pycom05g00880

RimP N-terminal domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr5
OG0015334
Physical Location & Seq
Reverse (-)
1071540 .. 1074502
2963 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom05g00880.4

Sequence Viewer

Length: 930 bp
ATGGACTCAACATTGAATTTCATAGCCTCTGCAGTTACATTCTCGCCAATCACATCCATCGCCAGGCCTTCTCTCTCACCTCACAACCTATCTTTCCAATTCCTGCCATGCCCAATTCCCTTTATTCCAAACAAGTCCTCTACCCTCCGCGCCCGCAAGCCGAACTCAGAGCCCGAGCCACTTCTCAAACCCACCATTATTGATGAAGTTTCAGAGGACGACGAAGACGACGACGTTATCTGGGACGACGAAGACGACGATGACGCATTAATGGATGATGAGGGTGATGATTATTACGAAGAGGATGAGTTTGTGGCGGATGCTGCTGAGCACTACGCTGGAGATGGAGGCGAAGGTGGTGGAATTTCTCTTGCTGGGACGTGGTGGGATGACAAAGCACTAGAAATAGCTGAAGAAGTTGTTCTGTCCCTTGATGGCGACTTGAAAATTTATGCGTTTAAAACGTTGCCAAATTTCAACATTCAAGTGCGCATTGAGAAGCTTTCGAATAAATCCGGCTCCCCGAGTATGGAAGATATTGAGTCTTTTTCTAGAGCCTATAGGGCAAAACTGGATGAAGCAGAGGTTGCTAAATCACTTCCTGAGAATTTATCTCTTGAGGTGTCATCTCCAGGCGTTGAAAGGGTAGTTCGGGTTCCACATGAGTTGGATCGGTTCAAAGAACGACCTATGTATGTGAAATATGTCAGTGAGACAGCTGAAACCGGTGCTCTGTCCGAAAGTGACGGTGTTTTCAGGCTTGTTTCTTTCGATGTGGAAACAAAAAGTTGCGTTTGGGGTTTAGCAGATGTAAGGATTAATAGAGAAAAGGCAGGAAAAGGAAGACCACTCAGCAAAAAGCAGCGGCAGTGGCAATTGAACACACCATTTGATTCCTTAGTTTTGGTTCGATTGTACTCTGACATTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF150

Protein Analysis

310

Amino Acids

34.55

Weight (kDa)

4.39

Isoelectric Point (pI)

43.69

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015334)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G77122
fragaria_vesca FvH4_2g14620
malus_domestica MD05G1016000.v1.1
prunus_persica Prupe.8G019400_v2.0.a1
pyrus_communis pycom05g00880
rosa_chinensis RchiOBHm_Chr6g0277091
rosa_laevigata RLG00000013334
rosa_roxburghii Rroxscaffold_7G00191620
rosa_rugosa Rorug06G0106300
rosa_samantha Rh6AG216300 Rh6BG220900 Rh6CG213700 Rh6CG213900 Rh6CG223700 Rh6DG213300
rosa_wichuraiana Rw6G018870

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 491
AccII CGCG 1 cut(s) 150
AciI CCGC 4 cut(s) 148, 154, 317, 865
AclI AACGTT 1 cut(s) 464
AclWI GGATC 1 cut(s) 678
AcsI RAATTY 5 cut(s) 16, 363, 447, 472, 607
AcuI CTGAAG 1 cut(s) 432
AfaI GTAC 1 cut(s) 917
AfiI CCNNNNNNNGG 2 cut(s) 63, 529
AgeI ACCGGT 1 cut(s) 725
AgsI TTSAA 7 cut(s) 16, 445, 478, 485, 641, 679, 880
AjiI CACGTC 1 cut(s) 381
AjnI CCWGG 2 cut(s) 62, 631
AluBI AGCT 3 cut(s) 410, 502, 719
AluI AGCT 3 cut(s) 410, 502, 719
Alw21I GWGCWC 2 cut(s) 333, 733
Alw26I GTCTC 1 cut(s) 707
AlwI GGATC 1 cut(s) 678
Ama87I CYCGRG 2 cut(s) 173, 523
AoxI GGCC 1 cut(s) 65
ApeKI GCWGC 2 cut(s) 323, 862
ApoI RAATTY 5 cut(s) 16, 363, 447, 472, 607
AseI ATTAAT 2 cut(s) 269, 819
AsiGI ACCGGT 1 cut(s) 725
Asp700I GAANNNNTTC 1 cut(s) 420
AspLEI GCGC 2 cut(s) 152, 492
AsuHPI GGTGA 2 cut(s) 69, 296
AsuII TTCGAA 1 cut(s) 506
AvaI CYCGRG 2 cut(s) 173, 523
BanII GRGCYC 1 cut(s) 174
BbsI GAAGAC 3 cut(s) 231, 258, 850
Bbv12I GWGCWC 2 cut(s) 333, 733
BbvI GCAGC 2 cut(s) 310, 874
BccI CCATC 3 cut(s) 65, 338, 428
BciT130I CCWGG 2 cut(s) 64, 633
BcoDI GTCTC 1 cut(s) 707
BfaI CTAG 2 cut(s) 401, 552
BfmI CTRYAG 2 cut(s) 30, 559
BglI GCCNNNNNGGC 1 cut(s) 563
BisI GCNGC 3 cut(s) 324, 863, 866
BlpI GCTNAGC 1 cut(s) 327
BlsI GCNGC 3 cut(s) 325, 864, 867
Bme1390I CCNGG 2 cut(s) 64, 633
BmeT110I CYCGRG 2 cut(s) 173, 523
BmgBI CACGTC 1 cut(s) 381
BmiI GGNNCC 2 cut(s) 520, 657
BmrFI CCNGG 2 cut(s) 64, 633
BmsI GCATC 1 cut(s) 310
BpiI GAAGAC 3 cut(s) 231, 258, 850
BpmI CTGGAG 2 cut(s) 360, 615
Bpu1102I GCTNAGC 1 cut(s) 327
Bpu14I TTCGAA 1 cut(s) 506
BpuEI CTTGAG 1 cut(s) 638
BsaWI WCCGGW 1 cut(s) 725
Bsc4I CCNNNNNNNGG 2 cut(s) 63, 529
Bse118I RCCGGY 1 cut(s) 725
Bse1I ACTGG 1 cut(s) 576
BseBI CCWGG 2 cut(s) 64, 633
BseGI GGATG 6 cut(s) 53, 280, 310, 325, 394, 580
BseLI CCNNNNNNNGG 2 cut(s) 63, 529
BseMII CTCAG 4 cut(s) 180, 318, 594, 865
BseNI ACTGG 1 cut(s) 576
BseXI GCAGC 2 cut(s) 310, 874
BseYI CCCAGC 1 cut(s) 374
Bsh1236I CGCG 1 cut(s) 150
BshFI GGCC 1 cut(s) 67
BshTI ACCGGT 1 cut(s) 725
BsiHKAI GWGCWC 2 cut(s) 333, 733
BsiHKCI CYCGRG 2 cut(s) 173, 523
BsiSI CCGG 2 cut(s) 516, 726
BslFI GGGAC 3 cut(s) 257, 391, 412
BslI CCNNNNNNNGG 2 cut(s) 63, 529
BsmAI GTCTC 1 cut(s) 707
BsmFI GGGAC 3 cut(s) 257, 391, 412
BsnI GGCC 1 cut(s) 67
BsoBI CYCGRG 2 cut(s) 173, 523
Bsp119I TTCGAA 1 cut(s) 506
Bsp1286I GDGCHC 3 cut(s) 174, 333, 733
Bsp143I GATC 1 cut(s) 670
Bsp1720I GCTNAGC 1 cut(s) 327
BspACI CCGC 4 cut(s) 148, 154, 317, 865
BspANI GGCC 1 cut(s) 67
BspCNI CTCAG 4 cut(s) 179, 319, 595, 864
BspFNI CGCG 1 cut(s) 150
BspLI GGNNCC 2 cut(s) 520, 657
BspMAI CTGCAG 1 cut(s) 34
BspPI GGATC 1 cut(s) 678
BspT104I TTCGAA 1 cut(s) 506
BsrFI RCCGGY 1 cut(s) 725
BsrI ACTGG 1 cut(s) 576
BssAI RCCGGY 1 cut(s) 725
BssMI GATC 1 cut(s) 670
Bst2UI CCWGG 2 cut(s) 64, 633
Bst4CI ACNGT 1 cut(s) 749
Bst6I CTCTTC 1 cut(s) 294
BstAPI GCANNNNNTGC 1 cut(s) 587
BstBI TTCGAA 1 cut(s) 506
BstC8I GCNNGC 2 cut(s) 154, 158
BstDEI CTNAG 5 cut(s) 166, 327, 603, 851, 898
BstF5I GGATG 6 cut(s) 53, 280, 310, 325, 394, 580
BstFNI CGCG 1 cut(s) 150
BstHHI GCGC 2 cut(s) 152, 492
BstKTI GATC 1 cut(s) 673
BstMAI GTCTC 1 cut(s) 707
BstMBI GATC 1 cut(s) 670
BstMWI GCNNNNNNNGC 4 cut(s) 323, 563, 587, 871
BstNI CCWGG 2 cut(s) 64, 633
BstSCI CCNGG 2 cut(s) 62, 631
BstSFI CTRYAG 2 cut(s) 30, 559
BstUI CGCG 1 cut(s) 150
BstV1I GCAGC 2 cut(s) 310, 874
BstV2I GAAGAC 3 cut(s) 231, 258, 850
BsuRI GGCC 1 cut(s) 67
BtgZI GCGATG 1 cut(s) 43
BtrI CACGTC 1 cut(s) 381
BtsCI GGATG 6 cut(s) 53, 280, 310, 325, 394, 580
BtsI GCAGTG 1 cut(s) 875
BtsIMutI CAGTG 2 cut(s) 715, 875
Cac8I GCNNGC 2 cut(s) 154, 158
CfoI GCGC 2 cut(s) 152, 492
Cfr10I RCCGGY 1 cut(s) 725
CseI GACGC 1 cut(s) 272
Csp6I GTAC 1 cut(s) 916
CspAI ACCGGT 1 cut(s) 725
CspCI CAANNNNNGTGG 4 cut(s) 181, 216, 648, 683
CviAII CATG 2 cut(s) 108, 662
CviQI GTAC 1 cut(s) 916
DdeI CTNAG 5 cut(s) 166, 327, 603, 851, 898
DpnI GATC 1 cut(s) 672
DpnII GATC 1 cut(s) 670
DraI TTTAAA 1 cut(s) 460
Eam1104I CTCTTC 1 cut(s) 294
EarI CTCTTC 1 cut(s) 294
EciI GGCGGA 1 cut(s) 332
Eco147I AGGCCT 1 cut(s) 67
Eco24I GRGCYC 1 cut(s) 174
Eco57I CTGAAG 1 cut(s) 432
Eco88I CYCGRG 2 cut(s) 173, 523
EcoRII CCWGG 2 cut(s) 62, 631
EcoT38I GRGCYC 1 cut(s) 174
FaeI CATG 2 cut(s) 111, 665
FaiI YATR 9 cut(s) 23, 109, 453, 530, 561, 663, 692, 696, 705
FaqI GGGAC 3 cut(s) 257, 391, 412
FatI CATG 2 cut(s) 107, 661
FauI CCCGC 1 cut(s) 161
Fnu4HI GCNGC 3 cut(s) 324, 863, 866
FokI GGATG 6 cut(s) 40, 287, 317, 332, 401, 587
FriOI GRGCYC 1 cut(s) 174
Fsp4HI GCNGC 3 cut(s) 324, 863, 866
FspAI RTGCGCAY 1 cut(s) 491
FspBI CTAG 2 cut(s) 401, 552
FspI TGCGCA 1 cut(s) 491
GlaI GCGC 2 cut(s) 151, 491
GluI GCNGC 3 cut(s) 324, 863, 866
GsaI CCCAGC 1 cut(s) 378
GsuI CTGGAG 2 cut(s) 360, 615
HaeIII GGCC 1 cut(s) 67
HapII CCGG 2 cut(s) 516, 726
HgaI GACGC 1 cut(s) 272
HhaI GCGC 2 cut(s) 152, 492
Hin1II CATG 2 cut(s) 111, 665
Hin6I GCGC 2 cut(s) 150, 490
HinP1I GCGC 2 cut(s) 150, 490
HindIII AAGCTT 1 cut(s) 500
HinfI GANTC 3 cut(s) 5, 542, 893
HpaII CCGG 2 cut(s) 516, 726
HphI GGTGA 2 cut(s) 69, 296
Hpy188I TCNGA 4 cut(s) 169, 214, 739, 922
Hpy188III TCNNGA 3 cut(s) 552, 602, 617
Hpy99I CGWCG 5 cut(s) 224, 233, 236, 251, 260
HpyAV CCTTC 2 cut(s) 78, 347
HpyCH4III ACNGT 1 cut(s) 749
HpyCH4IV ACGT 3 cut(s) 234, 380, 464
HpyCH4V TGCA 1 cut(s) 32
HpyF10VI GCNNNNNNNGC 4 cut(s) 323, 563, 587, 871
HpyF3I CTNAG 5 cut(s) 166, 327, 603, 851, 898
HpySE526I ACGT 3 cut(s) 234, 380, 464
Hsp92II CATG 2 cut(s) 111, 665
HspAI GCGC 2 cut(s) 150, 490
Kzo9I GATC 1 cut(s) 670
LmnI GCTCC 1 cut(s) 524
Lsp1109I GCAGC 2 cut(s) 310, 874
LweI GCATC 1 cut(s) 310
MaeI CTAG 2 cut(s) 401, 552
MaeII ACGT 3 cut(s) 234, 380, 464
MaeIII GTNAC 2 cut(s) 34, 743
MalI GATC 1 cut(s) 672
MboI GATC 1 cut(s) 670
MboII GAAGA 6 cut(s) 236, 263, 311, 425, 545, 855
MfeI CAATTG 1 cut(s) 875
MhlI GDGCHC 3 cut(s) 174, 333, 733
MluCI AATT 8 cut(s) 16, 98, 114, 363, 447, 472, 607, 875
MlyI GAGTC 1 cut(s) 551
MmeI TCCRAC 1 cut(s) 648
MroXI GAANNNNTTC 1 cut(s) 420
MseI TTAA 3 cut(s) 269, 459, 819
MslI CAYNNNNRTG 1 cut(s) 485
MspA1I CMGCKG 2 cut(s) 719, 865
MspI CCGG 2 cut(s) 516, 726
MspR9I CCNGG 2 cut(s) 64, 633
MunI CAATTG 1 cut(s) 875
MvaI CCWGG 2 cut(s) 64, 633
MvnI CGCG 1 cut(s) 150
MwoI GCNNNNNNNGC 4 cut(s) 323, 563, 587, 871
NdeII GATC 1 cut(s) 670
NlaIII CATG 2 cut(s) 111, 665
NlaIV GGNNCC 2 cut(s) 520, 657
NmuCI GTSAC 1 cut(s) 743
NsbI TGCGCA 1 cut(s) 491
NspV TTCGAA 1 cut(s) 506
PceI AGGCCT 1 cut(s) 67
PcsI WCGNNNNNNNCGW 4 cut(s) 225, 228, 252, 255
PdmI GAANNNNTTC 1 cut(s) 420
PfeI GAWTC 1 cut(s) 893
PinAI ACCGGT 1 cut(s) 725
PkrI GCNGC 3 cut(s) 325, 864, 867
PleI GAGTC 1 cut(s) 550
PpsI GAGTC 1 cut(s) 550
PshBI ATTAAT 2 cut(s) 269, 819
Psp1406I AACGTT 1 cut(s) 464
Psp6I CCWGG 2 cut(s) 62, 631
PspFI CCCAGC 1 cut(s) 374
PspGI CCWGG 2 cut(s) 62, 631
PspN4I GGNNCC 2 cut(s) 520, 657
PsrI GAACNNNNNNTAC 2 cut(s) 639, 671
PstI CTGCAG 1 cut(s) 34
PvuII CAGCTG 1 cut(s) 719
RsaI GTAC 1 cut(s) 917
RsaNI GTAC 1 cut(s) 916
RseI CAYNNNNRTG 1 cut(s) 485
SaqAI TTAA 3 cut(s) 269, 459, 819
SatI GCNGC 3 cut(s) 324, 863, 866
Sau3AI GATC 1 cut(s) 670
SchI GAGTC 1 cut(s) 551
ScrFI CCNGG 2 cut(s) 64, 633
SduI GDGCHC 3 cut(s) 174, 333, 733
SfaNI GCATC 1 cut(s) 310
SfcI CTRYAG 2 cut(s) 30, 559
SfuI TTCGAA 1 cut(s) 506
SmiMI CAYNNNNRTG 1 cut(s) 485
SmlI CTYRAG 1 cut(s) 617
SmoI CTYRAG 1 cut(s) 617
Sse9I AATT 8 cut(s) 16, 98, 114, 363, 447, 472, 607, 875
SseBI AGGCCT 1 cut(s) 67
SsiI CCGC 4 cut(s) 148, 154, 317, 865
SspMI CTAG 2 cut(s) 401, 552
StuI AGGCCT 1 cut(s) 67
StyD4I CCNGG 2 cut(s) 62, 631
TaaI ACNGT 1 cut(s) 749
TaiI ACGT 3 cut(s) 237, 383, 467
TaqI TCGA 3 cut(s) 506, 771, 910
TasI AATT 8 cut(s) 16, 98, 114, 363, 447, 472, 607, 875
TatI WGTACW 1 cut(s) 915
TauI GCSGC 1 cut(s) 868
TfiI GAWTC 1 cut(s) 893
Tru1I TTAA 3 cut(s) 269, 459, 819
Tru9I TTAA 3 cut(s) 269, 459, 819
TscAI CASTG 2 cut(s) 715, 875
TseFI GTSAC 1 cut(s) 743
TseI GCWGC 2 cut(s) 323, 862
Tsp45I GTSAC 1 cut(s) 743
TspDTI ATGAA 3 cut(s) 10, 219, 591
TspRI CASTG 2 cut(s) 715, 875
VspI ATTAAT 2 cut(s) 269, 819
XapI RAATTY 5 cut(s) 16, 363, 447, 472, 607
XbaI TCTAGA 1 cut(s) 551
XmnI GAANNNNTTC 1 cut(s) 420
XspI CTAG 2 cut(s) 401, 552
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.