RchiOBHm_Chr6g0277091

RimP N-terminal domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0015334
Physical Location & Seq
Forward (+)
39463932 .. 39467106
3175 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ24857

Sequence Viewer

Length: 945 bp
ATGGAATTAAGCACAGCATGGAATTCCAGAGCCTCTGCTATCTCATTTGCACCACGCATCACTCCCAATACTTGCAGTAGCTCTCACTTCCAACACCCTTCTCTCCCACCTCAAAGGCTTTCTTTCCCATTTTGCCCGTACCCATTTCGCTTTGTTCCCAGCAAGTCCCTAACACTGCAGGCTCGCAAGCGAAACTCAGAGCCTGAGCAGCAGCCACTTGTCAGCCCAACCATTATTGAAGAGGTTTCAGAGGATGATGAAGACGACGACGACGTTATCTTGGATGACGAGGCATCAGTGGACGATGATTATTATGGGGATGAGTCTGCGGCGGATGAGGCTGAACTGTATGATGGAGATGGAGGCGGAGGAGGTGGAATTTCACTTGCGGGGACATGGTGGGATGAAAAGGCATTGGGAATAGCTGAGGAAGTTATTCTGACCTTTGAGGGTGACTTGAAAATATATGCCTTTAAAACATTGCCAAATTTCAACATTCAAGTGCGCATTGAGAAGCTTTCGAATAAATCTGGCTCCCCAAGTATGGAAGACATAGAAGCTTTTTCTAGAACCTATAGAACAAGACTGGACGAAGCAGAGCTTGCTCGATCAGTACCTGAGAATTTATGTCTTGAGGTGTCATCTCCAGGTGTAGAAAGGGTAGTTCGGATTCCACAAGATTTGGATCGGTATAAAGATCGACCTATGTATGTAAAATATGTAACTGAGACGGATGCAACTGGTTCATTGTCAGAAAGTGATGGTGTTTTCAGGCTTGTTTCTTTCGATATGGAAACAAAATGTTGCATCTGGGGTGTAGCAGACGTGAGGATTAATAGAGAAAAAGCAGGAAAGGGGAGACCACTTAACAAAAAGCAGCGGGAGTGGCGATTGAATACAACCTTTGATTCCTTACGTTTAGTCCGGTTGTATTCTGATATTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF150

Protein Analysis

314

Amino Acids

35.37

Weight (kDa)

4.63

Isoelectric Point (pI)

51.84

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RimP_N PF02576 164 - 219 8.8e-06 RimP N-terminal domain
DUF7912 PF25498 221 - 311 5.5e-38 Domain of unknown function (DUF7912)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015334)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G77122
fragaria_vesca FvH4_2g14620
malus_domestica MD05G1016000.v1.1
prunus_persica Prupe.8G019400_v2.0.a1
pyrus_communis pycom05g00880
rosa_chinensis RchiOBHm_Chr6g0277091
rosa_laevigata RLG00000013334
rosa_roxburghii Rroxscaffold_7G00191620
rosa_rugosa Rorug06G0106300
rosa_samantha Rh6AG216300 Rh6BG220900 Rh6CG213700 Rh6CG213900 Rh6CG223700 Rh6DG213300
rosa_wichuraiana Rw6G018870

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 506
AciI CCGC 5 cut(s) 329, 332, 366, 389, 880
AclWI GGATC 1 cut(s) 693
AcsI RAATTY 4 cut(s) 22, 378, 487, 622
AfaI GTAC 2 cut(s) 140, 615
AfiI CCNNNNNNNGG 1 cut(s) 544
AgsI TTSAA 5 cut(s) 239, 460, 493, 500, 895
AjiI CACGTC 1 cut(s) 826
AjnI CCWGG 1 cut(s) 646
AluBI AGCT 5 cut(s) 81, 425, 517, 560, 601
AluI AGCT 5 cut(s) 81, 425, 517, 560, 601
Alw26I GTCTC 2 cut(s) 722, 853
AlwI GGATC 1 cut(s) 693
AlwNI CAGNNNCTG 2 cut(s) 203, 617
ApeKI GCWGC 3 cut(s) 208, 211, 877
ApoI RAATTY 4 cut(s) 22, 378, 487, 622
AseI ATTAAT 1 cut(s) 834
Asp700I GAANNNNTTC 1 cut(s) 435
AspLEI GCGC 1 cut(s) 507
AsuHPI GGTGA 1 cut(s) 464
AsuII TTCGAA 1 cut(s) 521
BbsI GAAGAC 2 cut(s) 267, 555
BbvCI CCTCAGC 1 cut(s) 426
BbvI GCAGC 3 cut(s) 220, 223, 889
BccI CCATC 3 cut(s) 347, 353, 755
BciT130I CCWGG 1 cut(s) 648
BcoDI GTCTC 2 cut(s) 722, 853
BfaI CTAG 1 cut(s) 567
BfmI CTRYAG 2 cut(s) 176, 574
BisI GCNGC 4 cut(s) 209, 212, 330, 878
BlsI GCNGC 4 cut(s) 210, 213, 331, 879
Bme1390I CCNGG 1 cut(s) 648
BmgBI CACGTC 1 cut(s) 826
BmiI GGNNCC 1 cut(s) 535
BmrFI CCNGG 1 cut(s) 648
BmsI GCATC 4 cut(s) 66, 302, 724, 816
BpiI GAAGAC 2 cut(s) 267, 555
BpmI CTGGAG 1 cut(s) 630
Bpu10I CCTNAGC 2 cut(s) 204, 426
Bpu14I TTCGAA 1 cut(s) 521
BpuEI CTTGAG 1 cut(s) 653
BsaBI GATNNNNATC 1 cut(s) 684
BsaI GGTCTC 1 cut(s) 853
BsaWI WCCGGW 1 cut(s) 924
Bsc4I CCNNNNNNNGG 1 cut(s) 544
Bse1I ACTGG 2 cut(s) 591, 745
Bse3DI GCAATG 1 cut(s) 479
Bse8I GATNNNNATC 1 cut(s) 684
BseBI CCWGG 1 cut(s) 648
BseGI GGATG 6 cut(s) 259, 289, 325, 340, 409, 739
BseJI GATNNNNATC 1 cut(s) 684
BseLI CCNNNNNNNGG 1 cut(s) 544
BseMI GCAATG 1 cut(s) 479
BseMII CTCAG 5 cut(s) 195, 210, 417, 609, 717
BseNI ACTGG 2 cut(s) 591, 745
BseRI GAGGAG 1 cut(s) 384
BseXI GCAGC 3 cut(s) 220, 223, 889
BseYI CCCAGC 1 cut(s) 158
BsiSI CCGG 1 cut(s) 925
BslFI GGGAC 2 cut(s) 151, 406
BslI CCNNNNNNNGG 1 cut(s) 544
BsmAI GTCTC 2 cut(s) 722, 853
BsmBI CGTCTC 1 cut(s) 722
BsmFI GGGAC 2 cut(s) 151, 406
Bso31I GGTCTC 1 cut(s) 853
Bsp119I TTCGAA 1 cut(s) 521
Bsp143I GATC 3 cut(s) 608, 685, 697
BspACI CCGC 5 cut(s) 329, 332, 366, 389, 880
BspCNI CTCAG 5 cut(s) 196, 209, 418, 610, 718
BspLI GGNNCC 1 cut(s) 535
BspMAI CTGCAG 1 cut(s) 180
BspPI GGATC 1 cut(s) 693
BspT104I TTCGAA 1 cut(s) 521
BspTNI GGTCTC 1 cut(s) 853
BsrDI GCAATG 1 cut(s) 479
BsrI ACTGG 2 cut(s) 591, 745
BssMI GATC 3 cut(s) 608, 685, 697
Bst2UI CCWGG 1 cut(s) 648
Bst4CI ACNGT 1 cut(s) 348
Bst6I CTCTTC 1 cut(s) 234
BstAPI GCANNNNNTGC 1 cut(s) 602
BstBI TTCGAA 1 cut(s) 521
BstC8I GCNNGC 4 cut(s) 180, 184, 188, 603
BstDEI CTNAG 5 cut(s) 196, 204, 426, 618, 726
BstF5I GGATG 6 cut(s) 259, 289, 325, 340, 409, 739
BstHHI GCGC 1 cut(s) 507
BstKTI GATC 3 cut(s) 611, 688, 700
BstMAI GTCTC 2 cut(s) 722, 853
BstMBI GATC 3 cut(s) 608, 685, 697
BstMWI GCNNNNNNNGC 4 cut(s) 208, 338, 602, 886
BstNI CCWGG 1 cut(s) 648
BstSCI CCNGG 1 cut(s) 646
BstSFI CTRYAG 2 cut(s) 176, 574
BstV1I GCAGC 3 cut(s) 220, 223, 889
BstV2I GAAGAC 2 cut(s) 267, 555
BtrI CACGTC 1 cut(s) 826
BtsCI GGATG 6 cut(s) 259, 289, 325, 340, 409, 739
BtsI GCAGTG 1 cut(s) 173
BtsIMutI CAGTG 2 cut(s) 173, 303
Cac8I GCNNGC 4 cut(s) 180, 184, 188, 603
CaiI CAGNNNCTG 2 cut(s) 203, 617
CfoI GCGC 1 cut(s) 507
Csp6I GTAC 2 cut(s) 139, 614
CspCI CAANNNNNGTGG 2 cut(s) 663, 698
CviAII CATG 2 cut(s) 18, 396
CviQI GTAC 2 cut(s) 139, 614
DdeI CTNAG 5 cut(s) 196, 204, 426, 618, 726
DpnI GATC 3 cut(s) 610, 687, 699
DpnII GATC 3 cut(s) 608, 685, 697
DraI TTTAAA 1 cut(s) 475
Eam1104I CTCTTC 1 cut(s) 234
EarI CTCTTC 1 cut(s) 234
EciI GGCGGA 2 cut(s) 347, 381
Eco31I GGTCTC 1 cut(s) 853
EcoRI GAATTC 1 cut(s) 22
EcoRII CCWGG 1 cut(s) 646
Esp3I CGTCTC 1 cut(s) 722
FaeI CATG 2 cut(s) 21, 399
FalI AAGNNNNNCTT 4 cut(s) 106, 138, 585, 617
FaqI GGGAC 2 cut(s) 151, 406
FatI CATG 2 cut(s) 17, 395
FauI CCCGC 2 cut(s) 382, 873
Fnu4HI GCNGC 4 cut(s) 209, 212, 330, 878
FokI GGATG 6 cut(s) 266, 296, 332, 347, 416, 746
Fsp4HI GCNGC 4 cut(s) 209, 212, 330, 878
FspAI RTGCGCAY 1 cut(s) 506
FspBI CTAG 1 cut(s) 567
FspI TGCGCA 1 cut(s) 506
GlaI GCGC 1 cut(s) 506
GluI GCNGC 4 cut(s) 209, 212, 330, 878
GsaI CCCAGC 1 cut(s) 162
GsuI CTGGAG 1 cut(s) 630
HapII CCGG 1 cut(s) 925
HhaI GCGC 1 cut(s) 507
Hin1II CATG 2 cut(s) 21, 399
Hin6I GCGC 1 cut(s) 505
HinP1I GCGC 1 cut(s) 505
HindIII AAGCTT 2 cut(s) 515, 558
HinfI GANTC 3 cut(s) 323, 670, 908
HpaII CCGG 1 cut(s) 925
HphI GGTGA 1 cut(s) 464
Hpy166II GTNNAC 1 cut(s) 301
Hpy188I TCNGA 6 cut(s) 199, 250, 441, 669, 754, 937
Hpy188III TCNNGA 3 cut(s) 27, 567, 632
Hpy8I GTNNAC 1 cut(s) 301
Hpy99I CGWCG 3 cut(s) 269, 272, 275
HpyAV CCTTC 1 cut(s) 108
HpyCH4III ACNGT 1 cut(s) 348
HpyCH4IV ACGT 3 cut(s) 273, 825, 916
HpyCH4V TGCA 5 cut(s) 50, 75, 178, 737, 807
HpyF10VI GCNNNNNNNGC 4 cut(s) 208, 338, 602, 886
HpyF3I CTNAG 5 cut(s) 196, 204, 426, 618, 726
HpySE526I ACGT 3 cut(s) 273, 825, 916
Hsp92II CATG 2 cut(s) 21, 399
HspAI GCGC 1 cut(s) 505
Kzo9I GATC 3 cut(s) 608, 685, 697
LmnI GCTCC 1 cut(s) 539
Lsp1109I GCAGC 3 cut(s) 220, 223, 889
LweI GCATC 4 cut(s) 66, 302, 724, 816
MaeI CTAG 1 cut(s) 567
MaeII ACGT 3 cut(s) 273, 825, 916
MaeIII GTNAC 2 cut(s) 452, 721
MalI GATC 3 cut(s) 610, 687, 699
MboI GATC 3 cut(s) 608, 685, 697
MboII GAAGA 3 cut(s) 251, 272, 560
MluCI AATT 5 cut(s) 5, 22, 378, 487, 622
MlyI GAGTC 1 cut(s) 332
MmeI TCCRAC 1 cut(s) 115
MroXI GAANNNNTTC 1 cut(s) 435
MseI TTAA 5 cut(s) 8, 474, 834, 867, 943
MslI CAYNNNNRTG 1 cut(s) 500
MspA1I CMGCKG 1 cut(s) 880
MspI CCGG 1 cut(s) 925
MspR9I CCNGG 1 cut(s) 648
MvaI CCWGG 1 cut(s) 648
MwoI GCNNNNNNNGC 4 cut(s) 208, 338, 602, 886
NdeII GATC 3 cut(s) 608, 685, 697
NlaIII CATG 2 cut(s) 21, 399
NlaIV GGNNCC 1 cut(s) 535
NmuCI GTSAC 1 cut(s) 452
NsbI TGCGCA 1 cut(s) 506
NspV TTCGAA 1 cut(s) 521
PcsI WCGNNNNNNNCGW 1 cut(s) 270
PdmI GAANNNNTTC 1 cut(s) 435
PfeI GAWTC 2 cut(s) 670, 908
PkrI GCNGC 4 cut(s) 210, 213, 331, 879
PleI GAGTC 1 cut(s) 331
PpsI GAGTC 1 cut(s) 331
PshBI ATTAAT 1 cut(s) 834
Psp6I CCWGG 1 cut(s) 646
PspFI CCCAGC 1 cut(s) 158
PspGI CCWGG 1 cut(s) 646
PspN4I GGNNCC 1 cut(s) 535
PstI CTGCAG 1 cut(s) 180
PstNI CAGNNNCTG 2 cut(s) 203, 617
RsaI GTAC 2 cut(s) 140, 615
RsaNI GTAC 2 cut(s) 139, 614
RseI CAYNNNNRTG 1 cut(s) 500
SaqAI TTAA 5 cut(s) 8, 474, 834, 867, 943
SatI GCNGC 4 cut(s) 209, 212, 330, 878
Sau3AI GATC 3 cut(s) 608, 685, 697
SchI GAGTC 1 cut(s) 332
ScrFI CCNGG 1 cut(s) 648
SfaNI GCATC 4 cut(s) 66, 302, 724, 816
SfcI CTRYAG 2 cut(s) 176, 574
SfuI TTCGAA 1 cut(s) 521
SmiMI CAYNNNNRTG 1 cut(s) 500
SmlI CTYRAG 1 cut(s) 632
SmoI CTYRAG 1 cut(s) 632
Sse9I AATT 5 cut(s) 5, 22, 378, 487, 622
SsiI CCGC 5 cut(s) 329, 332, 366, 389, 880
SspMI CTAG 1 cut(s) 567
StyD4I CCNGG 1 cut(s) 646
TaaI ACNGT 1 cut(s) 348
TaiI ACGT 3 cut(s) 276, 828, 919
TaqI TCGA 4 cut(s) 521, 607, 700, 786
TasI AATT 5 cut(s) 5, 22, 378, 487, 622
TauI GCSGC 1 cut(s) 332
TfiI GAWTC 2 cut(s) 670, 908
Tru1I TTAA 5 cut(s) 8, 474, 834, 867, 943
Tru9I TTAA 5 cut(s) 8, 474, 834, 867, 943
TscAI CASTG 2 cut(s) 180, 303
TseFI GTSAC 1 cut(s) 452
TseI GCWGC 3 cut(s) 208, 211, 877
Tsp45I GTSAC 1 cut(s) 452
TspDTI ATGAA 3 cut(s) 273, 420, 735
TspGWI ACGGA 1 cut(s) 746
TspRI CASTG 2 cut(s) 180, 303
VspI ATTAAT 1 cut(s) 834
XapI RAATTY 4 cut(s) 22, 378, 487, 622
XbaI TCTAGA 1 cut(s) 566
XmnI GAANNNNTTC 1 cut(s) 435
XspI CTAG 1 cut(s) 567
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.