Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0008636

Physical Location & Seq

Genomic Coordinates Reverse (-)

36244686 .. 36247718

Gene Structure 3033 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00243800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2355 bp

ATGGCTGAAAGCTGGCAGGGGAGTTATGACGCCGGCAGCCAGTCAGATGACAGCTATAGATTTGAGAGGCTGCACATTGAGCCTATTTATGATTCATTCTTTTGCCCCTTAACGAAGCAAGTTATGCGGGACCCCGTTACCTTAGAAAATGGGCAAACATTTGAACGCGAAGCAATTGAAAAGTGGTTCAGGGAGTGCAGGGAGAGTGGAAGGAATTTACAGTGCCCACTCACACTAAAAGAATTAAAAAGCGCTGAATTGAAGCCGAGCATAGCTTTGCGAAACACCATTGAAGAGTGGAGTGCTAGGAATGAAGCTGCTCAGCTTGATATGGCTCGTAAATCATTGAATTCGAGCAGTTCAGAAGATGATATTCTTTTGGCCTTGGAGTATGTCCAGCAAATCTGCAAGAAAAGCAGATCAAATAAGCACATTGCACGAAATACAGGATTGTTGCCCATGATCATTGACATGTTGAAGAGCAGCAGTCGTAGAGTTCGGTGTAAATCTTTGGACACCCTAAGAATTGTTGTAGAGGACGATTCTGAAAATAAGGAAATATTGGCAGAGGGGGACACTGTACGCTCAATAGTAAAGTTGTTGTCTCATGAGCAATCTAAAGAGAGAGAGGAAGCTGTCTCTTTGCTATATGAACTATCCAAATCCGAAGCCTTATGTGAGAAGATTGGTTCAATTCCCGGAGCAATTCTTATGTTGGTTGGAATGACAAGCAGCAAATCAGATAACATTTTGACTGTTGAGAAAGCTGAGAAAACATTAGAGAATCTGGAGAAGTGTGAGAACAATGTGCTTCAGATGGCTGAAAATGGTAGACTGCAGGCTCTTCTGACACAAATTCTTGAAGGCCCCCCAGAAACTAAACTATCAATGGCTAGTTTCCTTGGCAACCTGGTTTTGGACAATGATGTAAAGGTCCAAGTGGCTAAAAGTCTGGGTTCATCTTTGATCAATATCATGAGAAGTGGTAATATGCAGTCAAGAGAAGCTGCTTTGAAAGCTCTAAACCAAATTTCATCTTGTGAGGCAAGTGCCAAGGTGCTGATAGAGGCAGGAATACTTCCATCTCTGGTCAAAGACCTCTTTACTGTTGGCCCTCATCAGCCTCCTATGCGACTCAAAGAGGTTGCCGCAACAATTCTTGCTAATATTGTTTACTCAGACTATGACTTTGATTCCATATTAGTTGGACCTGATCACCAGACTCTAGTCTCAGAAGACATAGTCCATAACCTACTACATTTAATTAGCAACACAGGCCCAGCAATCGAGTGCAAGCTTCTCCAGGTTCTTGTTGGACTCACTGGCTCTCCCTCTACTGTTTTGAGTGTTGTTGCCGCCATTAAAAGCTCTGGCGCCATTATTAGTTTGGTGCAGTTTATTGAAGCTCCACAAAAGGAGTTGCGTGTGGCTTGCATTAAACTTCTCCAAAACCTCTCCCCACACGTGGGTCAGGAACTAGCTGACGCTCTACGTGGCACAGTGGGCCAACTTGGCAGCCTAATCAAAGTAATATCAGAAAATATTTCAGTCACTGATGAGCAAGCAGCAGCCATTGGCCTCTTAGCTGAACTTCCGGAGAGGGATCTGGGCCTCGCCCGACAAATGCTAGATGAAGGGCTTGTACGGGTTCTAGCAAGGGTTACTCTTGTGTTGGCTGATGAGCAAGATGCAATTACACTCTGCCGTGAGCTTAATGTTGCAGCCCTTTTCATTGAGCTTCTTCAATCCAATGGACTGGACAATGTACAGATGAGTTCTGCCTCAGCATTGGAGAACTTATCACAAGAATCCAAAAATTTGACAAAATTTCCCGAGTTGCCTACCCCTGGTGTTTGTGCCTCAATTTTCCCATGCTTTAGCAAGCAACCTACCATAAATGGACTGTGTCGGCTTCACCGTGGCACATGCTCACTTAGAGAAAGTTTTTGTCTCTTGGAAGGACAGGCTGTGGACAAATTGGTAGCTCTTCTTGACCACACAAATGAGAAGGTGGTTGAAGCAGCCCTTGCAGCATTGTCTACTTTGTTGGATGATGGGCTTGATATCGAACAAGGGGTTTTGGTATTGTGTGAAGCAGAGGGAGTCAGACCCATTCTAGATGTGTTACTAGAGAAACGGACAGAGAATCTGAGGAGGAGGGCAGTTTGGGTAGTTGAGAGACTATTGCGGAGTGATGAGATAGCCTATGAAGTGTCTGGAGATCCAAATGTGAGTACCGCACTTGTTGATGCATTCCAGCATGGTGACTATCGAACCCGACAGATTGCCGAACGTGCTTTGAAGCATGTTGACAGGTTACCAAACTTCTCTGGAGTGTTTCCAAGTGCAGGATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0005102 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005886 GO:0006464 GO:0006807 GO:0007275 GO:0007568 GO:0008150 GO:0008152 GO:0009889 GO:0009890 GO:0009892 GO:0009894 GO:0009987 GO:0010115 GO:0010150 GO:0010271 GO:0010380 GO:0010565 GO:0016020 GO:0016567 GO:0016740 GO:0019216 GO:0019222 GO:0019538 GO:0019747 GO:0019787 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031329 GO:0032446 GO:0032501 GO:0032502 GO:0033612 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043455 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0045827 GO:0045833 GO:0046890 GO:0048366 GO:0048367 GO:0048519 GO:0048523 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0051055 GO:0051171 GO:0051193 GO:0062012 GO:0062014 GO:0065007 GO:0070647 GO:0070696 GO:0071704 GO:0071944 GO:0080090 GO:0090056 GO:0090359 GO:0090693 GO:0099402 GO:0140096 GO:1901401 GO:1901404 GO:1901463 GO:1901564 GO:1902930 GO:1902931

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Arm U-box

Protein Analysis

784

Amino Acids

86.07

Weight (kDa)

5.11

Isoelectric Point (pI)

46.77

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
U-box	PF04564	31 - 105	1e-14	U-box domain
ARM_ARMC5	PF24768	110 - 285	1.1e-06	ARMC5
ARM_PUB	PF25598	114 - 221	2.6e-06	Plant U-box protein ARM repeat region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008636)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G20780 AT1G20780 AT1G20780 AT1G76390 AT1G76390
fragaria_vesca	FvH4_5g25630 FvH4_5g25630
malus_domestica	MD00G1113800.v1.1 MD06G1007200.v1.1
prunus_persica	Prupe.5G009100_v2.0.a1 Prupe.5G009100_v2.0.a1
pyrus_communis	pycom06g00630 pycom16g26080
rosa_chinensis	RchiOBHm_Chr7g0215921
rosa_laevigata	RLG00000002607
rosa_multiflora	Rmu_sc0006240.1_g000004
rosa_roxburghii	Rroxscaffold_3G00243800
rosa_rugosa	Rorug07G0156800
rosa_samantha	Rh7AG294900 Rh7BG286900 Rh7CG315000 Rh7DG297700
rosa_wichuraiana	Rw7G025050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	1373
AccI	GTMKAC	2 cut(s)	832, 2039
AccII	CGCG	1 cut(s)	168
AccIII	TCCGGA	1 cut(s)	1594
AciI	CCGC	5 cut(s)	127, 1149, 1356, 2188, 2238
AclWI	GGATC	2 cut(s)	1611, 2216
AcsI	RAATTY	6 cut(s)	214, 349, 855, 1029, 1816, 1826
AcuI	CTGAAG	1 cut(s)	797
AcvI	CACGTG	1 cut(s)	1465
AcyI	GRCGYC	2 cut(s)	30, 1374
AfaI	GTAC	4 cut(s)	582, 1644, 1767, 2236
AfeI	AGCGCT	1 cut(s)	253
AfiI	CCNNNNNNNGG	5 cut(s)	916, 1465, 1466, 1847, 2348
AflIII	ACRYGT	2 cut(s)	471, 1462
AjnI	CCWGG	3 cut(s)	909, 1302, 1846
Alw26I	GTCTC	5 cut(s)	609, 643, 1234, 1955, 2173
AlwI	GGATC	2 cut(s)	1611, 2216
AlwNI	CAGNNNCTG	1 cut(s)	1553
Ama87I	CYCGRG	1 cut(s)	1832
Aor13HI	TCCGGA	1 cut(s)	1594
Aor51HI	AGCGCT	1 cut(s)	253
AoxI	GGCC	7 cut(s)	381, 865, 1111, 1276, 1504, 1576, 1609
ApoI	RAATTY	6 cut(s)	214, 349, 855, 1029, 1816, 1826
ArsI	GACNNNNNNTTYG	2 cut(s)	1172, 1204
AspLEI	GCGC	2 cut(s)	254, 1376
AspS9I	GGNCC	8 cut(s)	130, 866, 934, 1112, 1208, 1277, 1504, 1609
AsuC2I	CCSGG	1 cut(s)	699
AsuHPI	GGTGA	3 cut(s)	1208, 1907, 2276
AvaI	CYCGRG	1 cut(s)	1832
AvaII	GGWCC	3 cut(s)	130, 934, 1208
BaeGI	GKGCMC	1 cut(s)	227
BanI	GGYRCC	1 cut(s)	1373
BarI	GAAGNNNNNNTAC	2 cut(s)	1626, 1658
BbrPI	CACGTG	1 cut(s)	1465
BbsI	GAAGAC	1 cut(s)	1242
BbvCI	CCTCAGC	1 cut(s)	1783
BccI	CCATC	3 cut(s)	811, 1090, 2048
BceAI	ACGGC	1 cut(s)	1689
BciT130I	CCWGG	3 cut(s)	911, 1304, 1848
BclI	TGATCA	3 cut(s)	462, 966, 1213
BcnI	CCSGG	1 cut(s)	699
BcoDI	GTCTC	5 cut(s)	609, 643, 1234, 1955, 2173
BfaI	CTAG	8 cut(s)	306, 894, 1226, 1478, 1628, 1652, 2117, 2129
BfmI	CTRYAG	2 cut(s)	55, 836
BfoI	RGCGCY	2 cut(s)	255, 1377
BglI	GCCNNNNNGGC	1 cut(s)	1512
BlpI	GCTNAGC	1 cut(s)	321
Bme1390I	CCNGG	4 cut(s)	699, 911, 1304, 1848
Bme18I	GGWCC	3 cut(s)	130, 934, 1208
BmeT110I	CYCGRG	1 cut(s)	1832
BmgT120I	GGNCC	8 cut(s)	130, 866, 934, 1112, 1208, 1277, 1504, 1609
BmiI	GGNNCC	4 cut(s)	131, 132, 868, 1375
BmrFI	CCNGG	4 cut(s)	699, 911, 1304, 1848
BmsI	GCATC	2 cut(s)	1678, 2239
BoxI	GACNNNNGTC	1 cut(s)	1226
BpiI	GAAGAC	1 cut(s)	1242
BpmI	CTGGAG	4 cut(s)	809, 1286, 2238, 2352
Bpu10I	CCTNAGC	1 cut(s)	1783
Bpu1102I	GCTNAGC	1 cut(s)	321
BpuMI	CCSGG	1 cut(s)	699
BsaAI	YACGTR	2 cut(s)	1465, 1493
BsaBI	GATNNNNATC	1 cut(s)	971
BsaHI	GRCGYC	2 cut(s)	30, 1374
BsaJI	CCNNGG	5 cut(s)	384, 901, 1053, 1846, 1918
BsaWI	WCCGGW	1 cut(s)	1594
BsaXI	ACNNNNNCTCC	2 cut(s)	1312, 1342
Bsc4I	CCNNNNNNNGG	5 cut(s)	916, 1465, 1466, 1847, 2348
Bse118I	RCCGGY	1 cut(s)	32
Bse1I	ACTGG	3 cut(s)	40, 1327, 1761
Bse3DI	GCAATG	1 cut(s)	432
Bse8I	GATNNNNATC	1 cut(s)	971
BseAI	TCCGGA	1 cut(s)	1594
BseBI	CCWGG	3 cut(s)	911, 1304, 1848
BseDI	CCNNGG	5 cut(s)	384, 901, 1053, 1846, 1918
BseGI	GGATG	1 cut(s)	2056
BseJI	GATNNNNATC	1 cut(s)	971
BseLI	CCNNNNNNNGG	5 cut(s)	916, 1465, 1466, 1847, 2348
BseMI	GCAATG	1 cut(s)	432
BseMII	CTCAG	6 cut(s)	335, 759, 1191, 1245, 1797, 2141
BseNI	ACTGG	3 cut(s)	40, 1327, 1761
BseRI	GAGGAG	2 cut(s)	2167, 2170
BseSI	GKGCMC	1 cut(s)	227
BseYI	CCCAGC	1 cut(s)	1279
BsgI	GTGCAG	3 cut(s)	56, 217, 1412
Bsh1236I	CGCG	1 cut(s)	168
BshFI	GGCC	7 cut(s)	383, 867, 1113, 1278, 1506, 1578, 1611
BshNI	GGYRCC	1 cut(s)	1373
BsiHKCI	CYCGRG	1 cut(s)	1832
BsiSI	CCGG	3 cut(s)	33, 699, 1595
BslFI	GGGAC	2 cut(s)	143, 587
BslI	CCNNNNNNNGG	5 cut(s)	916, 1465, 1466, 1847, 2348
BsmAI	GTCTC	5 cut(s)	609, 643, 1234, 1955, 2173
BsmFI	GGGAC	2 cut(s)	143, 587
BsmI	GAATGC	1 cut(s)	2252
BsnI	GGCC	7 cut(s)	383, 867, 1113, 1278, 1506, 1578, 1611
BsoBI	CYCGRG	1 cut(s)	1832
Bsp1286I	GDGCHC	1 cut(s)	227
Bsp13I	TCCGGA	1 cut(s)	1594
Bsp1407I	TGTACA	1 cut(s)	1765
Bsp143I	GATC	6 cut(s)	419, 462, 966, 1213, 1603, 2221
Bsp1720I	GCTNAGC	1 cut(s)	321
BspACI	CCGC	5 cut(s)	127, 1149, 1356, 2188, 2238
BspANI	GGCC	7 cut(s)	383, 867, 1113, 1278, 1506, 1578, 1611
BspCNI	CTCAG	6 cut(s)	334, 760, 1190, 1244, 1796, 2142
BspEI	TCCGGA	1 cut(s)	1594
BspFNI	CGCG	1 cut(s)	168
BspHI	TCATGA	2 cut(s)	607, 975
BspLI	GGNNCC	4 cut(s)	131, 132, 868, 1375
BspMAI	CTGCAG	1 cut(s)	840
BspPI	GGATC	2 cut(s)	1611, 2216
BspQI	GCTCTTC	3 cut(s)	473, 849, 1992
BspT107I	GGYRCC	1 cut(s)	1373
BsrDI	GCAATG	1 cut(s)	432
BsrFI	RCCGGY	1 cut(s)	32
BsrGI	TGTACA	1 cut(s)	1765
BsrI	ACTGG	3 cut(s)	40, 1327, 1761
BssAI	RCCGGY	1 cut(s)	32
BssECI	CCNNGG	5 cut(s)	384, 901, 1053, 1846, 1918
BssMI	GATC	6 cut(s)	419, 462, 966, 1213, 1603, 2221
BssNI	GRCGYC	2 cut(s)	30, 1374
BssT1I	CCWWGG	3 cut(s)	384, 901, 1053
Bst2UI	CCWGG	3 cut(s)	911, 1304, 1848
Bst4CI	ACNGT	8 cut(s)	222, 580, 757, 1108, 1339, 1501, 1905, 1919
Bst6I	CTCTTC	4 cut(s)	288, 473, 849, 1992
BstACI	GRCGYC	2 cut(s)	30, 1374
BstAPI	GCANNNNNTGC	2 cut(s)	124, 2027
BstAUI	TGTACA	1 cut(s)	1765
BstBAI	YACGTR	2 cut(s)	1465, 1493
BstC8I	GCNNGC	7 cut(s)	14, 34, 840, 1295, 1432, 1563, 1883
BstDSI	CCRYGG	1 cut(s)	1918
BstEII	GGTNACC	1 cut(s)	2316
BstF5I	GGATG	1 cut(s)	2056
BstFNI	CGCG	1 cut(s)	168
BstH2I	RGCGCY	2 cut(s)	255, 1377
BstHHI	GCGC	2 cut(s)	254, 1376
BstKTI	GATC	6 cut(s)	422, 465, 969, 1216, 1606, 2224
BstMAI	GTCTC	5 cut(s)	609, 643, 1234, 1955, 2173
BstMBI	GATC	6 cut(s)	419, 462, 966, 1213, 1603, 2221
BstNI	CCWGG	3 cut(s)	911, 1304, 1848
BstNSI	RCATGY	3 cut(s)	475, 1929, 2309
BstPAI	GACNNNNGTC	1 cut(s)	1226
BstPI	GGTNACC	1 cut(s)	2316
BstSCI	CCNGG	4 cut(s)	697, 909, 1302, 1846
BstSFI	CTRYAG	2 cut(s)	55, 836
BstSLI	GKGCMC	1 cut(s)	227
BstUI	CGCG	1 cut(s)	168
BstV2I	GAAGAC	1 cut(s)	1242
BstX2I	RGATCY	2 cut(s)	1603, 2221
BstXI	CCANNNNNNTGG	1 cut(s)	1756
BstYI	RGATCY	2 cut(s)	1603, 2221
BsuRI	GGCC	7 cut(s)	383, 867, 1113, 1278, 1506, 1578, 1611
BtgI	CCRYGG	1 cut(s)	1918
BtsCI	GGATG	1 cut(s)	2056
BtsIMutI	CAGTG	5 cut(s)	227, 576, 1320, 1506, 1551
Cac8I	GCNNGC	7 cut(s)	14, 34, 840, 1295, 1432, 1563, 1883
CaiI	CAGNNNCTG	1 cut(s)	1553
CciI	TCATGA	2 cut(s)	607, 975
CfoI	GCGC	2 cut(s)	254, 1376
Cfr10I	RCCGGY	1 cut(s)	32
Cfr13I	GGNCC	8 cut(s)	130, 866, 934, 1112, 1208, 1277, 1504, 1609
CseI	GACGC	2 cut(s)	38, 1493
CsiI	ACCWGGT	1 cut(s)	909
Csp6I	GTAC	4 cut(s)	581, 1643, 1766, 2235
CviAII	CATG	8 cut(s)	460, 472, 608, 976, 1872, 1926, 2261, 2306
CviQI	GTAC	4 cut(s)	581, 1643, 1766, 2235
DinI	GGCGCC	1 cut(s)	1375
DpnI	GATC	6 cut(s)	421, 464, 968, 1215, 1605, 2223
DpnII	GATC	6 cut(s)	419, 462, 966, 1213, 1603, 2221
Eam1104I	CTCTTC	4 cut(s)	288, 473, 849, 1992
EarI	CTCTTC	4 cut(s)	288, 473, 849, 1992
Eco130I	CCWWGG	3 cut(s)	384, 901, 1053
Eco32I	GATATC	1 cut(s)	2065
Eco47I	GGWCC	3 cut(s)	130, 934, 1208
Eco47III	AGCGCT	1 cut(s)	253
Eco57I	CTGAAG	1 cut(s)	797
Eco72I	CACGTG	1 cut(s)	1465
Eco88I	CYCGRG	1 cut(s)	1832
Eco91I	GGTNACC	1 cut(s)	2316
EcoO109I	RGGNCCY	2 cut(s)	130, 866
EcoO65I	GGTNACC	1 cut(s)	2316
EcoRI	GAATTC	1 cut(s)	349
EcoRII	CCWGG	3 cut(s)	909, 1302, 1846
EcoRV	GATATC	1 cut(s)	2065
EcoT14I	CCWWGG	3 cut(s)	384, 901, 1053
EcoT22I	ATGCAT	1 cut(s)	2254
EgeI	GGCGCC	1 cut(s)	1375
EheI	GGCGCC	1 cut(s)	1375
ErhI	CCWWGG	3 cut(s)	384, 901, 1053
FaeI	CATG	8 cut(s)	463, 475, 611, 979, 1875, 1929, 2264, 2309
FalI	AAGNNNNNCTT	2 cut(s)	2010, 2042
FaqI	GGGAC	2 cut(s)	143, 587
FatI	CATG	8 cut(s)	459, 471, 607, 975, 1871, 1925, 2260, 2305
FauI	CCCGC	1 cut(s)	120
FbaI	TGATCA	3 cut(s)	462, 966, 1213
FblI	GTMKAC	2 cut(s)	832, 2039
FokI	GGATG	1 cut(s)	2063
FspBI	CTAG	8 cut(s)	306, 894, 1226, 1478, 1628, 1652, 2117, 2129
GlaI	GCGC	2 cut(s)	253, 1375
GsaI	CCCAGC	1 cut(s)	1283
GsuI	CTGGAG	4 cut(s)	809, 1286, 2238, 2352
HaeII	RGCGCY	2 cut(s)	255, 1377
HaeIII	GGCC	7 cut(s)	383, 867, 1113, 1278, 1506, 1578, 1611
HapII	CCGG	3 cut(s)	33, 699, 1595
HgaI	GACGC	2 cut(s)	38, 1493
HhaI	GCGC	2 cut(s)	254, 1376
Hin1I	GRCGYC	2 cut(s)	30, 1374
Hin1II	CATG	8 cut(s)	463, 475, 611, 979, 1875, 1929, 2264, 2309
Hin6I	GCGC	2 cut(s)	252, 1374
HinP1I	GCGC	2 cut(s)	252, 1374
HincII	GTYRAC	1 cut(s)	2311
HindII	GTYRAC	1 cut(s)	2311
HindIII	AAGCTT	1 cut(s)	1295
HpaII	CCGG	3 cut(s)	33, 699, 1595
HphI	GGTGA	3 cut(s)	1208, 1907, 2276
Hpy166II	GTNNAC	5 cut(s)	833, 1174, 1972, 2040, 2311
Hpy8I	GTNNAC	5 cut(s)	833, 1174, 1972, 2040, 2311
HpyAV	CCTTC	5 cut(s)	204, 857, 1628, 1952, 2002
HpyCH4III	ACNGT	8 cut(s)	222, 580, 757, 1108, 1339, 1501, 1905, 1919
HpyCH4IV	ACGT	3 cut(s)	1464, 1492, 2293
HpySE526I	ACGT	3 cut(s)	1464, 1492, 2293
Hsp92I	GRCGYC	2 cut(s)	30, 1374
Hsp92II	CATG	8 cut(s)	463, 475, 611, 979, 1875, 1929, 2264, 2309
HspAI	GCGC	2 cut(s)	252, 1374
KasI	GGCGCC	1 cut(s)	1373
KflI	GGGWCCC	1 cut(s)	130
Kpn2I	TCCGGA	1 cut(s)	1594
KroI	GCCGGC	1 cut(s)	32
KroNI	GCCGGC	1 cut(s)	34
Ksp22I	TGATCA	3 cut(s)	462, 966, 1213
Kzo9I	GATC	6 cut(s)	419, 462, 966, 1213, 1603, 2221
LguI	GCTCTTC	3 cut(s)	473, 849, 1992
LmnI	GCTCC	2 cut(s)	701, 1411
LweI	GCATC	2 cut(s)	1678, 2239
MabI	ACCWGGT	1 cut(s)	909
MaeI	CTAG	8 cut(s)	306, 894, 1226, 1478, 1628, 1652, 2117, 2129
MaeII	ACGT	3 cut(s)	1464, 1492, 2293
MaeIII	GTNAC	6 cut(s)	136, 1549, 1660, 2124, 2264, 2316
MalI	GATC	6 cut(s)	421, 464, 968, 1215, 1605, 2223
MboI	GATC	6 cut(s)	419, 462, 966, 1213, 1603, 2221
MboII	GAAGA	8 cut(s)	305, 377, 490, 694, 836, 1247, 1733, 1979
MfeI	CAATTG	1 cut(s)	174
MflI	RGATCY	2 cut(s)	1603, 2221
MhlI	GDGCHC	1 cut(s)	227
Mly113I	GGCGCC	1 cut(s)	1374
MlyI	GAGTC	4 cut(s)	1128, 1216, 1311, 2112
MmeI	TCCRAC	4 cut(s)	700, 1186, 1294, 2028
Mph1103I	ATGCAT	1 cut(s)	2254
MroI	TCCGGA	1 cut(s)	1594
MroNI	GCCGGC	1 cut(s)	32
MseI	TTAA	6 cut(s)	110, 245, 1262, 1362, 1437, 1713
MslI	CAYNNNNRTG	2 cut(s)	470, 2001
MspI	CCGG	3 cut(s)	33, 699, 1595
MspR9I	CCNGG	4 cut(s)	699, 911, 1304, 1848
MunI	CAATTG	1 cut(s)	174
Mva1269I	GAATGC	1 cut(s)	2252
MvaI	CCWGG	3 cut(s)	911, 1304, 1848
MvnI	CGCG	1 cut(s)	168
NaeI	GCCGGC	1 cut(s)	34
NarI	GGCGCC	1 cut(s)	1374
NciI	CCSGG	1 cut(s)	699
NdeII	GATC	6 cut(s)	419, 462, 966, 1213, 1603, 2221
NgoMIV	GCCGGC	1 cut(s)	32
NlaIII	CATG	8 cut(s)	463, 475, 611, 979, 1875, 1929, 2264, 2309
NlaIV	GGNNCC	4 cut(s)	131, 132, 868, 1375
NmeAIII	GCCGAG	1 cut(s)	291
NmuCI	GTSAC	2 cut(s)	1549, 2264
NsiI	ATGCAT	1 cut(s)	2254
NspI	RCATGY	3 cut(s)	475, 1929, 2309
PagI	TCATGA	2 cut(s)	607, 975
PciI	ACATGT	1 cut(s)	471
PciSI	GCTCTTC	3 cut(s)	473, 849, 1992
PcsI	WCGNNNNNNNCGW	1 cut(s)	1915
PctI	GAATGC	1 cut(s)	2252
PdiI	GCCGGC	1 cut(s)	34
PfeI	GAWTC	6 cut(s)	92, 542, 784, 1193, 1808, 2146
PflFI	GACNNNGTC	2 cut(s)	1241, 1905
PfoI	TCCNGGA	1 cut(s)	697
PleI	GAGTC	4 cut(s)	1128, 1216, 1311, 2111
PluTI	GGCGCC	1 cut(s)	1377
PmaCI	CACGTG	1 cut(s)	1465
PmlI	CACGTG	1 cut(s)	1465
PpsI	GAGTC	4 cut(s)	1128, 1216, 1311, 2111
Ppu21I	YACGTR	2 cut(s)	1465, 1493
PpuMI	RGGWCCY	1 cut(s)	130
PscI	ACATGT	1 cut(s)	471
PshAI	GACNNNNGTC	1 cut(s)	1226
Psp5II	RGGWCCY	1 cut(s)	130
Psp6I	CCWGG	3 cut(s)	909, 1302, 1846
PspCI	CACGTG	1 cut(s)	1465
PspEI	GGTNACC	1 cut(s)	2316
PspFI	CCCAGC	1 cut(s)	1279
PspGI	CCWGG	3 cut(s)	909, 1302, 1846
PspN4I	GGNNCC	4 cut(s)	131, 132, 868, 1375
PspPI	GGNCC	8 cut(s)	130, 866, 934, 1112, 1208, 1277, 1504, 1609
PspPPI	RGGWCCY	1 cut(s)	130
PstI	CTGCAG	1 cut(s)	840
PstNI	CAGNNNCTG	1 cut(s)	1553
PsuI	RGATCY	2 cut(s)	1603, 2221
PsyI	GACNNNGTC	2 cut(s)	1241, 1905
RsaI	GTAC	4 cut(s)	582, 1644, 1767, 2236
RsaNI	GTAC	4 cut(s)	581, 1643, 1766, 2235
RseI	CAYNNNNRTG	2 cut(s)	470, 2001
SapI	GCTCTTC	3 cut(s)	473, 849, 1992
SaqAI	TTAA	6 cut(s)	110, 245, 1262, 1362, 1437, 1713
Sau3AI	GATC	6 cut(s)	419, 462, 966, 1213, 1603, 2221
Sau96I	GGNCC	8 cut(s)	130, 866, 934, 1112, 1208, 1277, 1504, 1609
SchI	GAGTC	4 cut(s)	1128, 1216, 1311, 2112
ScrFI	CCNGG	4 cut(s)	699, 911, 1304, 1848
SduI	GDGCHC	1 cut(s)	227
SexAI	ACCWGGT	1 cut(s)	909
SfaNI	GCATC	2 cut(s)	1678, 2239
SfcI	CTRYAG	2 cut(s)	55, 836
SfoI	GGCGCC	1 cut(s)	1375
SinI	GGWCC	3 cut(s)	130, 934, 1208
SmiMI	CAYNNNNRTG	2 cut(s)	470, 2001
SsiI	CCGC	5 cut(s)	127, 1149, 1356, 2188, 2238
SspDI	GGCGCC	1 cut(s)	1373
SspI	AATATT	3 cut(s)	561, 1168, 1543
SspMI	CTAG	8 cut(s)	306, 894, 1226, 1478, 1628, 1652, 2117, 2129
StyD4I	CCNGG	4 cut(s)	697, 909, 1302, 1846
StyI	CCWWGG	3 cut(s)	384, 901, 1053
TaaI	ACNGT	8 cut(s)	222, 580, 757, 1108, 1339, 1501, 1905, 1919
TaiI	ACGT	3 cut(s)	1467, 1495, 2296
TaqI	TCGA	4 cut(s)	353, 1287, 2067, 2272
TatI	WGTACW	1 cut(s)	1765
TauI	GCSGC	2 cut(s)	1151, 1358
TfiI	GAWTC	6 cut(s)	92, 542, 784, 1193, 1808, 2146
Tru1I	TTAA	6 cut(s)	110, 245, 1262, 1362, 1437, 1713
Tru9I	TTAA	6 cut(s)	110, 245, 1262, 1362, 1437, 1713
TscAI	CASTG	5 cut(s)	227, 583, 1327, 1506, 1558
TseFI	GTSAC	2 cut(s)	1549, 2264
Tsp45I	GTSAC	2 cut(s)	1549, 2264
TspDTI	ATGAA	8 cut(s)	84, 327, 666, 948, 1023, 1647, 1720, 2223
TspGWI	ACGGA	1 cut(s)	2152
TspRI	CASTG	5 cut(s)	227, 583, 1327, 1506, 1558
Tth111I	GACNNNGTC	2 cut(s)	1241, 1905
VpaK11BI	GGWCC	3 cut(s)	130, 934, 1208
XapI	RAATTY	6 cut(s)	214, 349, 855, 1029, 1816, 1826
XbaI	TCTAGA	1 cut(s)	2116
XceI	RCATGY	3 cut(s)	475, 1929, 2309
XcmI	CCANNNNNNNNNTGG	2 cut(s)	1310, 1384
XmiI	GTMKAC	2 cut(s)	832, 2039
XspI	CTAG	8 cut(s)	306, 894, 1226, 1478, 1628, 1652, 2117, 2129
Zsp2I	ATGCAT	1 cut(s)	2254

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.