Prupe.8G019400_v2.0.a1

RimP N-terminal domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp08
OG0015334
Physical Location & Seq
Reverse (-)
1786949 .. 1790292
3344 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.8G019400.1

Sequence Viewer

Length: 945 bp
ATGGACTTAACCACAACATGGAATTTGAGAGCCTCTGCAGTTTCATTGTCACCAATCGTCACTAGGAGAAGTAGAACCCACTTGCAGCGCCCTTCTCTCTCACCTCCTCCTAAGCTCTCTTGCCAATTCTGGGCTTACCCATTTCCCTTTATTCCAAACAAGTTCCCTGCACTTCACGCCCGCAATCGAAACTCAGAGCCTGAGCCACTTCTCAAACCAACCATTATCGAAGAAGTTTCAGAGGACGACGACGACGACGACGACGTTATCTTGGATGATTTCGAAGAAGATGAGGTATCAATGGATGATGAGGGTGATGATTACTACGAAGAAGAGTCTGCTGAACTCTATGCTGGAGATGGAGGCGGAGGCGGTGGAATTTCTCTTGCTGGGGTATGGTGGGATAACAAAGCATTAGAAATAGCTGAAGAAGTTATTCTGTCCTTTGATGGTGACCTGAAAATATACGCGTTTAAAACGTTGCCAAATTTTACCATCCAAGTGCGCATTGAGAAGCTTTCGAATAGATCTGGCTCCCCAAGTATGGAAGACATTGAAGCTTTTTCAAGAACCTATAGAGCACGACTGGATGAAGCAGAGCTTGCTAAATCACTTCCTGAGAATTTATCTCTGGAGGTGTCATCTCCAGGTGTTGAAAGGATAGTTCGGGTTCCACATGAGTTGGATCGGTTCAAAGATCGCCCTATGTATGTGAAATATTTCAGTGAGACGGCTGAAACTGGCGTAATTTCAGAAAATGATGGTGTTTTCAGGCTTGTTTCTTTTGATGTGGAAACAAAGTGTTGCGTTTGGGGTTTAGCAGACGTGAGGATTAATAGAGAAAAAGCAGGAAAAGGGAGACCACTTAGCAAAAAGCAGCGGCAGTGGCAATTGAACACACCCTTTGATTCGTTACGTTTAGTTCGGTTGTATTCTGATATCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF150

Protein Analysis

315

Amino Acids

35.68

Weight (kDa)

4.66

Isoelectric Point (pI)

54.84

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015334)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G77122
fragaria_vesca FvH4_2g14620
malus_domestica MD05G1016000.v1.1
prunus_persica Prupe.8G019400_v2.0.a1
pyrus_communis pycom05g00880
rosa_chinensis RchiOBHm_Chr6g0277091
rosa_laevigata RLG00000013334
rosa_roxburghii Rroxscaffold_7G00191620
rosa_rugosa Rorug06G0106300
rosa_samantha Rh6AG216300 Rh6BG220900 Rh6CG213700 Rh6CG213900 Rh6CG223700 Rh6DG213300
rosa_wichuraiana Rw6G018870

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 506
AccB7I CCANNNNNTGG 1 cut(s) 18
AccII CGCG 1 cut(s) 470
AciI CCGC 4 cut(s) 181, 366, 372, 880
AclI AACGTT 1 cut(s) 479
AclWI GGATC 1 cut(s) 693
AcsI RAATTY 4 cut(s) 22, 378, 487, 622
AcuI CTGAAG 1 cut(s) 447
AfiI CCNNNNNNNGG 3 cut(s) 18, 130, 544
AflIII ACRYGT 1 cut(s) 468
AgsI TTSAA 5 cut(s) 557, 567, 656, 694, 895
AjiI CACGTC 1 cut(s) 826
AjnI CCWGG 1 cut(s) 646
AluBI AGCT 5 cut(s) 115, 425, 517, 560, 601
AluI AGCT 5 cut(s) 115, 425, 517, 560, 601
Alw21I GWGCWC 1 cut(s) 583
Alw26I GTCTC 2 cut(s) 722, 853
AlwI GGATC 1 cut(s) 693
AlwNI CAGNNNCTG 1 cut(s) 200
ApeKI GCWGC 2 cut(s) 85, 877
ApoI RAATTY 4 cut(s) 22, 378, 487, 622
AseI ATTAAT 1 cut(s) 834
Asp700I GAANNNNTTC 2 cut(s) 435, 719
AspLEI GCGC 2 cut(s) 90, 507
AsuHPI GGTGA 4 cut(s) 42, 93, 326, 464
AsuII TTCGAA 2 cut(s) 282, 521
BbsI GAAGAC 1 cut(s) 555
Bbv12I GWGCWC 1 cut(s) 583
BbvI GCAGC 2 cut(s) 97, 889
BccI CCATC 4 cut(s) 353, 443, 503, 755
BceAI ACGGC 1 cut(s) 747
BciT130I CCWGG 1 cut(s) 648
BcoDI GTCTC 2 cut(s) 722, 853
BfaI CTAG 1 cut(s) 63
BfmI CTRYAG 2 cut(s) 36, 574
BfoI RGCGCY 1 cut(s) 91
BglII AGATCT 1 cut(s) 527
BisI GCNGC 3 cut(s) 86, 878, 881
BlsI GCNGC 3 cut(s) 87, 879, 882
Bme1390I CCNGG 1 cut(s) 648
BmgBI CACGTC 1 cut(s) 826
BmiI GGNNCC 2 cut(s) 535, 672
BmrFI CCNGG 1 cut(s) 648
BpiI GAAGAC 1 cut(s) 555
BpmI CTGGAG 3 cut(s) 375, 630, 653
Bpu10I CCTNAGC 2 cut(s) 111, 201
Bpu14I TTCGAA 2 cut(s) 282, 521
BsaI GGTCTC 1 cut(s) 853
Bsc4I CCNNNNNNNGG 3 cut(s) 18, 130, 544
Bse1I ACTGG 2 cut(s) 591, 745
BseBI CCWGG 1 cut(s) 648
BseGI GGATG 4 cut(s) 280, 310, 495, 595
BseLI CCNNNNNNNGG 3 cut(s) 18, 130, 544
BseMII CTCAG 3 cut(s) 192, 207, 609
BseNI ACTGG 2 cut(s) 591, 745
BseRI GAGGAG 1 cut(s) 96
BseXI GCAGC 2 cut(s) 97, 889
BseYI CCCAGC 1 cut(s) 389
BsgI GTGCAG 1 cut(s) 153
Bsh1236I CGCG 1 cut(s) 470
BsiHKAI GWGCWC 1 cut(s) 583
BslI CCNNNNNNNGG 3 cut(s) 18, 130, 544
BsmAI GTCTC 2 cut(s) 722, 853
BsmBI CGTCTC 1 cut(s) 722
Bso31I GGTCTC 1 cut(s) 853
Bsp119I TTCGAA 2 cut(s) 282, 521
Bsp1286I GDGCHC 1 cut(s) 583
Bsp143I GATC 3 cut(s) 527, 685, 697
BspACI CCGC 4 cut(s) 181, 366, 372, 880
BspCNI CTCAG 3 cut(s) 193, 206, 610
BspFNI CGCG 1 cut(s) 470
BspLI GGNNCC 2 cut(s) 535, 672
BspMAI CTGCAG 1 cut(s) 40
BspPI GGATC 1 cut(s) 693
BspT104I TTCGAA 2 cut(s) 282, 521
BspTNI GGTCTC 1 cut(s) 853
BsrI ACTGG 2 cut(s) 591, 745
BssMI GATC 3 cut(s) 527, 685, 697
Bst2UI CCWGG 1 cut(s) 648
Bst6I CTCTTC 1 cut(s) 327
BstAPI GCANNNNNTGC 1 cut(s) 602
BstBI TTCGAA 2 cut(s) 282, 521
BstC8I GCNNGC 2 cut(s) 181, 603
BstDEI CTNAG 5 cut(s) 111, 193, 201, 618, 866
BstEII GGTNACC 1 cut(s) 452
BstF5I GGATG 4 cut(s) 280, 310, 495, 595
BstFNI CGCG 1 cut(s) 470
BstH2I RGCGCY 1 cut(s) 91
BstHHI GCGC 2 cut(s) 90, 507
BstKTI GATC 3 cut(s) 530, 688, 700
BstMAI GTCTC 2 cut(s) 722, 853
BstMBI GATC 3 cut(s) 527, 685, 697
BstMWI GCNNNNNNNGC 3 cut(s) 176, 602, 886
BstNI CCWGG 1 cut(s) 648
BstPI GGTNACC 1 cut(s) 452
BstSCI CCNGG 1 cut(s) 646
BstSFI CTRYAG 2 cut(s) 36, 574
BstUI CGCG 1 cut(s) 470
BstV1I GCAGC 2 cut(s) 97, 889
BstV2I GAAGAC 1 cut(s) 555
BstX2I RGATCY 1 cut(s) 527
BstYI RGATCY 1 cut(s) 527
BtrI CACGTC 1 cut(s) 826
BtsCI GGATG 4 cut(s) 280, 310, 495, 595
BtsI GCAGTG 1 cut(s) 890
BtsIMutI CAGTG 2 cut(s) 730, 890
Cac8I GCNNGC 2 cut(s) 181, 603
CaiI CAGNNNCTG 1 cut(s) 200
CfoI GCGC 2 cut(s) 90, 507
CspCI CAANNNNNGTGG 2 cut(s) 663, 698
CviAII CATG 2 cut(s) 18, 677
DdeI CTNAG 5 cut(s) 111, 193, 201, 618, 866
DpnI GATC 3 cut(s) 529, 687, 699
DpnII GATC 3 cut(s) 527, 685, 697
DraI TTTAAA 1 cut(s) 475
Eam1104I CTCTTC 1 cut(s) 327
EarI CTCTTC 1 cut(s) 327
EciI GGCGGA 1 cut(s) 381
Eco31I GGTCTC 1 cut(s) 853
Eco32I GATATC 1 cut(s) 940
Eco57I CTGAAG 1 cut(s) 447
Eco91I GGTNACC 1 cut(s) 452
EcoO65I GGTNACC 1 cut(s) 452
EcoRII CCWGG 1 cut(s) 646
EcoRV GATATC 1 cut(s) 940
Esp3I CGTCTC 1 cut(s) 722
FaeI CATG 2 cut(s) 21, 680
FaiI YATR 9 cut(s) 19, 351, 397, 466, 545, 576, 678, 707, 711
FalI AAGNNNNNCTT 2 cut(s) 585, 617
FatI CATG 2 cut(s) 17, 676
FauI CCCGC 1 cut(s) 188
Fnu4HI GCNGC 3 cut(s) 86, 878, 881
FokI GGATG 4 cut(s) 287, 317, 482, 602
Fsp4HI GCNGC 3 cut(s) 86, 878, 881
FspAI RTGCGCAY 1 cut(s) 506
FspBI CTAG 1 cut(s) 63
FspI TGCGCA 1 cut(s) 506
GlaI GCGC 2 cut(s) 89, 506
GluI GCNGC 3 cut(s) 86, 878, 881
GsaI CCCAGC 1 cut(s) 393
GsuI CTGGAG 3 cut(s) 375, 630, 653
HaeII RGCGCY 1 cut(s) 91
HhaI GCGC 2 cut(s) 90, 507
Hin1II CATG 2 cut(s) 21, 680
Hin6I GCGC 2 cut(s) 88, 505
HinP1I GCGC 2 cut(s) 88, 505
HindIII AAGCTT 2 cut(s) 515, 558
HinfI GANTC 2 cut(s) 335, 908
HphI GGTGA 4 cut(s) 42, 93, 326, 464
Hpy188I TCNGA 5 cut(s) 196, 241, 754, 937, 944
Hpy188III TCNNGA 3 cut(s) 567, 617, 632
Hpy99I CGWCG 6 cut(s) 251, 254, 257, 260, 263, 266
HpyAV CCTTC 1 cut(s) 102
HpyCH4IV ACGT 4 cut(s) 264, 479, 825, 916
HpyCH4V TGCA 3 cut(s) 38, 85, 170
HpyF10VI GCNNNNNNNGC 3 cut(s) 176, 602, 886
HpyF3I CTNAG 5 cut(s) 111, 193, 201, 618, 866
HpySE526I ACGT 4 cut(s) 264, 479, 825, 916
Hsp92II CATG 2 cut(s) 21, 680
HspAI GCGC 2 cut(s) 88, 505
Kzo9I GATC 3 cut(s) 527, 685, 697
LmnI GCTCC 1 cut(s) 539
Lsp1109I GCAGC 2 cut(s) 97, 889
MaeI CTAG 1 cut(s) 63
MaeII ACGT 4 cut(s) 264, 479, 825, 916
MaeIII GTNAC 4 cut(s) 48, 58, 452, 912
MalI GATC 3 cut(s) 529, 687, 699
MboI GATC 3 cut(s) 527, 685, 697
MboII GAAGA 7 cut(s) 242, 296, 299, 341, 344, 440, 560
MfeI CAATTG 1 cut(s) 890
MflI RGATCY 1 cut(s) 527
MhlI GDGCHC 1 cut(s) 583
MluCI AATT 7 cut(s) 22, 125, 378, 487, 622, 747, 890
MluI ACGCGT 1 cut(s) 468
MlyI GAGTC 1 cut(s) 344
MmeI TCCRAC 1 cut(s) 663
MroXI GAANNNNTTC 2 cut(s) 435, 719
MseI TTAA 3 cut(s) 8, 474, 834
MslI CAYNNNNRTG 1 cut(s) 500
MspA1I CMGCKG 1 cut(s) 880
MspR9I CCNGG 1 cut(s) 648
MunI CAATTG 1 cut(s) 890
MvaI CCWGG 1 cut(s) 648
MvnI CGCG 1 cut(s) 470
MwoI GCNNNNNNNGC 3 cut(s) 176, 602, 886
NdeII GATC 3 cut(s) 527, 685, 697
NlaIII CATG 2 cut(s) 21, 680
NlaIV GGNNCC 2 cut(s) 535, 672
NmuCI GTSAC 3 cut(s) 48, 58, 452
NsbI TGCGCA 1 cut(s) 506
NspV TTCGAA 2 cut(s) 282, 521
PcsI WCGNNNNNNNCGW 4 cut(s) 252, 255, 258, 261
PdmI GAANNNNTTC 2 cut(s) 435, 719
PfeI GAWTC 1 cut(s) 908
PflMI CCANNNNNTGG 1 cut(s) 18
PkrI GCNGC 3 cut(s) 87, 879, 882
PleI GAGTC 1 cut(s) 343
PpsI GAGTC 1 cut(s) 343
PshBI ATTAAT 1 cut(s) 834
Psp1406I AACGTT 1 cut(s) 479
Psp6I CCWGG 1 cut(s) 646
PspEI GGTNACC 1 cut(s) 452
PspFI CCCAGC 1 cut(s) 389
PspGI CCWGG 1 cut(s) 646
PspN4I GGNNCC 2 cut(s) 535, 672
PstI CTGCAG 1 cut(s) 40
PstNI CAGNNNCTG 1 cut(s) 200
PsuI RGATCY 1 cut(s) 527
RseI CAYNNNNRTG 1 cut(s) 500
SaqAI TTAA 3 cut(s) 8, 474, 834
SatI GCNGC 3 cut(s) 86, 878, 881
Sau3AI GATC 3 cut(s) 527, 685, 697
SchI GAGTC 1 cut(s) 344
ScrFI CCNGG 1 cut(s) 648
SduI GDGCHC 1 cut(s) 583
SfcI CTRYAG 2 cut(s) 36, 574
SfuI TTCGAA 2 cut(s) 282, 521
SmiMI CAYNNNNRTG 1 cut(s) 500
Sse9I AATT 7 cut(s) 22, 125, 378, 487, 622, 747, 890
SsiI CCGC 4 cut(s) 181, 366, 372, 880
SspI AATATT 1 cut(s) 719
SspMI CTAG 1 cut(s) 63
StyD4I CCNGG 1 cut(s) 646
TaiI ACGT 4 cut(s) 267, 482, 828, 919
TaqI TCGA 4 cut(s) 187, 228, 282, 521
TasI AATT 7 cut(s) 22, 125, 378, 487, 622, 747, 890
TauI GCSGC 1 cut(s) 883
TfiI GAWTC 1 cut(s) 908
Tru1I TTAA 3 cut(s) 8, 474, 834
Tru9I TTAA 3 cut(s) 8, 474, 834
TscAI CASTG 2 cut(s) 730, 890
TseFI GTSAC 3 cut(s) 48, 58, 452
TseI GCWGC 2 cut(s) 85, 877
Tsp45I GTSAC 3 cut(s) 48, 58, 452
TspDTI ATGAA 2 cut(s) 33, 606
TspRI CASTG 2 cut(s) 730, 890
Van91I CCANNNNNTGG 1 cut(s) 18
VspI ATTAAT 1 cut(s) 834
XapI RAATTY 4 cut(s) 22, 378, 487, 622
XmnI GAANNNNTTC 2 cut(s) 435, 719
XspI CTAG 1 cut(s) 63
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.