 cut(s) 1951
BcoDI GTCTC 6 cut(s) 347, 555, 597, 1138, 1757, 2036
BfaI CTAG 4 cut(s) 1311, 1469, 1979, 2286
BfmI CTRYAG 4 cut(s) 576, 824, 1560, 2316
BfuI GTATCC 1 cut(s) 1951
Bme1390I CCNGG 1 cut(s) 60
Bme18I GGWCC 3 cut(s) 1196, 1265, 2099
BmgT120I GGNCC 4 cut(s) 1100, 1196, 1265, 2099
BmrFI CCNGG 1 cut(s) 60
BmsI GCATC 1 cut(s) 292
Bpu10I CCTNAGC 1 cut(s) 435
BpuEI CTTGAG 1 cut(s) 579
Bsa29I ATCGAT 1 cut(s) 957
BsaAI YACGTR 3 cut(s) 269, 407, 2270
BsaBI GATNNNNATC 1 cut(s) 809
BsaHI GRCGYC 2 cut(s) 1770, 2331
BsaJI CCNNGG 6 cut(s) 59, 685, 876, 1276, 1672, 1758
BsaWI WCCGGW 3 cut(s) 859, 1058, 1692
BsaXI ACNNNNNCTCC 2 cut(s) 552, 582
Bsc4I CCNNNNNNNGG 3 cut(s) 608, 1032, 2352
Bse1I ACTGG 1 cut(s) 1267
Bse8I GATNNNNATC 1 cut(s) 809
BseBI CCWGG 1 cut(s) 60
BseCI ATCGAT 1 cut(s) 957
BseDI CCNNGG 6 cut(s) 59, 685, 876, 1276, 1672, 1758
BseGI GGATG 4 cut(s) 28, 1022, 1845, 2256
BseJI GATNNNNATC 1 cut(s) 809
BseLI CCNNNNNNNGG 3 cut(s) 608, 1032, 2352
BseMII CTCAG 7 cut(s) 342, 449, 947, 1371, 1539, 1581, 1949
BseNI ACTGG 1 cut(s) 1267
BseRI GAGGAG 1 cut(s) 1914
Bsh1236I CGCG 1 cut(s) 975
BshFI GGCC 1 cut(s) 1102
BshVI ATCGAT 1 cut(s) 957
BsiHKAI GWGCWC 2 cut(s) 645, 1009
BsiSI CCGG 3 cut(s) 860, 1059, 1693
BslI CCNNNNNNNGG 3 cut(s) 608, 1032, 2352
BsmAI GTCTC 6 cut(s) 347, 555, 597, 1138, 1757, 2036
BsnI GGCC 1 cut(s) 1102
Bsp1286I GDGCHC 2 cut(s) 645, 1009
Bsp1407I TGTACA 1 cut(s) 2149
Bsp143I GATC 9 cut(s) 244, 677, 958, 1518, 1740, 1816, 1992, 2065, 2262
Bsp19I CCATGG 2 cut(s) 685, 876
Bsp68I TCGCGA 1 cut(s) 975
BspACI CCGC 5 cut(s) 487, 1073, 1292, 1414, 1967
BspANI GGCC 1 cut(s) 1102
BspCNI CTCAG 7 cut(s) 343, 448, 946, 1370, 1540, 1582, 1950
BspDI ATCGAT 1 cut(s) 957
BspFNI CGCG 1 cut(s) 975
BspHI TCATGA 1 cut(s) 478
BspMAI CTGCAG 3 cut(s) 828, 1564, 2320
BspPI GGATC 4 cut(s) 685, 1748, 1987, 2270
BsrGI TGTACA 1 cut(s) 2149
BsrI ACTGG 1 cut(s) 1267
BssECI CCNNGG 6 cut(s) 59, 685, 876, 1276, 1672, 1758
BssMI GATC 9 cut(s) 244, 677, 958, 1518, 1740, 1816, 1992, 2065, 2262
BssNI GRCGYC 2 cut(s) 1770, 2331
BssT1I CCWWGG 5 cut(s) 685, 876, 1276, 1672, 1758
Bst2UI CCWGG 1 cut(s) 60
Bst4CI ACNGT 8 cut(s) 197, 568, 745, 940, 1492, 1835, 1937, 2138
Bst6I CTCTTC 4 cut(s) 276, 513, 528, 837
BstACI GRCGYC 2 cut(s) 1770, 2331
BstAPI GCANNNNNTGC 1 cut(s) 112
BstAUI TGTACA 1 cut(s) 2149
BstBAI YACGTR 3 cut(s) 269, 407, 2270
BstC8I GCNNGC 1 cut(s) 369
BstDSI CCRYGG 2 cut(s) 685, 876
BstF5I GGATG 4 cut(s) 28, 1022, 1845, 2256
BstFNI CGCG 1 cut(s) 975
BstKTI GATC 9 cut(s) 247, 680, 961, 1521, 1743, 1819, 1995, 2068, 2265
BstMAI GTCTC 6 cut(s) 347, 555, 597, 1138, 1757, 2036
BstMBI GATC 9 cut(s) 244, 677, 958, 1518, 1740, 1816, 1992, 2065, 2262
BstMWI GCNNNNNNNGC 8 cut(s) 112, 551, 981, 1004, 1108, 1565, 2111, 2375
BstNI CCWGG 1 cut(s) 60
BstSCI CCNGG 1 cut(s) 58
BstSFI CTRYAG 4 cut(s) 576, 824, 1560, 2316
BstSNI TACGTA 3 cut(s) 269, 407, 2270
BstUI CGCG 1 cut(s) 975
BstX2I RGATCY 2 cut(s) 1992, 2262
BstYI RGATCY 2 cut(s) 1992, 2262
Bsu15I ATCGAT 1 cut(s) 957
BsuI GTATCC 1 cut(s) 1951
BsuRI GGCC 1 cut(s) 1102
BsuTUI ATCGAT 1 cut(s) 957
BtgI CCRYGG 2 cut(s) 685, 876
BtsCI GGATG 4 cut(s) 28, 1022, 1845, 2256
BtsIMutI CAGTG 5 cut(s) 240, 564, 1260, 1488, 1545
BtuMI TCGCGA 1 cut(s) 975
Cac8I GCNNGC 1 cut(s) 369
CaiI CAGNNNCTG 1 cut(s) 1568
CciI TCATGA 1 cut(s) 478
Cfr13I GGNCC 4 cut(s) 1100, 1196, 1265, 2099
ClaI ATCGAT 1 cut(s) 957
CseI GACGC 2 cut(s) 1778, 2339
Csp6I GTAC 3 cut(s) 573, 1171, 2150
CviAII CATG 8 cut(s) 479, 686, 877, 979, 1397, 1456, 1953, 2078
CviQI GTAC 3 cut(s) 573, 1171, 2150
DpnI GATC 9 cut(s) 246, 679, 960, 1520, 1742, 1818, 1994, 2067, 2264
DpnII GATC 9 cut(s) 244, 677, 958, 1518, 1740, 1816, 1992, 2065, 2262
DraI TTTAAA 1 cut(s) 906
Eam1104I CTCTTC 4 cut(s) 276, 513, 528, 837
EarI CTCTTC 4 cut(s) 276, 513, 528, 837
Ecl136II GAGCTC 2 cut(s) 643, 1007
Eco105I TACGTA 3 cut(s) 269, 407, 2270
Eco130I CCWWGG 5 cut(s) 685, 876, 1276, 1672, 1758
Eco24I GRGCYC 2 cut(s) 645, 1009
Eco47I GGWCC 3 cut(s) 1196, 1265, 2099
Eco53kI GAGCTC 2 cut(s) 643, 1007
Eco57I CTGAAG 2 cut(s) 576, 675
EcoICRI GAGCTC 2 cut(s) 643, 1007
EcoRI GAATTC 1 cut(s) 1062
EcoRII CCWGG 1 cut(s) 58
EcoT14I CCWWGG 5 cut(s) 685, 876, 1276, 1672, 1758
EcoT22I ATGCAT 1 cut(s) 117
EcoT38I GRGCYC 2 cut(s) 645, 1009
ErhI CCWWGG 5 cut(s) 685, 876, 1276, 1672, 1758
FaeI CATG 8 cut(s) 482, 689, 880, 982, 1400, 1459, 1956, 2081
FalI AAGNNNNNCTT 2 cut(s) 247, 279
FatI CATG 8 cut(s) 478, 685, 876, 978, 1396, 1455, 1952, 2077
FblI GTMKAC 1 cut(s) 820
FokI GGATG 4 cut(s) 35, 1009, 1832, 2263
FriOI GRGCYC 2 cut(s) 645, 1009
FspBI CTAG 4 cut(s) 1311, 1469, 1979, 2286
HaeIII GGCC 1 cut(s) 1102
HapII CCGG 3 cut(s) 860, 1059, 1693
HgaI GACGC 2 cut(s) 1778, 2339
Hin1I GRCGYC 2 cut(s) 1770, 2331
Hin1II CATG 8 cut(s) 482, 689, 880, 982, 1400, 1459, 1956, 2081
HincII GTYRAC 1 cut(s) 200
HindII GTYRAC 1 cut(s) 200
HindIII AAGCTT 5 cut(s) 81, 311, 1372, 1430, 2023
HinfI GANTC 5 cut(s) 1305, 1689, 1876, 1889, 2215
HpaII CCGG 3 cut(s) 860, 1059, 1693
HphI GGTGA 5 cut(s) 849, 1196, 1735, 1747, 2413
Hpy166II GTNNAC 5 cut(s) 200, 821, 857, 1162, 2329
Hpy8I GTNNAC 5 cut(s) 200, 821, 857, 1162, 2329
HpyCH4III ACNGT 8 cut(s) 197, 568, 745, 940, 1492, 1835, 1937, 2138
HpyCH4IV ACGT 4 cut(s) 268, 406, 421, 2269
HpyF10VI GCNNNNNNNGC 8 cut(s) 112, 551, 981, 1004, 1108, 1565, 2111, 2375
HpySE526I ACGT 4 cut(s) 268, 406, 421, 2269
Hsp92I GRCGYC 2 cut(s) 1770, 2331
Hsp92II CATG 8 cut(s) 482, 689, 880, 982, 1400, 1459, 1956, 2081
Kzo9I GATC 9 cut(s) 244, 677, 958, 1518, 1740, 1816, 1992, 2065, 2262
LmnI GCTCC 2 cut(s) 689, 1004
LweI GCATC 1 cut(s) 292
MaeI CTAG 4 cut(s) 1311, 1469, 1979, 2286
MaeII ACGT 4 cut(s) 268, 406, 421, 2269
MaeIII GTNAC 4 cut(s) 124, 269, 330, 2311
MalI GATC 9 cut(s) 246, 679, 960, 1520, 1742, 1818, 1994, 2067, 2264
MboI GATC 9 cut(s) 244, 677, 958, 1518, 1740, 1816, 1992, 2065, 2262
MflI RGATCY 2 cut(s) 1992, 2262
MhlI GDGCHC 2 cut(s) 645, 1009
MluCI AATT 6 cut(s) 50, 411, 772, 1062, 2166, 2227
MlyI GAGTC 1 cut(s) 1299
MmeI TCCRAC 7 cut(s) 1144, 1174, 1270, 1282, 1474, 1854, 2077
Mph1103I ATGCAT 1 cut(s) 117
MroXI GAANNNNTTC 1 cut(s) 795
MslI CAYNNNNRTG 2 cut(s) 1458, 2082
MspA1I CMGCKG 3 cut(s) 623, 1361, 1565
MspI CCGG 3 cut(s) 860, 1059, 1693
MspR9I CCNGG 1 cut(s) 60
MvaI CCWGG 1 cut(s) 60
MvnI CGCG 1 cut(s) 975
MwoI GCNNNNNNNGC 8 cut(s) 112, 551, 981, 1004, 1108, 1565, 2111, 2375
NcoI CCATGG 2 cut(s) 685, 876
NdeII GATC 9 cut(s) 244, 677, 958, 1518, 1740, 1816, 1992, 2065, 2262
NlaIII CATG 8 cut(s) 482, 689, 880, 982, 1400, 1459, 1956, 2081
NmuCI GTSAC 2 cut(s) 124, 330
NruI TCGCGA 1 cut(s) 975
NsiI ATGCAT 1 cut(s) 117
OliI CACNNNNGTG 1 cut(s) 1458
PagI TCATGA 1 cut(s) 478
PdmI GAANNNNTTC 1 cut(s) 795
PfeI GAWTC 4 cut(s) 1689, 1876, 1889, 2215
PleI GAGTC 1 cut(s) 1299
PpsI GAGTC 1 cut(s) 1299
Ppu21I YACGTR 3 cut(s) 269, 407, 2270
PshBI ATTAAT 2 cut(s) 1332, 2165
Psp124BI GAGCTC 2 cut(s) 645, 1009
Psp6I CCWGG 1 cut(s) 58
PspGI CCWGG 1 cut(s) 58
PspPI GGNCC 4 cut(s) 1100, 1196, 1265, 2099
PsrI GAACNNNNNNTAC 2 cut(s) 1154, 1186
PstI CTGCAG 3 cut(s) 828, 1564, 2320
PstNI CAGNNNCTG 1 cut(s) 1568
PsuI RGATCY 2 cut(s) 1992, 2262
PvuII CAGCTG 3 cut(s) 623, 1361, 1565
RruI TCGCGA 1 cut(s) 975
RsaI GTAC 3 cut(s) 574, 1172, 2151
RsaNI GTAC 3 cut(s) 573, 1171, 2150
RseI CAYNNNNRTG 2 cut(s) 1458, 2082
SacI GAGCTC 2 cut(s) 645, 1009
Sau3AI GATC 9 cut(s) 244, 677, 958, 1518, 1740, 1816, 1992, 2065, 2262
Sau96I GGNCC 4 cut(s) 1100, 1196, 1265, 2099
SchI GAGTC 1 cut(s) 1299
ScrFI CCNGG 1 cut(s) 60
SduI GDGCHC 2 cut(s) 645, 1009
SfaNI GCATC 1 cut(s) 292
SfcI CTRYAG 4 cut(s) 576, 824, 1560, 2316
SinI GGWCC 3 cut(s) 1196, 1265, 2099
SmiMI CAYNNNNRTG 2 cut(s) 1458, 2082
SmlI CTYRAG 1 cut(s) 594
SmoI CTYRAG 1 cut(s) 594
SnaBI TACGTA 3 cut(s) 269, 407, 2270
Sse9I AATT 6 cut(s) 50, 411, 772, 1062, 2166, 2227
SsiI CCGC 5 cut(s) 487, 1073, 1292, 1414, 1967
SspI AATATT 1 cut(s) 361
SspMI CTAG 4 cut(s) 1311, 1469, 1979, 2286
SstI GAGCTC 2 cut(s) 645, 1009
StyD4I CCNGG 1 cut(s) 58
StyI CCWWGG 5 cut(s) 685, 876, 1276, 1672, 1758
TaaI ACNGT 8 cut(s) 197, 568, 745, 940, 1492, 1835, 1937, 2138
TaiI ACGT 4 cut(s) 271, 409, 424, 2272
TasI AATT 6 cut(s) 50, 411, 772, 1062, 2166, 2227
TatI WGTACW 1 cut(s) 2149
TfiI GAWTC 4 cut(s) 1689, 1876, 1889, 2215
TscAI CASTG 5 cut(s) 247, 571, 1267, 1495, 1552
TseFI GTSAC 2 cut(s) 124, 330
Tsp45I GTSAC 2 cut(s) 124, 330
TspDTI ATGAA 6 cut(s) 495, 546, 1427, 1941, 2094, 2187
TspGWI ACGGA 1 cut(s) 619
TspRI CASTG 5 cut(s) 247, 571, 1267, 1495, 1552
VpaK11BI GGWCC 3 cut(s) 1196, 1265, 2099
VspI ATTAAT 2 cut(s) 1332, 2165
XapI RAATTY 3 cut(s) 772, 1062, 2227
XcmI CCANNNNNNNNNTGG 1 cut(s) 1372
XmiI GTMKAC 1 cut(s) 820
XmnI GAANNNNTTC 1 cut(s) 795
XspI CTAG 4 cut(s) 1311, 1469, 1979, 2286
Zsp2I ATGCAT 1 cut(s) 117
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.