Basic Information

Type: Sequence Only

Biological Identity

Species

rosa_samantha

Chromosome

Unknown

Orthogroup ID

OG0008636

Physical Location & Seq

Genomic Coordinates Reverse (-)

0 .. 0

Gene Structure 1 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7DG297700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2445 bp

ATGGCTGAAAGCTGGCAGGGGAGTTATGACGCCGGCAGCCAGTCAGATGACAGCTATAGATTTGAGAGGCTGCTGCACATTGAGCCTATTTATGATTCATTCTTTTGCCCCTTAACGAAGCAAGTTATGCGGGACCCCGTTACCTTAGAAAATGGGCAAACATTTGAACGCGAAGCAATTGAAAAGTGGTTCAGGGAGTGCAAGGAGAGTGGAAAGAATTTACAGTGCCCACTCACACTAAGAGAATTAAAAAGCGCTGAATTGAAGCCGAGCATAGCTTTGCGAAACACCATTGAAGAGTGGAGTGCTAGGAATGAAGCTGCTCAGCTTGATATGGCTCGTAAATCATTGAATTCGAGCAGTTCAGAAGATGATATTCTTTTGGCCTTGGAGTATGTCCAGCAAATCTGCAAGAAAAGCAGATCAAATAAGCACATTGCACGAAATGCAGGATTGTTGCCCATGATCATTGACATGTTGAAGAGCAGCAGTCGTAGAGTTAGGTGTAAATCTTTGGACACCCTAAGAATTGTTGTAGAGGACGATTCTGAAAATAAGGAAATATTGGCAGAGGGGGACACTGTACGCTCAATAGTAAAGTTCTTGTCTCATGAGCAATCTAAAGAGAGAGAGGAAGCTGTCTGTTTGCTATATGAACTATCCAAATCCGAAGCCTTATGTGAGAAGATTGGTTCAATTCCCGGAGCAATTCTTATGTTGGTTGGAATGACAAGCAGCAAATCAGATAACGTTTTGACTGTTGAGAACGCTGAGAGAACATTAGAGAATCTGGAGAAGTGTGAGAACAATGTGCTTCAGATGGCTGGAAATGGTAGACTGCAGGCTCTTCTGACACAAATTCTTGAAGGCCCCCCAGAAACTAAACTATCGATGGCTAATTTCCTTGGCAACCTGGTTTTGGACAATGATGTAAAGGTCCAAGTGGCTAAAAGTCTGGGTTCATCTTTGATCAATATCATGAGAAGTGGTAATATGCAGTCAAGAGAAGCTGCTTTGAAAGCTCTAAACCAAATTTCATCTTGTGAGGCAAGTGCCAAGGTGCTGATAGAGGCAGGAATACTTCCATCTCTGGTCAAAGACCTCTTTACTGTTGGCCCTCATCAGCTTCCTATGCGACTCAAAGAGGTTGCTGCAACAATTCTTGCTAATATTGTTTACTCAGACTATGACTTTGATTCCATATTAGTTGGACCTGATCACCAGACTCTAGTCTCAGAAGACATAGTCCATAACCTACTACATTTAATTAGCAACACAGGCCCAGCAATCGAGTGCAAGCTTCTCCAGGTTCTTGTTGGACTCACTGGCTCTCCCTCTACTGTTTTGAGTGTTGTTGCCGCCATTAAAAGCTCTGGCGCCATTATTAGTTTGGTGCAGTTTATTGAAGCTCCACAAAAGGAGTTGCGTGTGGCTTGCATTAAACTTCTCCAAAATCTCTCCCCACACGTGGGTCAGGAACTAGCTGACGCTCTACGTGGCACAGTGGGCCAACTTGGCAGCCTAATCAAAGTAATATCAGAAAATATTTCAGTCACTGACGAGCAAGCAGCAGCCATTGCCCTCTTAGCTGAACTTCCGGAGAGGGATCTGGGCCTCGCCCGACAAATGCTAGATGAAGGTGCCTTCCAACTGGTGTTTTCCAGAGTAGTTAAGATACGACAAGGAGGGACTAAGGGGGGCCGCTTTATCACACCATTTCTAGAAGGGCTTGTACGGGTTCTAGCAAGGGTTACTCTTGTGTTGGCTGAAGAGCAAGATGCAATTACACTCTGCCGTGAGCTTAATGTTGCAGCCCTTTTCATTGAGCTTCTTCAATCCAATGGACTGGACAATGTACAGATGAGTTCTGCCGCAGCATTGGAGAACTTATCACAAGAATCCAAAAATTTGACAAAATTTCCCGAGTTGCCTACCCCTGGTGTTTGTGCCTCAATTTTCCCATGCTTTAGCAAGCAACCTACCATAAATGGACTGTGTCGGCTTCACCGTGGCACATGCTCACTTAGAGAAAGTTTTTGTCTCTTGGAAGGACAGGCTGTGGACAAATTGGTAGCTCTTCTTGACCACACAAATGAGAAGGTGGTTGAAGCAGCCCTTGCAGCATTGTCTACTTTGTTGGATGATGGGGTTGATATCGAACAAGGGGTTTTGGTATTGTGTGAAGCAGAGGGAGTCAGACCCATTCTAGATGTGTTACTAGAGAAACGGACAGAGAATCTGAGGAGGAGGGCAGTTTGGGTAGTTGAGAGACTATTGCGGAGCGATGAGATAGCCTATGAAGTGTCTGGAGATCCAAATGTGAGTACCGCACTTGTTGATGCATTCCAGCATGGTGACTATCGAACCCGACAGATTGCCGAACGTGCTTTGAAGCATGTTGACAGGTTACCAAACTTCTCTGGAGTGTTTCCAAGTGCAGGATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0005102 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005886 GO:0006464 GO:0006807 GO:0007275 GO:0007568 GO:0008150 GO:0008152 GO:0009889 GO:0009890 GO:0009892 GO:0009894 GO:0009987 GO:0010115 GO:0010150 GO:0010271 GO:0010380 GO:0010565 GO:0016020 GO:0016567 GO:0016740 GO:0019216 GO:0019222 GO:0019538 GO:0019747 GO:0019787 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031329 GO:0032446 GO:0032501 GO:0032502 GO:0033612 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043455 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0045827 GO:0045833 GO:0046890 GO:0048366 GO:0048367 GO:0048519 GO:0048523 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0051055 GO:0051171 GO:0051193 GO:0062012 GO:0062014 GO:0065007 GO:0070647 GO:0070696 GO:0071704 GO:0071944 GO:0080090 GO:0090056 GO:0090359 GO:0090693 GO:0099402 GO:0140096 GO:1901401 GO:1901404 GO:1901463 GO:1901564 GO:1902930 GO:1902931

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Arm U-box

Protein Analysis

814

Amino Acids

89.34

Weight (kDa)

5.25

Isoelectric Point (pI)

45.63

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
U-box	PF04564	32 - 106	1.6e-14	U-box domain
ARM_PUB	PF25598	115 - 222	8.8e-06	Plant U-box protein ARM repeat region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008636)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G20780 AT1G20780 AT1G20780 AT1G76390 AT1G76390
fragaria_vesca	FvH4_5g25630 FvH4_5g25630
malus_domestica	MD00G1113800.v1.1 MD06G1007200.v1.1
prunus_persica	Prupe.5G009100_v2.0.a1 Prupe.5G009100_v2.0.a1
pyrus_communis	pycom06g00630 pycom16g26080
rosa_chinensis	RchiOBHm_Chr7g0215921
rosa_laevigata	RLG00000002607
rosa_multiflora	Rmu_sc0006240.1_g000004
rosa_roxburghii	Rroxscaffold_3G00243800
rosa_rugosa	Rorug07G0156800
rosa_samantha	Rh7AG294900 Rh7BG286900 Rh7CG315000 Rh7DG297700
rosa_wichuraiana	Rw7G025050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	1376, 1640
AccI	GTMKAC	2 cut(s)	835, 2129
AccII	CGCG	1 cut(s)	171
AccIII	TCCGGA	1 cut(s)	1597
AciI	CCGC	6 cut(s)	130, 1359, 1702, 1872, 2278, 2328
AclI	AACGTT	1 cut(s)	750
AclWI	GGATC	2 cut(s)	1614, 2306
AcsI	RAATTY	6 cut(s)	217, 352, 858, 1032, 1906, 1916
AcuI	CTGAAG	2 cut(s)	800, 1788
AcvI	CACGTG	1 cut(s)	1468
AcyI	GRCGYC	2 cut(s)	30, 1377
AfaI	GTAC	4 cut(s)	585, 1734, 1857, 2326
AfeI	AGCGCT	1 cut(s)	256
AfiI	CCNNNNNNNGG	5 cut(s)	919, 1468, 1469, 1937, 2438
AflIII	ACRYGT	2 cut(s)	474, 1465
AjnI	CCWGG	3 cut(s)	912, 1305, 1936
Alw26I	GTCTC	4 cut(s)	612, 1237, 2045, 2263
AlwI	GGATC	2 cut(s)	1614, 2306
AlwNI	CAGNNNCTG	1 cut(s)	1556
Ama87I	CYCGRG	1 cut(s)	1922
Aor13HI	TCCGGA	1 cut(s)	1597
Aor51HI	AGCGCT	1 cut(s)	256
AoxI	GGCC	7 cut(s)	384, 868, 1114, 1279, 1507, 1612, 1699
ApoI	RAATTY	6 cut(s)	217, 352, 858, 1032, 1906, 1916
ArsI	GACNNNNNNTTYG	2 cut(s)	1175, 1207
AspLEI	GCGC	2 cut(s)	257, 1379
AspS9I	GGNCC	9 cut(s)	133, 869, 937, 1115, 1211, 1280, 1507, 1612, 1699
AsuC2I	CCSGG	1 cut(s)	702
AsuHPI	GGTGA	3 cut(s)	1211, 1997, 2366
AvaI	CYCGRG	1 cut(s)	1922
AvaII	GGWCC	3 cut(s)	133, 937, 1211
BaeGI	GKGCMC	1 cut(s)	230
BanI	GGYRCC	2 cut(s)	1376, 1640
BarI	GAAGNNNNNNTAC	2 cut(s)	1716, 1748
BbrPI	CACGTG	1 cut(s)	1468
BbsI	GAAGAC	1 cut(s)	1245
BccI	CCATC	4 cut(s)	814, 886, 1093, 2138
BceAI	ACGGC	1 cut(s)	1779
BciT130I	CCWGG	3 cut(s)	914, 1307, 1938
BclI	TGATCA	3 cut(s)	465, 969, 1216
BcnI	CCSGG	1 cut(s)	702
BcoDI	GTCTC	4 cut(s)	612, 1237, 2045, 2263
BfaI	CTAG	8 cut(s)	309, 1229, 1481, 1631, 1721, 1742, 2207, 2219
BfmI	CTRYAG	2 cut(s)	55, 839
BfoI	RGCGCY	2 cut(s)	258, 1380
BglI	GCCNNNNNGGC	1 cut(s)	1515
BlpI	GCTNAGC	1 cut(s)	324
Bme1390I	CCNGG	4 cut(s)	702, 914, 1307, 1938
Bme18I	GGWCC	3 cut(s)	133, 937, 1211
BmeT110I	CYCGRG	1 cut(s)	1922
BmgT120I	GGNCC	9 cut(s)	133, 869, 937, 1115, 1211, 1280, 1507, 1612, 1699
BmiI	GGNNCC	6 cut(s)	134, 135, 871, 1378, 1642, 1700
BmrFI	CCNGG	4 cut(s)	702, 914, 1307, 1938
BmsI	GCATC	2 cut(s)	1768, 2329
BoxI	GACNNNNGTC	1 cut(s)	1229
BpiI	GAAGAC	1 cut(s)	1245
BpmI	CTGGAG	4 cut(s)	812, 1289, 2328, 2442
Bpu1102I	GCTNAGC	1 cut(s)	324
BpuMI	CCSGG	1 cut(s)	702
Bsa29I	ATCGAT	1 cut(s)	890
BsaAI	YACGTR	2 cut(s)	1468, 1496
BsaBI	GATNNNNATC	1 cut(s)	974
BsaHI	GRCGYC	2 cut(s)	30, 1377
BsaJI	CCNNGG	5 cut(s)	387, 904, 1056, 1936, 2008
BsaWI	WCCGGW	1 cut(s)	1597
BsaXI	ACNNNNNCTCC	2 cut(s)	1315, 1345
Bsc4I	CCNNNNNNNGG	5 cut(s)	919, 1468, 1469, 1937, 2438
Bse118I	RCCGGY	1 cut(s)	32
Bse1I	ACTGG	4 cut(s)	40, 1330, 1656, 1851
Bse3DI	GCAATG	2 cut(s)	435, 1575
Bse8I	GATNNNNATC	1 cut(s)	974
BseAI	TCCGGA	1 cut(s)	1597
BseBI	CCWGG	3 cut(s)	914, 1307, 1938
BseCI	ATCGAT	1 cut(s)	890
BseDI	CCNNGG	5 cut(s)	387, 904, 1056, 1936, 2008
BseGI	GGATG	1 cut(s)	2146
BseJI	GATNNNNATC	1 cut(s)	974
BseLI	CCNNNNNNNGG	5 cut(s)	919, 1468, 1469, 1937, 2438
BseMI	GCAATG	2 cut(s)	435, 1575
BseMII	CTCAG	5 cut(s)	338, 762, 1194, 1248, 2231
BseNI	ACTGG	4 cut(s)	40, 1330, 1656, 1851
BseRI	GAGGAG	2 cut(s)	2257, 2260
BseSI	GKGCMC	1 cut(s)	230
BseYI	CCCAGC	1 cut(s)	1282
BsgI	GTGCAG	2 cut(s)	59, 1415
Bsh1236I	CGCG	1 cut(s)	171
BshFI	GGCC	7 cut(s)	386, 870, 1116, 1281, 1509, 1614, 1701
BshNI	GGYRCC	2 cut(s)	1376, 1640
BshVI	ATCGAT	1 cut(s)	890
BsiHKCI	CYCGRG	1 cut(s)	1922
BsiSI	CCGG	3 cut(s)	33, 702, 1598
BslFI	GGGAC	3 cut(s)	146, 590, 1702
BslI	CCNNNNNNNGG	5 cut(s)	919, 1468, 1469, 1937, 2438
BsmAI	GTCTC	4 cut(s)	612, 1237, 2045, 2263
BsmFI	GGGAC	3 cut(s)	146, 590, 1702
BsmI	GAATGC	1 cut(s)	2342
BsnI	GGCC	7 cut(s)	386, 870, 1116, 1281, 1509, 1614, 1701
BsoBI	CYCGRG	1 cut(s)	1922
Bsp1286I	GDGCHC	1 cut(s)	230
Bsp13I	TCCGGA	1 cut(s)	1597
Bsp1407I	TGTACA	1 cut(s)	1855
Bsp143I	GATC	6 cut(s)	422, 465, 969, 1216, 1606, 2311
Bsp1720I	GCTNAGC	1 cut(s)	324
BspACI	CCGC	6 cut(s)	130, 1359, 1702, 1872, 2278, 2328
BspANI	GGCC	7 cut(s)	386, 870, 1116, 1281, 1509, 1614, 1701
BspCNI	CTCAG	5 cut(s)	337, 763, 1193, 1247, 2232
BspDI	ATCGAT	1 cut(s)	890
BspEI	TCCGGA	1 cut(s)	1597
BspFNI	CGCG	1 cut(s)	171
BspHI	TCATGA	2 cut(s)	610, 978
BspLI	GGNNCC	6 cut(s)	134, 135, 871, 1378, 1642, 1700
BspMAI	CTGCAG	1 cut(s)	843
BspPI	GGATC	2 cut(s)	1614, 2306
BspQI	GCTCTTC	4 cut(s)	476, 852, 1764, 2082
BspT107I	GGYRCC	2 cut(s)	1376, 1640
BsrDI	GCAATG	2 cut(s)	435, 1575
BsrFI	RCCGGY	1 cut(s)	32
BsrGI	TGTACA	1 cut(s)	1855
BsrI	ACTGG	4 cut(s)	40, 1330, 1656, 1851
BssAI	RCCGGY	1 cut(s)	32
BssECI	CCNNGG	5 cut(s)	387, 904, 1056, 1936, 2008
BssMI	GATC	6 cut(s)	422, 465, 969, 1216, 1606, 2311
BssNI	GRCGYC	2 cut(s)	30, 1377
BssT1I	CCWWGG	3 cut(s)	387, 904, 1056
Bst2UI	CCWGG	3 cut(s)	914, 1307, 1938
Bst4CI	ACNGT	8 cut(s)	225, 583, 760, 1111, 1342, 1504, 1995, 2009
Bst6I	CTCTTC	5 cut(s)	291, 476, 852, 1764, 2082
BstACI	GRCGYC	2 cut(s)	30, 1377
BstAPI	GCANNNNNTGC	4 cut(s)	127, 446, 1577, 2117
BstAUI	TGTACA	1 cut(s)	1855
BstBAI	YACGTR	2 cut(s)	1468, 1496
BstC8I	GCNNGC	7 cut(s)	14, 34, 843, 1298, 1435, 1566, 1973
BstDSI	CCRYGG	1 cut(s)	2008
BstEII	GGTNACC	1 cut(s)	2406
BstF5I	GGATG	1 cut(s)	2146
BstFNI	CGCG	1 cut(s)	171
BstH2I	RGCGCY	2 cut(s)	258, 1380
BstHHI	GCGC	2 cut(s)	257, 1379
BstKTI	GATC	6 cut(s)	425, 468, 972, 1219, 1609, 2314
BstMAI	GTCTC	4 cut(s)	612, 1237, 2045, 2263
BstMBI	GATC	6 cut(s)	422, 465, 969, 1216, 1606, 2311
BstNI	CCWGG	3 cut(s)	914, 1307, 1938
BstNSI	RCATGY	3 cut(s)	478, 2019, 2399
BstPAI	GACNNNNGTC	1 cut(s)	1229
BstPI	GGTNACC	1 cut(s)	2406
BstSCI	CCNGG	4 cut(s)	700, 912, 1305, 1936
BstSFI	CTRYAG	2 cut(s)	55, 839
BstSLI	GKGCMC	1 cut(s)	230
BstUI	CGCG	1 cut(s)	171
BstV2I	GAAGAC	1 cut(s)	1245
BstX2I	RGATCY	2 cut(s)	1606, 2311
BstXI	CCANNNNNNTGG	1 cut(s)	1846
BstYI	RGATCY	2 cut(s)	1606, 2311
Bsu15I	ATCGAT	1 cut(s)	890
BsuRI	GGCC	7 cut(s)	386, 870, 1116, 1281, 1509, 1614, 1701
BsuTUI	ATCGAT	1 cut(s)	890
BtgI	CCRYGG	1 cut(s)	2008
BtgZI	GCGATG	1 cut(s)	2298
BtsCI	GGATG	1 cut(s)	2146
BtsIMutI	CAGTG	5 cut(s)	230, 579, 1323, 1509, 1554
Cac8I	GCNNGC	7 cut(s)	14, 34, 843, 1298, 1435, 1566, 1973
CaiI	CAGNNNCTG	1 cut(s)	1556
CciI	TCATGA	2 cut(s)	610, 978
CfoI	GCGC	2 cut(s)	257, 1379
Cfr10I	RCCGGY	1 cut(s)	32
Cfr13I	GGNCC	9 cut(s)	133, 869, 937, 1115, 1211, 1280, 1507, 1612, 1699
ClaI	ATCGAT	1 cut(s)	890
CseI	GACGC	2 cut(s)	38, 1496
CsiI	ACCWGGT	1 cut(s)	912
Csp6I	GTAC	4 cut(s)	584, 1733, 1856, 2325
CspCI	CAANNNNNGTGG	2 cut(s)	190, 225
CviAII	CATG	8 cut(s)	463, 475, 611, 979, 1962, 2016, 2351, 2396
CviQI	GTAC	4 cut(s)	584, 1733, 1856, 2325
DinI	GGCGCC	1 cut(s)	1378
DpnI	GATC	6 cut(s)	424, 467, 971, 1218, 1608, 2313
DpnII	GATC	6 cut(s)	422, 465, 969, 1216, 1606, 2311
Eam1104I	CTCTTC	5 cut(s)	291, 476, 852, 1764, 2082
EarI	CTCTTC	5 cut(s)	291, 476, 852, 1764, 2082
Eco130I	CCWWGG	3 cut(s)	387, 904, 1056
Eco32I	GATATC	1 cut(s)	2155
Eco47I	GGWCC	3 cut(s)	133, 937, 1211
Eco47III	AGCGCT	1 cut(s)	256
Eco57I	CTGAAG	2 cut(s)	800, 1788
Eco72I	CACGTG	1 cut(s)	1468
Eco88I	CYCGRG	1 cut(s)	1922
Eco91I	GGTNACC	1 cut(s)	2406
EcoO109I	RGGNCCY	2 cut(s)	133, 869
EcoO65I	GGTNACC	1 cut(s)	2406
EcoRI	GAATTC	1 cut(s)	352
EcoRII	CCWGG	3 cut(s)	912, 1305, 1936
EcoRV	GATATC	1 cut(s)	2155
EcoT14I	CCWWGG	3 cut(s)	387, 904, 1056
EcoT22I	ATGCAT	1 cut(s)	2344
EgeI	GGCGCC	1 cut(s)	1378
EheI	GGCGCC	1 cut(s)	1378
ErhI	CCWWGG	3 cut(s)	387, 904, 1056
FaeI	CATG	8 cut(s)	466, 478, 614, 982, 1965, 2019, 2354, 2399
FalI	AAGNNNNNCTT	2 cut(s)	2100, 2132
FaqI	GGGAC	3 cut(s)	146, 590, 1702
FatI	CATG	8 cut(s)	462, 474, 610, 978, 1961, 2015, 2350, 2395
FauI	CCCGC	1 cut(s)	123
FbaI	TGATCA	3 cut(s)	465, 969, 1216
FblI	GTMKAC	2 cut(s)	835, 2129
FokI	GGATG	1 cut(s)	2153
FspBI	CTAG	8 cut(s)	309, 1229, 1481, 1631, 1721, 1742, 2207, 2219
GlaI	GCGC	2 cut(s)	256, 1378
GsaI	CCCAGC	1 cut(s)	1286
GsuI	CTGGAG	4 cut(s)	812, 1289, 2328, 2442
HaeII	RGCGCY	2 cut(s)	258, 1380
HaeIII	GGCC	7 cut(s)	386, 870, 1116, 1281, 1509, 1614, 1701
HapII	CCGG	3 cut(s)	33, 702, 1598
HgaI	GACGC	2 cut(s)	38, 1496
HhaI	GCGC	2 cut(s)	257, 1379
Hin1I	GRCGYC	2 cut(s)	30, 1377
Hin1II	CATG	8 cut(s)	466, 478, 614, 982, 1965, 2019, 2354, 2399
Hin6I	GCGC	2 cut(s)	255, 1377
HinP1I	GCGC	2 cut(s)	255, 1377
HincII	GTYRAC	1 cut(s)	2401
HindII	GTYRAC	1 cut(s)	2401
HindIII	AAGCTT	1 cut(s)	1298
HpaII	CCGG	3 cut(s)	33, 702, 1598
HphI	GGTGA	3 cut(s)	1211, 1997, 2366
Hpy166II	GTNNAC	5 cut(s)	836, 1177, 2062, 2130, 2401
Hpy8I	GTNNAC	5 cut(s)	836, 1177, 2062, 2130, 2401
HpyAV	CCTTC	6 cut(s)	860, 1631, 1654, 1718, 2042, 2092
HpyCH4III	ACNGT	8 cut(s)	225, 583, 760, 1111, 1342, 1504, 1995, 2009
HpyCH4IV	ACGT	4 cut(s)	750, 1467, 1495, 2383
HpySE526I	ACGT	4 cut(s)	750, 1467, 1495, 2383
Hsp92I	GRCGYC	2 cut(s)	30, 1377
Hsp92II	CATG	8 cut(s)	466, 478, 614, 982, 1965, 2019, 2354, 2399
HspAI	GCGC	2 cut(s)	255, 1377
KasI	GGCGCC	1 cut(s)	1376
KflI	GGGWCCC	1 cut(s)	133
Kpn2I	TCCGGA	1 cut(s)	1597
KroI	GCCGGC	1 cut(s)	32
KroNI	GCCGGC	1 cut(s)	34
Ksp22I	TGATCA	3 cut(s)	465, 969, 1216
Kzo9I	GATC	6 cut(s)	422, 465, 969, 1216, 1606, 2311
LguI	GCTCTTC	4 cut(s)	476, 852, 1764, 2082
LmnI	GCTCC	3 cut(s)	704, 1414, 2280
LweI	GCATC	2 cut(s)	1768, 2329
MabI	ACCWGGT	1 cut(s)	912
MaeI	CTAG	8 cut(s)	309, 1229, 1481, 1631, 1721, 1742, 2207, 2219
MaeII	ACGT	4 cut(s)	750, 1467, 1495, 2383
MaeIII	GTNAC	6 cut(s)	139, 1552, 1750, 2214, 2354, 2406
MalI	GATC	6 cut(s)	424, 467, 971, 1218, 1608, 2313
MboI	GATC	6 cut(s)	422, 465, 969, 1216, 1606, 2311
MboII	GAAGA	9 cut(s)	308, 380, 493, 697, 839, 1250, 1781, 1823, 2069
MfeI	CAATTG	1 cut(s)	177
MflI	RGATCY	2 cut(s)	1606, 2311
MhlI	GDGCHC	1 cut(s)	230
Mly113I	GGCGCC	1 cut(s)	1377
MlyI	GAGTC	4 cut(s)	1131, 1219, 1314, 2202
MmeI	TCCRAC	5 cut(s)	703, 1189, 1297, 1672, 2118
Mph1103I	ATGCAT	1 cut(s)	2344
MroI	TCCGGA	1 cut(s)	1597
MroNI	GCCGGC	1 cut(s)	32
MseI	TTAA	7 cut(s)	113, 248, 1265, 1365, 1440, 1671, 1803
MslI	CAYNNNNRTG	2 cut(s)	473, 2091
MspI	CCGG	3 cut(s)	33, 702, 1598
MspR9I	CCNGG	4 cut(s)	702, 914, 1307, 1938
MunI	CAATTG	1 cut(s)	177
Mva1269I	GAATGC	1 cut(s)	2342
MvaI	CCWGG	3 cut(s)	914, 1307, 1938
MvnI	CGCG	1 cut(s)	171
NaeI	GCCGGC	1 cut(s)	34
NarI	GGCGCC	1 cut(s)	1377
NciI	CCSGG	1 cut(s)	702
NdeII	GATC	6 cut(s)	422, 465, 969, 1216, 1606, 2311
NgoMIV	GCCGGC	1 cut(s)	32
NlaIII	CATG	8 cut(s)	466, 478, 614, 982, 1965, 2019, 2354, 2399
NlaIV	GGNNCC	6 cut(s)	134, 135, 871, 1378, 1642, 1700
NmeAIII	GCCGAG	1 cut(s)	294
NmuCI	GTSAC	2 cut(s)	1552, 2354
NsiI	ATGCAT	1 cut(s)	2344
NspI	RCATGY	3 cut(s)	478, 2019, 2399
PagI	TCATGA	2 cut(s)	610, 978
PciI	ACATGT	1 cut(s)	474
PciSI	GCTCTTC	4 cut(s)	476, 852, 1764, 2082
PcsI	WCGNNNNNNNCGW	1 cut(s)	2005
PctI	GAATGC	1 cut(s)	2342
PdiI	GCCGGC	1 cut(s)	34
PfeI	GAWTC	6 cut(s)	95, 545, 787, 1196, 1898, 2236
PflFI	GACNNNGTC	2 cut(s)	1244, 1995
PfoI	TCCNGGA	1 cut(s)	700
PleI	GAGTC	4 cut(s)	1131, 1219, 1314, 2201
PluTI	GGCGCC	1 cut(s)	1380
PmaCI	CACGTG	1 cut(s)	1468
PmlI	CACGTG	1 cut(s)	1468
PpsI	GAGTC	4 cut(s)	1131, 1219, 1314, 2201
Ppu21I	YACGTR	2 cut(s)	1468, 1496
PpuMI	RGGWCCY	1 cut(s)	133
PscI	ACATGT	1 cut(s)	474
PshAI	GACNNNNGTC	1 cut(s)	1229
Psp1406I	AACGTT	1 cut(s)	750
Psp5II	RGGWCCY	1 cut(s)	133
Psp6I	CCWGG	3 cut(s)	912, 1305, 1936
PspCI	CACGTG	1 cut(s)	1468
PspEI	GGTNACC	1 cut(s)	2406
PspFI	CCCAGC	1 cut(s)	1282
PspGI	CCWGG	3 cut(s)	912, 1305, 1936
PspN4I	GGNNCC	6 cut(s)	134, 135, 871, 1378, 1642, 1700
PspPI	GGNCC	9 cut(s)	133, 869, 937, 1115, 1211, 1280, 1507, 1612, 1699
PspPPI	RGGWCCY	1 cut(s)	133
PstI	CTGCAG	1 cut(s)	843
PstNI	CAGNNNCTG	1 cut(s)	1556
PsuI	RGATCY	2 cut(s)	1606, 2311
PsyI	GACNNNGTC	2 cut(s)	1244, 1995
RsaI	GTAC	4 cut(s)	585, 1734, 1857, 2326
RsaNI	GTAC	4 cut(s)	584, 1733, 1856, 2325
RseI	CAYNNNNRTG	2 cut(s)	473, 2091
SapI	GCTCTTC	4 cut(s)	476, 852, 1764, 2082
SaqAI	TTAA	7 cut(s)	113, 248, 1265, 1365, 1440, 1671, 1803
Sau3AI	GATC	6 cut(s)	422, 465, 969, 1216, 1606, 2311
Sau96I	GGNCC	9 cut(s)	133, 869, 937, 1115, 1211, 1280, 1507, 1612, 1699
SchI	GAGTC	4 cut(s)	1131, 1219, 1314, 2202
ScrFI	CCNGG	4 cut(s)	702, 914, 1307, 1938
SduI	GDGCHC	1 cut(s)	230
SexAI	ACCWGGT	1 cut(s)	912
SfaNI	GCATC	2 cut(s)	1768, 2329
SfcI	CTRYAG	2 cut(s)	55, 839
SfoI	GGCGCC	1 cut(s)	1378
SinI	GGWCC	3 cut(s)	133, 937, 1211
SmiMI	CAYNNNNRTG	2 cut(s)	473, 2091
SsiI	CCGC	6 cut(s)	130, 1359, 1702, 1872, 2278, 2328
SspDI	GGCGCC	1 cut(s)	1376
SspI	AATATT	3 cut(s)	564, 1171, 1546
SspMI	CTAG	8 cut(s)	309, 1229, 1481, 1631, 1721, 1742, 2207, 2219
StyD4I	CCNGG	4 cut(s)	700, 912, 1305, 1936
StyI	CCWWGG	3 cut(s)	387, 904, 1056
TaaI	ACNGT	8 cut(s)	225, 583, 760, 1111, 1342, 1504, 1995, 2009
TaiI	ACGT	4 cut(s)	753, 1470, 1498, 2386
TaqI	TCGA	5 cut(s)	356, 890, 1290, 2157, 2362
TatI	WGTACW	1 cut(s)	1855
TauI	GCSGC	3 cut(s)	1361, 1704, 1874
TfiI	GAWTC	6 cut(s)	95, 545, 787, 1196, 1898, 2236
Tru1I	TTAA	7 cut(s)	113, 248, 1265, 1365, 1440, 1671, 1803
Tru9I	TTAA	7 cut(s)	113, 248, 1265, 1365, 1440, 1671, 1803
TscAI	CASTG	5 cut(s)	230, 586, 1330, 1509, 1561
TseFI	GTSAC	2 cut(s)	1552, 2354
Tsp45I	GTSAC	2 cut(s)	1552, 2354
TspDTI	ATGAA	8 cut(s)	87, 330, 669, 951, 1026, 1650, 1810, 2313
TspGWI	ACGGA	1 cut(s)	2242
TspRI	CASTG	5 cut(s)	230, 586, 1330, 1509, 1561
Tth111I	GACNNNGTC	2 cut(s)	1244, 1995
VpaK11BI	GGWCC	3 cut(s)	133, 937, 1211
XapI	RAATTY	6 cut(s)	217, 352, 858, 1032, 1906, 1916
XbaI	TCTAGA	2 cut(s)	1720, 2206
XceI	RCATGY	3 cut(s)	478, 2019, 2399
XcmI	CCANNNNNNNNNTGG	2 cut(s)	1313, 1387
XmiI	GTMKAC	2 cut(s)	835, 2129
XspI	CTAG	8 cut(s)	309, 1229, 1481, 1631, 1721, 1742, 2207, 2219
Zsp2I	ATGCAT	1 cut(s)	2344

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.