AT1G77122

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0015334
Physical Location & Seq
Reverse (-)
28977357 .. 28978750
1394 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G77122.1

Sequence Viewer

Length: 972 bp
ATGGATTTGTTGTTCTGTTTCCGACCGAATCAGACTTGTCGGGGAATTTCAGTTTTGCCTGCTTTTAGCATAAGCAATCTTTCCGCCGTCAATCGTTTCCGTTCGACGACGAGTCTTCGTTTTGGATTTCCGGCGACGCCGTTTCGTCGGACTCCAAACTTTACCTTCAAAACTCACGCGAAGAGGAAGAATAAAACGAGTACTTTCGAACCGAAACCGAATAAAGTCGAAGAGTTGATCATTGAAGAAGAAGAAGAAGAAGAAGAAGAAGAGGAGATAGTTCTTCCCGAAGAGATTCAAGAGAATCAAGACGAGTTGCTACTGGATGATGAATATGACGAAGACGATGACGATGACTTTGAGTTCGATGAGAGCGAGGAGGAGCTCTATGCTGGAGATGGTGGTGGTGGAGGAGGCATCAAACTTGCTGGAACATTATGGGACAAAGTAGCATTAGCATTAGCTGTGAAAGTTTGTGAGTCTTTTGATGGTGATTTAGGCATTTATGCCTTCAAGACTCTGCCAAATTCAACCATACAAGTGAGAATCGAGCGGCTCACTAACAAGTTTGGTTCACCAACAATGGAAGACATTGAAGCATTTTCAACAATCTACCGAGCAAAATTGGCTGAAGCAGAACTCGCCAAGTCAATACCGGACAATATCTCTCTAGAGGTTTCATCTCCTGGTGTCGAAAGGGTAGTACGAATTCCGCAGGATCTTGATCGGTATAAGGATAGACCGATGTACGTGAGGTACACTAACGAGGACACTGAGACCGAAGGTGATGGTATTTTCAGGCTGGTTTCTTTCGATGTGGAAGCTAAAATCTGCATTTGGGGCATAGCAGATATAAGAGTAAACCGAGAAAAGGCCGGCAAAGGAAGACCTTTGAGCAAGAAGCAAAGAGAATGGCGACTCGAAACGGCTTTCGAGTCACTACGGTTAGTCCGTTTGCATTCTGAATGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF150

Protein Analysis

323

Amino Acids

36.88

Weight (kDa)

4.65

Isoelectric Point (pI)

54.41

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF7912 PF25498 234 - 320 1.7e-35 Domain of unknown function (DUF7912)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015334)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G77122
fragaria_vesca FvH4_2g14620
malus_domestica MD05G1016000.v1.1
prunus_persica Prupe.8G019400_v2.0.a1
pyrus_communis pycom05g00880
rosa_chinensis RchiOBHm_Chr6g0277091
rosa_laevigata RLG00000013334
rosa_roxburghii Rroxscaffold_7G00191620
rosa_rugosa Rorug06G0106300
rosa_samantha Rh6AG216300 Rh6BG220900 Rh6CG213700 Rh6CG213900 Rh6CG223700 Rh6DG213300
rosa_wichuraiana Rw6G018870

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 553
AccII CGCG 1 cut(s) 179
AciI CCGC 3 cut(s) 84, 553, 713
AclWI GGATC 1 cut(s) 726
AcsI RAATTY 3 cut(s) 45, 526, 708
AcuI CTGAAG 1 cut(s) 651
AcyI GRCGYC 1 cut(s) 137
AfaI GTAC 4 cut(s) 202, 705, 749, 758
AfiI CCNNNNNNNGG 1 cut(s) 871
AgsI TTSAA 7 cut(s) 169, 245, 299, 514, 531, 596, 606
AhdI GACNNNNNGTC 1 cut(s) 111
AjnI CCWGG 1 cut(s) 685
AloI GAACNNNNNNTCC 1 cut(s) 28
AluBI AGCT 3 cut(s) 385, 464, 824
AluI AGCT 3 cut(s) 385, 464, 824
Alw21I GWGCWC 1 cut(s) 387
Alw26I GTCTC 1 cut(s) 770
AlwI GGATC 1 cut(s) 726
AoxI GGCC 1 cut(s) 873
ApoI RAATTY 3 cut(s) 45, 526, 708
ArsI GACNNNNNNTTYG 4 cut(s) 341, 347, 373, 379
Asp700I GAANNNNTTC 1 cut(s) 294
AsuHPI GGTGA 3 cut(s) 503, 567, 797
AsuII TTCGAA 1 cut(s) 207
BanII GRGCYC 1 cut(s) 387
BbsI GAAGAC 4 cut(s) 107, 348, 594, 892
Bbv12I GWGCWC 1 cut(s) 387
BccI CCATC 3 cut(s) 392, 482, 782
BceAI ACGGC 3 cut(s) 71, 124, 942
BciT130I CCWGG 1 cut(s) 687
BclI TGATCA 1 cut(s) 237
BcoDI GTCTC 1 cut(s) 770
BfaI CTAG 1 cut(s) 671
BisI GCNGC 1 cut(s) 554
BlsI GCNGC 1 cut(s) 555
BmcAI AGTACT 1 cut(s) 202
Bme1390I CCNGG 1 cut(s) 687
BmeRI GACNNNNNGTC 1 cut(s) 111
BmrFI CCNGG 1 cut(s) 687
BmsI GCATC 1 cut(s) 426
BpiI GAAGAC 4 cut(s) 107, 348, 594, 892
BpmI CTGGAG 1 cut(s) 414
Bpu14I TTCGAA 1 cut(s) 207
BsaAI YACGTR 1 cut(s) 751
BsaBI GATNNNNATC 1 cut(s) 723
BsaHI GRCGYC 1 cut(s) 137
BsaI GGTCTC 1 cut(s) 770
BsaWI WCCGGW 1 cut(s) 655
Bsc4I CCNNNNNNNGG 1 cut(s) 871
Bse118I RCCGGY 1 cut(s) 875
Bse1I ACTGG 1 cut(s) 327
Bse8I GATNNNNATC 1 cut(s) 723
BseBI CCWGG 1 cut(s) 687
BseGI GGATG 1 cut(s) 331
BseJI GATNNNNATC 1 cut(s) 723
BseLI CCNNNNNNNGG 1 cut(s) 871
BseMII CTCAG 1 cut(s) 765
BseNI ACTGG 1 cut(s) 327
BseRI GAGGAG 4 cut(s) 287, 392, 395, 426
Bsh1236I CGCG 1 cut(s) 179
Bsh1285I CGRYCG 1 cut(s) 26
BshFI GGCC 1 cut(s) 875
BsiEI CGRYCG 1 cut(s) 26
BsiHKAI GWGCWC 1 cut(s) 387
BsiSI CCGG 3 cut(s) 131, 656, 876
BslFI GGGAC 1 cut(s) 455
BslI CCNNNNNNNGG 1 cut(s) 871
BsmAI GTCTC 1 cut(s) 770
BsmFI GGGAC 1 cut(s) 455
BsmI GAATGC 1 cut(s) 958
BsnI GGCC 1 cut(s) 875
Bso31I GGTCTC 1 cut(s) 770
Bsp119I TTCGAA 1 cut(s) 207
Bsp1286I GDGCHC 1 cut(s) 387
Bsp143I GATC 3 cut(s) 237, 718, 724
BspACI CCGC 3 cut(s) 84, 553, 713
BspANI GGCC 1 cut(s) 875
BspCNI CTCAG 1 cut(s) 766
BspFNI CGCG 1 cut(s) 179
BspPI GGATC 1 cut(s) 726
BspT104I TTCGAA 1 cut(s) 207
BspTNI GGTCTC 1 cut(s) 770
BsrBI CCGCTC 1 cut(s) 553
BsrFI RCCGGY 1 cut(s) 875
BsrI ACTGG 1 cut(s) 327
BssAI RCCGGY 1 cut(s) 875
BssMI GATC 3 cut(s) 237, 718, 724
BssNI GRCGYC 1 cut(s) 137
Bst2UI CCWGG 1 cut(s) 687
Bst4CI ACNGT 1 cut(s) 945
Bst6I CTCTTC 4 cut(s) 176, 225, 264, 285
BstACI GRCGYC 1 cut(s) 137
BstBAI YACGTR 1 cut(s) 751
BstBI TTCGAA 1 cut(s) 207
BstC8I GCNNGC 2 cut(s) 60, 877
BstDEI CTNAG 1 cut(s) 774
BstF5I GGATG 1 cut(s) 331
BstFNI CGCG 1 cut(s) 179
BstKTI GATC 3 cut(s) 240, 721, 727
BstMAI GTCTC 1 cut(s) 770
BstMBI GATC 3 cut(s) 237, 718, 724
BstMCI CGRYCG 1 cut(s) 26
BstMWI GCNNNNNNNGC 3 cut(s) 626, 641, 840
BstNI CCWGG 1 cut(s) 687
BstSCI CCNGG 1 cut(s) 685
BstUI CGCG 1 cut(s) 179
BstV2I GAAGAC 4 cut(s) 107, 348, 594, 892
BstX2I RGATCY 1 cut(s) 718
BstYI RGATCY 1 cut(s) 718
BsuRI GGCC 1 cut(s) 875
BtsCI GGATG 1 cut(s) 331
BtsIMutI CAGTG 1 cut(s) 771
Cac8I GCNNGC 2 cut(s) 60, 877
Cfr10I RCCGGY 1 cut(s) 875
CseI GACGC 1 cut(s) 145
Csp6I GTAC 4 cut(s) 201, 704, 748, 757
CviJI RGCY 8 cut(s) 385, 464, 556, 629, 802, 824, 875, 929
CviKI_1 RGCY 8 cut(s) 385, 464, 556, 629, 802, 824, 875, 929
CviQI GTAC 4 cut(s) 201, 704, 748, 757
DdeI CTNAG 1 cut(s) 774
DpnI GATC 3 cut(s) 239, 720, 726
DpnII GATC 3 cut(s) 237, 718, 724
DriI GACNNNNNGTC 1 cut(s) 111
Eam1104I CTCTTC 4 cut(s) 176, 225, 264, 285
Eam1105I GACNNNNNGTC 1 cut(s) 111
EarI CTCTTC 4 cut(s) 176, 225, 264, 285
EciI GGCGGA 1 cut(s) 73
Ecl136II GAGCTC 1 cut(s) 385
Eco24I GRGCYC 1 cut(s) 387
Eco31I GGTCTC 1 cut(s) 770
Eco53kI GAGCTC 1 cut(s) 385
Eco57I CTGAAG 1 cut(s) 651
EcoICRI GAGCTC 1 cut(s) 385
EcoRI GAATTC 1 cut(s) 708
EcoRII CCWGG 1 cut(s) 685
EcoT38I GRGCYC 1 cut(s) 387
FaiI YATR 9 cut(s) 71, 336, 390, 439, 507, 536, 732, 845, 854
FaqI GGGAC 1 cut(s) 455
FbaI TGATCA 1 cut(s) 237
Fnu4HI GCNGC 1 cut(s) 554
FokI GGATG 1 cut(s) 338
FriOI GRGCYC 1 cut(s) 387
Fsp4HI GCNGC 1 cut(s) 554
FspBI CTAG 1 cut(s) 671
GluI GCNGC 1 cut(s) 554
GsuI CTGGAG 1 cut(s) 414
HaeIII GGCC 1 cut(s) 875
HapII CCGG 3 cut(s) 131, 656, 876
HgaI GACGC 1 cut(s) 145
Hin1I GRCGYC 1 cut(s) 137
HpaII CCGG 3 cut(s) 131, 656, 876
HphI GGTGA 3 cut(s) 503, 567, 797
Hpy166II GTNNAC 3 cut(s) 575, 759, 862
Hpy188I TCNGA 4 cut(s) 23, 33, 150, 964
Hpy188III TCNNGA 6 cut(s) 287, 299, 308, 514, 671, 722
Hpy8I GTNNAC 3 cut(s) 575, 759, 862
Hpy99I CGWCG 4 cut(s) 109, 112, 139, 150
HpyAV CCTTC 3 cut(s) 175, 520, 776
HpyCH4III ACNGT 1 cut(s) 945
HpyCH4IV ACGT 1 cut(s) 750
HpyCH4V TGCA 2 cut(s) 834, 958
HpyF10VI GCNNNNNNNGC 3 cut(s) 626, 641, 840
HpyF3I CTNAG 1 cut(s) 774
HpySE526I ACGT 1 cut(s) 750
Hsp92I GRCGYC 1 cut(s) 137
KroI GCCGGC 1 cut(s) 875
KroNI GCCGGC 1 cut(s) 877
Ksp22I TGATCA 1 cut(s) 237
Kzo9I GATC 3 cut(s) 237, 718, 724
LmnI GCTCC 1 cut(s) 382
LweI GCATC 1 cut(s) 426
MaeI CTAG 1 cut(s) 671
MaeII ACGT 1 cut(s) 750
MaeIII GTNAC 1 cut(s) 936
MalI GATC 3 cut(s) 239, 720, 726
MbiI CCGCTC 1 cut(s) 553
MboI GATC 3 cut(s) 237, 718, 724
MflI RGATCY 1 cut(s) 718
MhlI GDGCHC 1 cut(s) 387
MluCI AATT 4 cut(s) 45, 526, 623, 708
MlyI GAGTC 6 cut(s) 121, 145, 488, 511, 912, 944
MmeI TCCRAC 2 cut(s) 46, 128
MnlI CCTC 9 cut(s) 177, 265, 370, 373, 404, 407, 667, 747, 760
MroNI GCCGGC 1 cut(s) 875
MroXI GAANNNNTTC 1 cut(s) 294
MslI CAYNNNNRTG 1 cut(s) 539
MspI CCGG 3 cut(s) 131, 656, 876
MspR9I CCNGG 1 cut(s) 687
Mva1269I GAATGC 1 cut(s) 958
MvaI CCWGG 1 cut(s) 687
MvnI CGCG 1 cut(s) 179
MwoI GCNNNNNNNGC 3 cut(s) 626, 641, 840
NaeI GCCGGC 1 cut(s) 877
NdeII GATC 3 cut(s) 237, 718, 724
NgoMIV GCCGGC 1 cut(s) 875
NmuCI GTSAC 1 cut(s) 936
NspV TTCGAA 1 cut(s) 207
PcsI WCGNNNNNNNCGW 2 cut(s) 372, 949
PctI GAATGC 1 cut(s) 958
PdiI GCCGGC 1 cut(s) 877
PdmI GAANNNNTTC 1 cut(s) 294
PfeI GAWTC 4 cut(s) 28, 295, 304, 546
PkrI GCNGC 1 cut(s) 555
PleI GAGTC 6 cut(s) 120, 145, 487, 511, 912, 943
PpsI GAGTC 6 cut(s) 120, 145, 487, 511, 912, 943
Ppu21I YACGTR 1 cut(s) 751
Psp124BI GAGCTC 1 cut(s) 387
Psp6I CCWGG 1 cut(s) 685
PspGI CCWGG 1 cut(s) 685
PsuI RGATCY 1 cut(s) 718
RsaI GTAC 4 cut(s) 202, 705, 749, 758
RsaNI GTAC 4 cut(s) 201, 704, 748, 757
RseI CAYNNNNRTG 1 cut(s) 539
SacI GAGCTC 1 cut(s) 387
SatI GCNGC 1 cut(s) 554
Sau3AI GATC 3 cut(s) 237, 718, 724
ScaI AGTACT 1 cut(s) 202
SchI GAGTC 6 cut(s) 121, 145, 488, 511, 912, 944
ScrFI CCNGG 1 cut(s) 687
SduI GDGCHC 1 cut(s) 387
SetI ASST 9 cut(s) 167, 387, 466, 678, 753, 758, 787, 826, 892
SfaNI GCATC 1 cut(s) 426
SfuI TTCGAA 1 cut(s) 207
SmiMI CAYNNNNRTG 1 cut(s) 539
Sse9I AATT 4 cut(s) 45, 526, 623, 708
SsiI CCGC 3 cut(s) 84, 553, 713
SspMI CTAG 1 cut(s) 671
SstI GAGCTC 1 cut(s) 387
StyD4I CCNGG 1 cut(s) 685
TaaI ACNGT 1 cut(s) 945
TaiI ACGT 1 cut(s) 753
TaqI TCGA 9 cut(s) 104, 207, 228, 366, 549, 693, 813, 921, 933
TaqII GACCGA 3 cut(s) 40, 757, 794
TasI AATT 4 cut(s) 45, 526, 623, 708
TatI WGTACW 1 cut(s) 200
TauI GCSGC 1 cut(s) 556
TfiI GAWTC 4 cut(s) 28, 295, 304, 546
TscAI CASTG 1 cut(s) 778
TseFI GTSAC 1 cut(s) 936
Tsp45I GTSAC 1 cut(s) 936
TspDTI ATGAA 2 cut(s) 345, 669
TspGWI ACGGA 2 cut(s) 89, 941
TspRI CASTG 1 cut(s) 778
XapI RAATTY 3 cut(s) 45, 526, 708
XbaI TCTAGA 1 cut(s) 670
XmnI GAANNNNTTC 1 cut(s) 294
XspI CTAG 1 cut(s) 671
ZrmI AGTACT 1 cut(s) 202
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.