Rh6CG213700

RimP N-terminal domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6C
OG0015334
Physical Location & Seq
Forward (+)
35436568 .. 35437306
739 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6CG213700.1

Sequence Viewer

Length: 348 bp
ATGGAAGACATAGAAGCTTTTTCTAGAACCTATAGAACAAGACTGGACAAAGCAGAGCTTGCTCGATTAGTACCTGAGAATTTATGTCTTGAGGTGTCATCTCCAGGTGTAGAAAGGGTAGTTCGGATTCCACAAGATTTGGATCGGTATAAAGATCGACCTATGTATGTAAAATATGTAACTGAGACGGATGCAACTGGTTCATTGTCAGAAAGTGATCGATGGCGTTTTCAGGCTTGTTTCTTTCGATATGGAAACAAAATGTTGCATCTGGGGTGTAGCAGACGCGAGCTGAAAAAGCAGAAAAAGGGAGACCACTTAACAAAAAGCAGCGGGAGTGGCGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF150

Protein Analysis

115

Amino Acids

13.37

Weight (kDa)

9.05

Isoelectric Point (pI)

52.56

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF7912 PF25498 40 - 110 3.7e-09 Domain of unknown function (DUF7912)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0015334)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G77122
fragaria_vesca FvH4_2g14620
malus_domestica MD05G1016000.v1.1
prunus_persica Prupe.8G019400_v2.0.a1
pyrus_communis pycom05g00880
rosa_chinensis RchiOBHm_Chr6g0277091
rosa_laevigata RLG00000013334
rosa_roxburghii Rroxscaffold_7G00191620
rosa_rugosa Rorug06G0106300
rosa_samantha Rh6AG216300 Rh6BG220900 Rh6CG213700 Rh6CG213900 Rh6CG223700 Rh6DG213300
rosa_wichuraiana Rw6G018870

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 288
AciI CCGC 1 cut(s) 333
AclWI GGATC 1 cut(s) 150
AcsI RAATTY 1 cut(s) 79
AfaI GTAC 1 cut(s) 72
AjnI CCWGG 1 cut(s) 103
AluBI AGCT 3 cut(s) 17, 58, 292
AluI AGCT 3 cut(s) 17, 58, 292
Alw26I GTCTC 2 cut(s) 179, 306
AlwI GGATC 1 cut(s) 150
ApeKI GCWGC 1 cut(s) 330
ApoI RAATTY 1 cut(s) 79
BbsI GAAGAC 1 cut(s) 12
BbvI GCAGC 1 cut(s) 342
BccI CCATC 1 cut(s) 216
BciT130I CCWGG 1 cut(s) 105
BcoDI GTCTC 2 cut(s) 179, 306
BfaI CTAG 1 cut(s) 24
BfmI CTRYAG 1 cut(s) 31
BisI GCNGC 1 cut(s) 331
BlsI GCNGC 1 cut(s) 332
Bme1390I CCNGG 1 cut(s) 105
BmrFI CCNGG 1 cut(s) 105
BmsI GCATC 2 cut(s) 181, 277
BpiI GAAGAC 1 cut(s) 12
BpmI CTGGAG 1 cut(s) 87
BpuEI CTTGAG 1 cut(s) 110
Bsa29I ATCGAT 1 cut(s) 220
BsaBI GATNNNNATC 1 cut(s) 141
BsaI GGTCTC 1 cut(s) 306
Bse1I ACTGG 2 cut(s) 48, 202
Bse8I GATNNNNATC 1 cut(s) 141
BseBI CCWGG 1 cut(s) 105
BseCI ATCGAT 1 cut(s) 220
BseGI GGATG 1 cut(s) 196
BseJI GATNNNNATC 1 cut(s) 141
BseMII CTCAG 2 cut(s) 66, 174
BseNI ACTGG 2 cut(s) 48, 202
BseXI GCAGC 1 cut(s) 342
Bsh1236I CGCG 1 cut(s) 288
BshVI ATCGAT 1 cut(s) 220
BsmAI GTCTC 2 cut(s) 179, 306
BsmBI CGTCTC 1 cut(s) 179
Bso31I GGTCTC 1 cut(s) 306
Bsp143I GATC 3 cut(s) 142, 154, 217
BspACI CCGC 1 cut(s) 333
BspCNI CTCAG 2 cut(s) 67, 175
BspDI ATCGAT 1 cut(s) 220
BspFNI CGCG 1 cut(s) 288
BspPI GGATC 1 cut(s) 150
BspTNI GGTCTC 1 cut(s) 306
BsrI ACTGG 2 cut(s) 48, 202
BssMI GATC 3 cut(s) 142, 154, 217
Bst2UI CCWGG 1 cut(s) 105
BstAPI GCANNNNNTGC 1 cut(s) 59
BstC8I GCNNGC 2 cut(s) 60, 290
BstDEI CTNAG 2 cut(s) 75, 183
BstF5I GGATG 1 cut(s) 196
BstFNI CGCG 1 cut(s) 288
BstKTI GATC 3 cut(s) 145, 157, 220
BstMAI GTCTC 2 cut(s) 179, 306
BstMBI GATC 3 cut(s) 142, 154, 217
BstMWI GCNNNNNNNGC 3 cut(s) 59, 298, 339
BstNI CCWGG 1 cut(s) 105
BstSCI CCNGG 1 cut(s) 103
BstSFI CTRYAG 1 cut(s) 31
BstUI CGCG 1 cut(s) 288
BstV1I GCAGC 1 cut(s) 342
BstV2I GAAGAC 1 cut(s) 12
Bsu15I ATCGAT 1 cut(s) 220
BsuTUI ATCGAT 1 cut(s) 220
BtsCI GGATG 1 cut(s) 196
Cac8I GCNNGC 2 cut(s) 60, 290
ClaI ATCGAT 1 cut(s) 220
CseI GACGC 1 cut(s) 294
Csp6I GTAC 1 cut(s) 71
CspCI CAANNNNNGTGG 2 cut(s) 120, 155
CviJI RGCY 4 cut(s) 17, 58, 236, 292
CviKI_1 RGCY 4 cut(s) 17, 58, 236, 292
CviQI GTAC 1 cut(s) 71
DdeI CTNAG 2 cut(s) 75, 183
DpnI GATC 3 cut(s) 144, 156, 219
DpnII GATC 3 cut(s) 142, 154, 217
Eco31I GGTCTC 1 cut(s) 306
EcoRII CCWGG 1 cut(s) 103
Esp3I CGTCTC 1 cut(s) 179
FaiI YATR 8 cut(s) 11, 33, 85, 150, 164, 168, 177, 252
FalI AAGNNNNNCTT 2 cut(s) 42, 74
FauI CCCGC 1 cut(s) 326
Fnu4HI GCNGC 1 cut(s) 331
FokI GGATG 1 cut(s) 203
Fsp4HI GCNGC 1 cut(s) 331
FspBI CTAG 1 cut(s) 24
GluI GCNGC 1 cut(s) 331
GsuI CTGGAG 1 cut(s) 87
HgaI GACGC 1 cut(s) 294
HindIII AAGCTT 1 cut(s) 15
HinfI GANTC 1 cut(s) 127
Hpy188I TCNGA 2 cut(s) 126, 211
Hpy188III TCNNGA 2 cut(s) 24, 89
HpyCH4V TGCA 2 cut(s) 194, 268
HpyF10VI GCNNNNNNNGC 3 cut(s) 59, 298, 339
HpyF3I CTNAG 2 cut(s) 75, 183
Kzo9I GATC 3 cut(s) 142, 154, 217
LpnPI CCDG 7 cut(s) 29, 87, 90, 117, 183, 218, 257
Lsp1109I GCAGC 1 cut(s) 342
LweI GCATC 2 cut(s) 181, 277
MaeI CTAG 1 cut(s) 24
MaeIII GTNAC 1 cut(s) 178
MalI GATC 3 cut(s) 144, 156, 219
MboI GATC 3 cut(s) 142, 154, 217
MboII GAAGA 1 cut(s) 17
MluCI AATT 1 cut(s) 79
MnlI CCTC 1 cut(s) 85
MseI TTAA 1 cut(s) 320
MspA1I CMGCKG 1 cut(s) 333
MspR9I CCNGG 1 cut(s) 105
MvaI CCWGG 1 cut(s) 105
MvnI CGCG 1 cut(s) 288
MwoI GCNNNNNNNGC 3 cut(s) 59, 298, 339
NdeII GATC 3 cut(s) 142, 154, 217
PfeI GAWTC 1 cut(s) 127
PkrI GCNGC 1 cut(s) 332
Psp6I CCWGG 1 cut(s) 103
PspGI CCWGG 1 cut(s) 103
RsaI GTAC 1 cut(s) 72
RsaNI GTAC 1 cut(s) 71
SaqAI TTAA 1 cut(s) 320
SatI GCNGC 1 cut(s) 331
Sau3AI GATC 3 cut(s) 142, 154, 217
ScrFI CCNGG 1 cut(s) 105
SetI ASST 8 cut(s) 19, 32, 60, 76, 96, 109, 163, 294
SfaNI GCATC 2 cut(s) 181, 277
SfcI CTRYAG 1 cut(s) 31
SmlI CTYRAG 1 cut(s) 89
SmoI CTYRAG 1 cut(s) 89
Sse9I AATT 1 cut(s) 79
SsiI CCGC 1 cut(s) 333
SspMI CTAG 1 cut(s) 24
StyD4I CCNGG 1 cut(s) 103
TaqI TCGA 4 cut(s) 64, 157, 220, 247
TasI AATT 1 cut(s) 79
TfiI GAWTC 1 cut(s) 127
Tru1I TTAA 1 cut(s) 320
Tru9I TTAA 1 cut(s) 320
TseI GCWGC 1 cut(s) 330
TspDTI ATGAA 1 cut(s) 192
TspGWI ACGGA 1 cut(s) 203
XapI RAATTY 1 cut(s) 79
XbaI TCTAGA 1 cut(s) 23
XspI CTAG 1 cut(s) 24
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.