Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr06

Orthogroup ID

OG0008636

Physical Location & Seq

Genomic Coordinates Reverse (-)

728836 .. 733503

Gene Structure 4668 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD06G1007200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2547 bp

ATGCTTTCCTCAACCCCTATTCAAAATTTGTCTGCAATTCTCAGACCTAAATTAGAACACCATCTTTGGCCACCACAGCTCCATAACTACTCAAAGGAGGATTTAGGTCAGATGGCTGAAAGTTGGCATGGAAATTATGACACCGGCAGTCCATCAGATGACAGCCATAAGTTTGAGCGATTGCACATCGAGCCTATTTATGATGCATTTTTTTGTCCTTTAACAAAGCAAGTTATGCGCGATCCTGTTACCTTAGAAAACGGCCAAACATTTGAGCGAGAAGCAATTGAAAAGTGGTTTAGGGAATGCAAGGAGAGTGGAAGGAAGTTGGTCTGCCCACTGACACTAAAAGAATTGAAAAGAGGTGATCTAAAGCCTAGCATAGCATTGAGGAACACCATTGAAGAGTGGAATGCCAGAAATGAAGCTGCTCAGCTTGATATGGCTCGTAAGTCATTGAATCTGAGCAGCTCAGAAAGTGAAGTTCTTTTGGCCTTGAAGTTTGTCCAGCAAATCTGCCAAAAAACAAGATCAAATAAGCATGTTGCACGCAATGCAGGGCTGATACCTATGATAGTTGACATGTTGAAGAGCAGCAGTCGTAAAGTAAGGTGCAAAGCTTTGGAAACCCTTAAAACTGTGGTGGAGGATGATTCCGATAATAAGGAAATATTGGCTGATGGGGATATAGTACGAACTATAGTGAAGTTCTTGTCTCATGAGCAATCCAAAGAGAGGGAGGAAGCTGTCTCTTTGCTGTATGAACTATCCAAATCTGAAGCCTTATGTGAGAAGATTGGTTCAATTAATGGAGCGATTCTTATTTTGGTGGGAATGACAAGCAGCAAATCAGATAACATTTTGACTGTTGAGAACGCTGATAAAACATTAGAGAATCTGGAGAAGTATGAGAACAATGTGAGACAGATGGCTGAAAATGGTAGACTGCAGCCTCTTCTGACACAAATTCGTGAAGGCCCTCCAGAAACCCAACTTTCGATGTCTAATTTCCTTGGTGAGTTAGTTTTGGACAATGATGTAAAGGTCCTAGTGGCTAAAAGTGTGGGTTCAGCTTTGATTAACATCATGAGAAGTGGTGATATGCAGTCAAGAGAAGCAGCTTTGAAAGCTCTCAACCAAATTTCATCTTGTGAGGCAAGTGCCAAGGTACTGATAGAGGCAGGAATACTTCCGTCTCTGGTCAAAGATCTCTTTTTCGTTGGGACTAACCAGCCTATGCGACTGAAGGAGGTTGCTGCAACAATTCTTGCTAATGTTGTTAGCACAGACTATGATTTTGATTCCATCTTGGTTGGACCCGATCAGCAAACGCTAGTCTCAGAAGACATTGTCCATAACCTACTACATCTCATTAGCAACACTGGACCAGCAATCGAGAGCAAGCTTCTCCAGGTTCTTGTTGGACTCACTAGCTCTCCTTCAACTATTCTGAGTGTTGTTGCCGCCATTAAAAGCTCAGGTGCCATTATTAGTTTGGTGCAGTTTATTGAGGCTCCACAAAAGGAATTACGTGTGGCTTCCATTAAACTTCTCCAGAACCTCTCTCCACATGTGGGCCAGGAGCTAGCTGACGCCCTACGTGGCACAGTGGGCCAACTTGGAAGCCTAATAAAAGTCATATCAGAGAATATTTCAATCACTGAAGAGCAAGCAGCAGCCATCAGCGTCTTAGCTGAACTACCGGAGAGGGATCTAGGCCTTGCCAGGCAGATGCTAGATGACGGTGCCTTTGAGCTGGTACATTCTAAAATAGTTAAGATCCGCCAAGGGGGGAGTAGGGGTGGCCGCTTTGTGACGCCATTTTTAGAAGGACTTGTACGAGTTCTAGCCAGGGTTACACTTGTGTTGGCTGATGAGCAAGGTGCAGTTTCTCTGTGCCGTGAACTTAATCTTGCTGCACTTTTCATTGAACTTCTACAGTCCAATGGACTGGAGAATGTACAGATGAGTTCGGCAGCAGCATTGGAGAATTTATCACAAGAATCCAAAAATTTGACAAGATTGCCCGAGTTGCCTACACCTGGTTTCTGTGCTTCAGTTTTTTCATGTTTTAGCAAGCCACCTGCCATAAACGGATTGTGTCGGCTTCATCGTGGGACGTGTTCACTTAGAGAGAGTTTTTGTCTCTTGGAGGGACATGCTGTGGAAAAGTTGGTAGCTCTTCTGGACCACACAAACGAGAAGGTGGTCGAAGCAGCACTTGCAGCACTCTCTACTCTGTTGGATGATGGGGTTGATATCGAACAAGGGGTTATGGTGTTGTGTGAGGCAGAGGGGGTGAAGCCTATTCTTGACGTGTTGTTAGAGAAACGGACAGAGAATCTGAGGAGGAGGGCAGTCTGGGTAGTTGAAAGACTATTGCGGAGTGATGAGATAGCCTATGAAGTTTCTGGAGATCCGAACGTGAGCACCGCACTTGTTGATGCCTTCCAGCATGGTGACTATCGAACCCGGCAGATTGCTGAACGTGCCCTGAAGCACGTTGACAGGTTACCAAACTTCTCTGGTGTCTTTCCGAACGCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0005102 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005886 GO:0006464 GO:0006807 GO:0007275 GO:0007568 GO:0008150 GO:0008152 GO:0009889 GO:0009890 GO:0009892 GO:0009894 GO:0009987 GO:0010115 GO:0010150 GO:0010271 GO:0010380 GO:0010565 GO:0016020 GO:0016567 GO:0016740 GO:0019216 GO:0019222 GO:0019538 GO:0019747 GO:0019787 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031329 GO:0032446 GO:0032501 GO:0032502 GO:0033612 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043455 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0045827 GO:0045833 GO:0046890 GO:0048366 GO:0048367 GO:0048519 GO:0048523 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0051055 GO:0051171 GO:0051193 GO:0062012 GO:0062014 GO:0065007 GO:0070647 GO:0070696 GO:0071704 GO:0071944 GO:0080090 GO:0090056 GO:0090359 GO:0090693 GO:0099402 GO:0140096 GO:1901401 GO:1901404 GO:1901463 GO:1901564 GO:1902930 GO:1902931

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Arm U-box

Protein Analysis

849

Amino Acids

93.3

Weight (kDa)

5.5

Isoelectric Point (pI)

42.0

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
U-box	PF04564	68 - 142	4.1e-14	U-box domain
ARM_ARMC5	PF24768	147 - 324	3e-07	ARMC5
ARM_PUB	PF25598	151 - 265	4.4e-07	Plant U-box protein ARM repeat region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008636)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G20780 AT1G20780 AT1G20780 AT1G76390 AT1G76390
fragaria_vesca	FvH4_5g25630 FvH4_5g25630
malus_domestica	MD00G1113800.v1.1 MD06G1007200.v1.1
prunus_persica	Prupe.5G009100_v2.0.a1 Prupe.5G009100_v2.0.a1
pyrus_communis	pycom06g00630 pycom16g26080
rosa_chinensis	RchiOBHm_Chr7g0215921
rosa_laevigata	RLG00000002607
rosa_multiflora	Rmu_sc0006240.1_g000004
rosa_roxburghii	Rroxscaffold_3G00243800
rosa_rugosa	Rorug07G0156800
rosa_samantha	Rh7AG294900 Rh7BG286900 Rh7CG315000 Rh7DG297700
rosa_wichuraiana	Rw7G025050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	2092
Acc36I	ACCTGC	1 cut(s)	2092
AccB1I	GGYRCC	2 cut(s)	1481, 1745
AccI	GTMKAC	1 cut(s)	943
AccII	CGCG	1 cut(s)	240
AciI	CCGC	5 cut(s)	1464, 1783, 1807, 2383, 2433
AclWI	GGATC	4 cut(s)	236, 1719, 1774, 2411
AcoI	YGGCCR	3 cut(s)	68, 262, 1804
AcsI	RAATTY	5 cut(s)	25, 966, 1140, 1990, 2011
AcuI	CTGAAG	5 cut(s)	798, 1265, 1683, 2040, 2516
AcyI	GRCGYC	2 cut(s)	1593, 1817
AfaI	GTAC	5 cut(s)	693, 1170, 1761, 1839, 1962
AfiI	CCNNNNNNNGG	4 cut(s)	735, 1574, 1789, 2042
AflIII	ACRYGT	5 cut(s)	582, 1531, 1570, 2120, 2316
AjiI	CACGTC	2 cut(s)	2121, 2317
AjnI	CCWGG	5 cut(s)	1410, 1578, 1724, 1850, 2041
Alw21I	GWGCWC	1 cut(s)	2432
Alw26I	GTCTC	6 cut(s)	720, 754, 916, 1200, 1342, 2150
AlwI	GGATC	4 cut(s)	236, 1719, 1774, 2411
Ama87I	CYCGRG	1 cut(s)	2027
AoxI	GGCC	8 cut(s)	68, 262, 492, 976, 1576, 1612, 1717, 1804
ApoI	RAATTY	5 cut(s)	25, 966, 1140, 1990, 2011
ArsI	GACNNNNNNTTYG	4 cut(s)	1280, 1312, 1733, 1765
AseI	ATTAAT	1 cut(s)	807
AspLEI	GCGC	1 cut(s)	240
AspS9I	GGNCC	7 cut(s)	977, 1045, 1316, 1385, 1576, 1612, 2188
AsuC2I	CCSGG	1 cut(s)	2473
AsuHPI	GGTGA	5 cut(s)	377, 1028, 1109, 2311, 2471
AsuNHI	GCTAGC	1 cut(s)	1585
AvaI	CYCGRG	1 cut(s)	2027
AvaII	GGWCC	4 cut(s)	1045, 1316, 1385, 2188
BaeGI	GKGCMC	1 cut(s)	2494
BalI	TGGCCA	1 cut(s)	70
BanI	GGYRCC	2 cut(s)	1481, 1745
BarI	GAAGNNNNNNTAC	2 cut(s)	1821, 1853
BbsI	GAAGAC	1 cut(s)	1350
Bbv12I	GWGCWC	1 cut(s)	2432
BccI	CCATC	8 cut(s)	69, 106, 160, 674, 922, 1313, 1688, 2243
BceAI	ACGGC	2 cut(s)	277, 1884
BciT130I	CCWGG	5 cut(s)	1412, 1580, 1726, 1852, 2043
BcnI	CCSGG	1 cut(s)	2473
BcoDI	GTCTC	6 cut(s)	720, 754, 916, 1200, 1342, 2150
BfaI	CTAG	8 cut(s)	378, 1049, 1334, 1431, 1586, 1715, 1736, 1847
BfmI	CTRYAG	3 cut(s)	699, 947, 1937
BfuAI	ACCTGC	1 cut(s)	2092
BglII	AGATCT	1 cut(s)	1207
BlpI	GCTNAGC	1 cut(s)	432
Bme1390I	CCNGG	6 cut(s)	1412, 1580, 1726, 1852, 2043, 2473
Bme18I	GGWCC	4 cut(s)	1045, 1316, 1385, 2188
BmeT110I	CYCGRG	1 cut(s)	2027
BmgBI	CACGTC	2 cut(s)	2121, 2317
BmgT120I	GGNCC	7 cut(s)	977, 1045, 1316, 1385, 1576, 1612, 2188
BmiI	GGNNCC	4 cut(s)	1318, 1483, 1515, 1747
BmrFI	CCNGG	6 cut(s)	1412, 1580, 1726, 1852, 2043, 2473
BmsI	GCATC	3 cut(s)	193, 1722, 2434
BmtI	GCTAGC	1 cut(s)	1589
BpiI	GAAGAC	1 cut(s)	1350
BpmI	CTGGAG	6 cut(s)	920, 966, 1394, 1538, 1973, 2433
Bpu10I	CCTNAGC	1 cut(s)	1477
Bpu1102I	GCTNAGC	1 cut(s)	432
BpuMI	CCSGG	1 cut(s)	2473
BsaAI	YACGTR	2 cut(s)	1532, 1601
BsaBI	GATNNNNATC	1 cut(s)	1082
BsaHI	GRCGYC	2 cut(s)	1593, 1817
BsaJI	CCNNGG	4 cut(s)	1012, 1164, 1786, 1851
BsaWI	WCCGGW	1 cut(s)	1702
BsaXI	ACNNNNNCTCC	6 cut(s)	63, 93, 1420, 1450, 1786, 1816
Bsc4I	CCNNNNNNNGG	4 cut(s)	735, 1574, 1789, 2042
Bse118I	RCCGGY	1 cut(s)	143
Bse1I	ACTGG	2 cut(s)	1387, 1956
Bse3DI	GCAATG	1 cut(s)	559
Bse8I	GATNNNNATC	1 cut(s)	1082
BseBI	CCWGG	5 cut(s)	1412, 1580, 1726, 1852, 2043
BseDI	CCNNGG	4 cut(s)	1012, 1164, 1786, 1851
BseGI	GGATG	2 cut(s)	655, 2251
BseJI	GATNNNNATC	1 cut(s)	1082
BseLI	CCNNNNNNNGG	4 cut(s)	735, 1574, 1789, 2042
BseMI	GCAATG	1 cut(s)	559
BseMII	CTCAG	8 cut(s)	55, 446, 455, 486, 1353, 1442, 1491, 2336
BseNI	ACTGG	2 cut(s)	1387, 1956
BseRI	GAGGAG	2 cut(s)	2362, 2365
BseSI	GKGCMC	1 cut(s)	2494
BsgI	GTGCAG	3 cut(s)	1520, 1902, 1905
Bsh1236I	CGCG	1 cut(s)	240
BshFI	GGCC	8 cut(s)	70, 264, 494, 978, 1578, 1614, 1719, 1806
BshNI	GGYRCC	2 cut(s)	1481, 1745
BsiHKAI	GWGCWC	1 cut(s)	2432
BsiHKCI	CYCGRG	1 cut(s)	2027
BsiSI	CCGG	3 cut(s)	144, 1703, 2473
BslFI	GGGAC	3 cut(s)	1237, 2131, 2169
BslI	CCNNNNNNNGG	4 cut(s)	735, 1574, 1789, 2042
BsmAI	GTCTC	6 cut(s)	720, 754, 916, 1200, 1342, 2150
BsmBI	CGTCTC	1 cut(s)	1200
BsmFI	GGGAC	3 cut(s)	1237, 2131, 2169
BsmI	GAATGC	2 cut(s)	311, 418
BsnI	GGCC	8 cut(s)	70, 264, 494, 978, 1578, 1614, 1719, 1806
BsoBI	CYCGRG	1 cut(s)	2027
Bsp1286I	GDGCHC	2 cut(s)	2432, 2494
Bsp1407I	TGTACA	1 cut(s)	1960
Bsp143I	GATC	8 cut(s)	241, 367, 530, 1207, 1321, 1711, 1779, 2416
Bsp1720I	GCTNAGC	1 cut(s)	432
BspACI	CCGC	5 cut(s)	1464, 1783, 1807, 2383, 2433
BspANI	GGCC	8 cut(s)	70, 264, 494, 978, 1578, 1614, 1719, 1806
BspCNI	CTCAG	8 cut(s)	54, 445, 456, 485, 1352, 1443, 1490, 2337
BspFNI	CGCG	1 cut(s)	240
BspHI	TCATGA	2 cut(s)	718, 1086
BspLI	GGNNCC	4 cut(s)	1318, 1483, 1515, 1747
BspMAI	CTGCAG	1 cut(s)	951
BspMI	ACCTGC	1 cut(s)	2092
BspOI	GCTAGC	1 cut(s)	1589
BspPI	GGATC	4 cut(s)	236, 1719, 1774, 2411
BspQI	GCTCTTC	3 cut(s)	584, 1659, 2187
BspT107I	GGYRCC	2 cut(s)	1481, 1745
BsrDI	GCAATG	1 cut(s)	559
BsrFI	RCCGGY	1 cut(s)	143
BsrGI	TGTACA	1 cut(s)	1960
BsrI	ACTGG	2 cut(s)	1387, 1956
BssAI	RCCGGY	1 cut(s)	143
BssECI	CCNNGG	4 cut(s)	1012, 1164, 1786, 1851
BssMI	GATC	8 cut(s)	241, 367, 530, 1207, 1321, 1711, 1779, 2416
BssNI	GRCGYC	2 cut(s)	1593, 1817
BssT1I	CCWWGG	3 cut(s)	1012, 1164, 1786
Bst2UI	CCWGG	5 cut(s)	1412, 1580, 1726, 1852, 2043
Bst4CI	ACNGT	5 cut(s)	640, 868, 1609, 1745, 1941
Bst6I	CTCTTC	5 cut(s)	399, 584, 960, 1659, 2187
BstACI	GRCGYC	2 cut(s)	1593, 1817
BstAPI	GCANNNNNTGC	3 cut(s)	235, 554, 2222
BstAUI	TGTACA	1 cut(s)	1960
BstBAI	YACGTR	2 cut(s)	1532, 1601
BstC8I	GCNNGC	5 cut(s)	550, 1403, 1587, 1671, 2078
BstEII	GGTNACC	1 cut(s)	2511
BstF5I	GGATG	2 cut(s)	655, 2251
BstFNI	CGCG	1 cut(s)	240
BstHHI	GCGC	1 cut(s)	240
BstKTI	GATC	8 cut(s)	244, 370, 533, 1210, 1324, 1714, 1782, 2419
BstMAI	GTCTC	6 cut(s)	720, 754, 916, 1200, 1342, 2150
BstMBI	GATC	8 cut(s)	241, 367, 530, 1207, 1321, 1711, 1779, 2416
BstNI	CCWGG	5 cut(s)	1412, 1580, 1726, 1852, 2043
BstNSI	RCATGY	4 cut(s)	545, 586, 1574, 2162
BstPI	GGTNACC	1 cut(s)	2511
BstSCI	CCNGG	6 cut(s)	1410, 1578, 1724, 1850, 2041, 2471
BstSFI	CTRYAG	3 cut(s)	699, 947, 1937
BstSLI	GKGCMC	1 cut(s)	2494
BstUI	CGCG	1 cut(s)	240
BstV2I	GAAGAC	1 cut(s)	1350
BstX2I	RGATCY	4 cut(s)	1207, 1711, 1779, 2416
BstXI	CCANNNNNNTGG	1 cut(s)	1951
BstYI	RGATCY	4 cut(s)	1207, 1711, 1779, 2416
BsuRI	GGCC	8 cut(s)	70, 264, 494, 978, 1578, 1614, 1719, 1806
BtrI	CACGTC	2 cut(s)	2121, 2317
BtsCI	GGATG	2 cut(s)	655, 2251
BtsIMutI	CAGTG	4 cut(s)	338, 1380, 1614, 1659
BveI	ACCTGC	1 cut(s)	2092
Cac8I	GCNNGC	5 cut(s)	550, 1403, 1587, 1671, 2078
CciI	TCATGA	2 cut(s)	718, 1086
CfoI	GCGC	1 cut(s)	240
Cfr10I	RCCGGY	1 cut(s)	143
Cfr13I	GGNCC	7 cut(s)	977, 1045, 1316, 1385, 1576, 1612, 2188
CseI	GACGC	3 cut(s)	1601, 1675, 1825
CsiI	ACCWGGT	1 cut(s)	2041
Csp6I	GTAC	5 cut(s)	692, 1169, 1760, 1838, 1961
CspCI	CAANNNNNGTGG	2 cut(s)	298, 333
CviQI	GTAC	5 cut(s)	692, 1169, 1760, 1838, 1961
DpnI	GATC	8 cut(s)	243, 369, 532, 1209, 1323, 1713, 1781, 2418
DpnII	GATC	8 cut(s)	241, 367, 530, 1207, 1321, 1711, 1779, 2416
EaeI	YGGCCR	3 cut(s)	68, 262, 1804
Eam1104I	CTCTTC	5 cut(s)	399, 584, 960, 1659, 2187
EarI	CTCTTC	5 cut(s)	399, 584, 960, 1659, 2187
EciI	GGCGGA	1 cut(s)	1772
Eco130I	CCWWGG	3 cut(s)	1012, 1164, 1786
Eco147I	AGGCCT	1 cut(s)	1719
Eco32I	GATATC	1 cut(s)	2260
Eco47I	GGWCC	4 cut(s)	1045, 1316, 1385, 2188
Eco57I	CTGAAG	5 cut(s)	798, 1265, 1683, 2040, 2516
Eco88I	CYCGRG	1 cut(s)	2027
Eco91I	GGTNACC	1 cut(s)	2511
EcoO109I	RGGNCCY	2 cut(s)	977, 1045
EcoO65I	GGTNACC	1 cut(s)	2511
EcoRII	CCWGG	5 cut(s)	1410, 1578, 1724, 1850, 2041
EcoRV	GATATC	1 cut(s)	2260
EcoT14I	CCWWGG	3 cut(s)	1012, 1164, 1786
EcoT22I	ATGCAT	1 cut(s)	208
ErhI	CCWWGG	3 cut(s)	1012, 1164, 1786
Esp3I	CGTCTC	1 cut(s)	1200
FalI	AAGNNNNNCTT	2 cut(s)	2205, 2237
FaqI	GGGAC	3 cut(s)	1237, 2131, 2169
FblI	GTMKAC	1 cut(s)	943
FokI	GGATG	2 cut(s)	662, 2258
FspBI	CTAG	8 cut(s)	378, 1049, 1334, 1431, 1586, 1715, 1736, 1847
GlaI	GCGC	1 cut(s)	239
GsuI	CTGGAG	6 cut(s)	920, 966, 1394, 1538, 1973, 2433
HaeIII	GGCC	8 cut(s)	70, 264, 494, 978, 1578, 1614, 1719, 1806
HapII	CCGG	3 cut(s)	144, 1703, 2473
HgaI	GACGC	3 cut(s)	1601, 1675, 1825
HhaI	GCGC	1 cut(s)	240
Hin1I	GRCGYC	2 cut(s)	1593, 1817
Hin6I	GCGC	1 cut(s)	238
HinP1I	GCGC	1 cut(s)	238
HincII	GTYRAC	2 cut(s)	580, 2506
HindII	GTYRAC	2 cut(s)	580, 2506
HindIII	AAGCTT	2 cut(s)	618, 1403
HinfI	GANTC	8 cut(s)	460, 653, 817, 895, 1301, 1425, 2003, 2341
HpaII	CCGG	3 cut(s)	144, 1703, 2473
HphI	GGTGA	5 cut(s)	377, 1028, 1109, 2311, 2471
Hpy166II	GTNNAC	5 cut(s)	580, 944, 1904, 2126, 2506
Hpy8I	GTNNAC	5 cut(s)	580, 944, 1904, 2126, 2506
HpyAV	CCTTC	7 cut(s)	315, 968, 1240, 1449, 1823, 2197, 2458
HpyCH4III	ACNGT	5 cut(s)	640, 868, 1609, 1745, 1941
HpyCH4IV	ACGT	7 cut(s)	1531, 1600, 2120, 2316, 2424, 2488, 2502
HpySE526I	ACGT	7 cut(s)	1531, 1600, 2120, 2316, 2424, 2488, 2502
Hsp92I	GRCGYC	2 cut(s)	1593, 1817
HspAI	GCGC	1 cut(s)	238
Kzo9I	GATC	8 cut(s)	241, 367, 530, 1207, 1321, 1711, 1779, 2416
LguI	GCTCTTC	3 cut(s)	584, 1659, 2187
LmnI	GCTCC	4 cut(s)	84, 812, 1519, 1582
LweI	GCATC	3 cut(s)	193, 1722, 2434
MabI	ACCWGGT	1 cut(s)	2041
MaeI	CTAG	8 cut(s)	378, 1049, 1334, 1431, 1586, 1715, 1736, 1847
MaeII	ACGT	7 cut(s)	1531, 1600, 2120, 2316, 2424, 2488, 2502
MaeIII	GTNAC	5 cut(s)	247, 1813, 1855, 2459, 2511
MalI	GATC	8 cut(s)	243, 369, 532, 1209, 1323, 1713, 1781, 2418
MboI	GATC	8 cut(s)	241, 367, 530, 1207, 1321, 1711, 1779, 2416
MboII	GAAGA	7 cut(s)	416, 601, 805, 947, 1355, 1676, 2174
MfeI	CAATTG	1 cut(s)	285
MflI	RGATCY	4 cut(s)	1207, 1711, 1779, 2416
MhlI	GDGCHC	2 cut(s)	2432, 2494
MlsI	TGGCCA	1 cut(s)	70
MluNI	TGGCCA	1 cut(s)	70
MlyI	GAGTC	1 cut(s)	1419
MmeI	TCCRAC	3 cut(s)	1294, 1402, 2223
Mox20I	TGGCCA	1 cut(s)	70
Mph1103I	ATGCAT	1 cut(s)	208
MscI	TGGCCA	1 cut(s)	70
MseI	TTAA	8 cut(s)	221, 633, 807, 1080, 1470, 1545, 1776, 1908
Msp20I	TGGCCA	1 cut(s)	70
MspI	CCGG	3 cut(s)	144, 1703, 2473
MspR9I	CCNGG	6 cut(s)	1412, 1580, 1726, 1852, 2043, 2473
MunI	CAATTG	1 cut(s)	285
Mva1269I	GAATGC	2 cut(s)	311, 418
MvaI	CCWGG	5 cut(s)	1412, 1580, 1726, 1852, 2043
MvnI	CGCG	1 cut(s)	240
NciI	CCSGG	1 cut(s)	2473
NdeII	GATC	8 cut(s)	241, 367, 530, 1207, 1321, 1711, 1779, 2416
NheI	GCTAGC	1 cut(s)	1585
NlaIV	GGNNCC	4 cut(s)	1318, 1483, 1515, 1747
NmuCI	GTSAC	2 cut(s)	1813, 2459
NsiI	ATGCAT	1 cut(s)	208
NspI	RCATGY	4 cut(s)	545, 586, 1574, 2162
PagI	TCATGA	2 cut(s)	718, 1086
PaqCI	CACCTGC	1 cut(s)	2092
PceI	AGGCCT	1 cut(s)	1719
PciI	ACATGT	2 cut(s)	582, 1570
PciSI	GCTCTTC	3 cut(s)	584, 1659, 2187
PcsI	WCGNNNNNNNCGW	1 cut(s)	2110
PctI	GAATGC	2 cut(s)	311, 418
PfeI	GAWTC	7 cut(s)	460, 653, 817, 895, 1301, 2003, 2341
PflFI	GACNNNGTC	1 cut(s)	1349
PleI	GAGTC	1 cut(s)	1419
PpsI	GAGTC	1 cut(s)	1419
Ppu21I	YACGTR	2 cut(s)	1532, 1601
PpuMI	RGGWCCY	1 cut(s)	1045
PscI	ACATGT	2 cut(s)	582, 1570
PshBI	ATTAAT	1 cut(s)	807
Psp5II	RGGWCCY	1 cut(s)	1045
Psp6I	CCWGG	5 cut(s)	1410, 1578, 1724, 1850, 2041
PspEI	GGTNACC	1 cut(s)	2511
PspGI	CCWGG	5 cut(s)	1410, 1578, 1724, 1850, 2041
PspN4I	GGNNCC	4 cut(s)	1318, 1483, 1515, 1747
PspPI	GGNCC	7 cut(s)	977, 1045, 1316, 1385, 1576, 1612, 2188
PspPPI	RGGWCCY	1 cut(s)	1045
PstI	CTGCAG	1 cut(s)	951
PsuI	RGATCY	4 cut(s)	1207, 1711, 1779, 2416
PsyI	GACNNNGTC	1 cut(s)	1349
RsaI	GTAC	5 cut(s)	693, 1170, 1761, 1839, 1962
RsaNI	GTAC	5 cut(s)	692, 1169, 1760, 1838, 1961
SapI	GCTCTTC	3 cut(s)	584, 1659, 2187
SaqAI	TTAA	8 cut(s)	221, 633, 807, 1080, 1470, 1545, 1776, 1908
Sau3AI	GATC	8 cut(s)	241, 367, 530, 1207, 1321, 1711, 1779, 2416
Sau96I	GGNCC	7 cut(s)	977, 1045, 1316, 1385, 1576, 1612, 2188
SchI	GAGTC	1 cut(s)	1419
ScrFI	CCNGG	6 cut(s)	1412, 1580, 1726, 1852, 2043, 2473
SduI	GDGCHC	2 cut(s)	2432, 2494
SexAI	ACCWGGT	1 cut(s)	2041
SfaNI	GCATC	3 cut(s)	193, 1722, 2434
SfcI	CTRYAG	3 cut(s)	699, 947, 1937
SinI	GGWCC	4 cut(s)	1045, 1316, 1385, 2188
SseBI	AGGCCT	1 cut(s)	1719
SsiI	CCGC	5 cut(s)	1464, 1783, 1807, 2383, 2433
SspI	AATATT	2 cut(s)	672, 1651
SspMI	CTAG	8 cut(s)	378, 1049, 1334, 1431, 1586, 1715, 1736, 1847
StuI	AGGCCT	1 cut(s)	1719
StyD4I	CCNGG	6 cut(s)	1410, 1578, 1724, 1850, 2041, 2471
StyI	CCWWGG	3 cut(s)	1012, 1164, 1786
TaaI	ACNGT	5 cut(s)	640, 868, 1609, 1745, 1941
TaiI	ACGT	7 cut(s)	1534, 1603, 2123, 2319, 2427, 2491, 2505
TaqI	TCGA	6 cut(s)	189, 998, 1395, 2211, 2262, 2467
TatI	WGTACW	1 cut(s)	1960
TauI	GCSGC	2 cut(s)	1466, 1809
TfiI	GAWTC	7 cut(s)	460, 653, 817, 895, 1301, 2003, 2341
Tru1I	TTAA	8 cut(s)	221, 633, 807, 1080, 1470, 1545, 1776, 1908
Tru9I	TTAA	8 cut(s)	221, 633, 807, 1080, 1470, 1545, 1776, 1908
TscAI	CASTG	4 cut(s)	345, 1387, 1614, 1666
TseFI	GTSAC	2 cut(s)	1813, 2459
Tsp45I	GTSAC	2 cut(s)	1813, 2459
TspDTI	ATGAA	7 cut(s)	438, 777, 1134, 1915, 2055, 2099, 2418
TspGWI	ACGGA	3 cut(s)	1182, 2109, 2347
TspRI	CASTG	4 cut(s)	345, 1387, 1614, 1666
Tth111I	GACNNNGTC	1 cut(s)	1349
VpaK11BI	GGWCC	4 cut(s)	1045, 1316, 1385, 2188
VspI	ATTAAT	1 cut(s)	807
XapI	RAATTY	5 cut(s)	25, 966, 1140, 1990, 2011
XceI	RCATGY	4 cut(s)	545, 586, 1574, 2162
XcmI	CCANNNNNNNNNTGG	2 cut(s)	1418, 1492
XmiI	GTMKAC	1 cut(s)	943
XspI	CTAG	8 cut(s)	378, 1049, 1334, 1431, 1586, 1715, 1736, 1847
Zsp2I	ATGCAT	1 cut(s)	208

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.