Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0015334

Physical Location & Seq

Genomic Coordinates Reverse (-)

32324852 .. 32327918

Gene Structure 3067 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00191620.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 918 bp

ATGGAATTAAGCACAGCATGGAATTCCAGAGCCTCTGCTATCTCATTTGCCCCACTCATCACTCCCAATACTTGCAGTAGCTCTCTCTTCCAACACCCTTCTCTCCCACCTCACATGCTTTCTTTCCCATTTTGCCCGTACCCATTTCGCTTTGTTCCCAACAAGTCCCTAACACTGCAGGCTCGCAAGCGAAACTCGGAGCCTGAGCAGCAGCCACTTGTCAGCCCAACCATTATTGAAGAGGTTTCAGAGGATGATGAAGACGACGACGACGTTATCTTGGATGACTTTGATGACGAGGCATCAATGGATGATGATTATTATGGGGATGAGTCTGCGGCGGATGAGGCTGAACTGCATGATGGAGATGGAGGCGGAGGAGGTGGAATATCTCTTGCGGGGACATGGTGGGATGAAAAAGCATTGGGAATAGCTGAGGAAGTTATTCTGACCTTTGAGGGTGACTTGAAAATATATGCCTTTAAAACATTGCCAAATTTCAACATTCAAGTGCGCATTGAGAAGCTTTCGAATAAATCTGGCTCCCCAAGTATGGAAGACATAGAAGCTTTTTCTAGAACCTATAGAACAAGACTGGACGAAGCAGAGCTTGCTCGATCAGTACCTGAGAACTTATGTCTTGAGGTGTCATCTCCAGGTGTAGAAAGGGTAGTTCGGATTCCACAAGATTTGGATCGGTATAAAGATCGACCTATGTATGTAAAATATGTAACTGAGACGGATGCAACTGGTTCATTATCAGAAAGTGATGGTGTTTTCAGGCTTGTTTCTTTCCATATGGAAACAAAATGTTGCATCTGGGGTGTAGCAGATGTGAGGATTAATAGAGAAAAAGCTGGAAAAGGGAGACCACTTAACAAAAAAGCAGCGGGAGTGGCGATTGAATACACCCTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF150

Protein Analysis

305

Amino Acids

33.95

Weight (kDa)

4.51

Isoelectric Point (pI)

51.73

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RimP_N	PF02576	167 - 222	8.4e-06	RimP N-terminal domain
DUF7912	PF25498	224 - 298	5.7e-28	Domain of unknown function (DUF7912)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0015334)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G77122
fragaria_vesca	FvH4_2g14620
malus_domestica	MD05G1016000.v1.1
prunus_persica	Prupe.8G019400_v2.0.a1
pyrus_communis	pycom05g00880
rosa_chinensis	RchiOBHm_Chr6g0277091
rosa_laevigata	RLG00000013334
rosa_roxburghii	Rroxscaffold_7G00191620
rosa_rugosa	Rorug06G0106300
rosa_samantha	Rh6AG216300 Rh6BG220900 Rh6CG213700 Rh6CG213900 Rh6CG223700 Rh6DG213300
rosa_wichuraiana	Rw6G018870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	515
AciI	CCGC	5 cut(s)	338, 341, 375, 398, 890
AclWI	GGATC	1 cut(s)	702
AcsI	RAATTY	2 cut(s)	22, 496
AfaI	GTAC	2 cut(s)	140, 624
AfiI	CCNNNNNNNGG	1 cut(s)	553
AgsI	TTSAA	5 cut(s)	239, 469, 502, 509, 905
AjnI	CCWGG	1 cut(s)	655
AluBI	AGCT	6 cut(s)	81, 434, 526, 569, 610, 857
AluI	AGCT	6 cut(s)	81, 434, 526, 569, 610, 857
Alw26I	GTCTC	2 cut(s)	731, 862
AlwI	GGATC	1 cut(s)	702
AlwNI	CAGNNNCTG	1 cut(s)	626
ApeKI	GCWGC	3 cut(s)	208, 211, 887
ApoI	RAATTY	2 cut(s)	22, 496
AseI	ATTAAT	1 cut(s)	843
Asp700I	GAANNNNTTC	1 cut(s)	444
AspLEI	GCGC	1 cut(s)	516
AsuHPI	GGTGA	1 cut(s)	473
AsuII	TTCGAA	1 cut(s)	530
BbsI	GAAGAC	2 cut(s)	267, 564
BbvCI	CCTCAGC	1 cut(s)	435
BbvI	GCAGC	3 cut(s)	220, 223, 899
BccI	CCATC	3 cut(s)	356, 362, 764
BciT130I	CCWGG	1 cut(s)	657
BcoDI	GTCTC	2 cut(s)	731, 862
BfaI	CTAG	1 cut(s)	576
BfmI	CTRYAG	2 cut(s)	176, 583
BisI	GCNGC	4 cut(s)	209, 212, 339, 888
BlsI	GCNGC	4 cut(s)	210, 213, 340, 889
Bme1390I	CCNGG	1 cut(s)	657
BmiI	GGNNCC	2 cut(s)	201, 544
BmrFI	CCNGG	1 cut(s)	657
BmsI	GCATC	3 cut(s)	311, 733, 825
BpiI	GAAGAC	2 cut(s)	267, 564
BpmI	CTGGAG	1 cut(s)	639
Bpu10I	CCTNAGC	2 cut(s)	204, 435
Bpu14I	TTCGAA	1 cut(s)	530
BpuEI	CTTGAG	1 cut(s)	662
BsaBI	GATNNNNATC	1 cut(s)	693
BsaI	GGTCTC	1 cut(s)	862
Bsc4I	CCNNNNNNNGG	1 cut(s)	553
Bse1I	ACTGG	2 cut(s)	600, 754
Bse3DI	GCAATG	1 cut(s)	488
Bse8I	GATNNNNATC	1 cut(s)	693
BseBI	CCWGG	1 cut(s)	657
BseGI	GGATG	7 cut(s)	259, 289, 316, 334, 349, 418, 748
BseJI	GATNNNNATC	1 cut(s)	693
BseLI	CCNNNNNNNGG	1 cut(s)	553
BseMI	GCAATG	1 cut(s)	488
BseMII	CTCAG	4 cut(s)	195, 426, 618, 726
BseNI	ACTGG	2 cut(s)	600, 754
BseRI	GAGGAG	1 cut(s)	393
BseXI	GCAGC	3 cut(s)	220, 223, 899
BslFI	GGGAC	2 cut(s)	151, 415
BslI	CCNNNNNNNGG	1 cut(s)	553
BsmAI	GTCTC	2 cut(s)	731, 862
BsmBI	CGTCTC	1 cut(s)	731
BsmFI	GGGAC	2 cut(s)	151, 415
Bso31I	GGTCTC	1 cut(s)	862
Bsp119I	TTCGAA	1 cut(s)	530
Bsp143I	GATC	3 cut(s)	617, 694, 706
BspACI	CCGC	5 cut(s)	338, 341, 375, 398, 890
BspCNI	CTCAG	4 cut(s)	196, 427, 619, 727
BspLI	GGNNCC	2 cut(s)	201, 544
BspMAI	CTGCAG	1 cut(s)	180
BspPI	GGATC	1 cut(s)	702
BspT104I	TTCGAA	1 cut(s)	530
BspTNI	GGTCTC	1 cut(s)	862
BsrDI	GCAATG	1 cut(s)	488
BsrI	ACTGG	2 cut(s)	600, 754
BssMI	GATC	3 cut(s)	617, 694, 706
Bst2UI	CCWGG	1 cut(s)	657
Bst6I	CTCTTC	2 cut(s)	92, 234
BstAPI	GCANNNNNTGC	1 cut(s)	611
BstBI	TTCGAA	1 cut(s)	530
BstC8I	GCNNGC	4 cut(s)	180, 184, 188, 612
BstDEI	CTNAG	4 cut(s)	204, 435, 627, 735
BstF5I	GGATG	7 cut(s)	259, 289, 316, 334, 349, 418, 748
BstHHI	GCGC	1 cut(s)	516
BstKTI	GATC	3 cut(s)	620, 697, 709
BstMAI	GTCTC	2 cut(s)	731, 862
BstMBI	GATC	3 cut(s)	617, 694, 706
BstMWI	GCNNNNNNNGC	4 cut(s)	208, 347, 611, 896
BstNI	CCWGG	1 cut(s)	657
BstNSI	RCATGY	1 cut(s)	118
BstSCI	CCNGG	1 cut(s)	655
BstSFI	CTRYAG	2 cut(s)	176, 583
BstV1I	GCAGC	3 cut(s)	220, 223, 899
BstV2I	GAAGAC	2 cut(s)	267, 564
BtsCI	GGATG	7 cut(s)	259, 289, 316, 334, 349, 418, 748
BtsI	GCAGTG	1 cut(s)	173
BtsIMutI	CAGTG	1 cut(s)	173
Cac8I	GCNNGC	4 cut(s)	180, 184, 188, 612
CaiI	CAGNNNCTG	1 cut(s)	626
CfoI	GCGC	1 cut(s)	516
Csp6I	GTAC	2 cut(s)	139, 623
CspCI	CAANNNNNGTGG	2 cut(s)	672, 707
CviAII	CATG	4 cut(s)	18, 115, 359, 405
CviQI	GTAC	2 cut(s)	139, 623
DdeI	CTNAG	4 cut(s)	204, 435, 627, 735
DpnI	GATC	3 cut(s)	619, 696, 708
DpnII	GATC	3 cut(s)	617, 694, 706
DraI	TTTAAA	1 cut(s)	484
Eam1104I	CTCTTC	2 cut(s)	92, 234
EarI	CTCTTC	2 cut(s)	92, 234
EciI	GGCGGA	2 cut(s)	356, 390
Eco31I	GGTCTC	1 cut(s)	862
EcoRI	GAATTC	1 cut(s)	22
EcoRII	CCWGG	1 cut(s)	655
Esp3I	CGTCTC	1 cut(s)	731
FaeI	CATG	4 cut(s)	21, 118, 362, 408
FalI	AAGNNNNNCTT	2 cut(s)	594, 626
FaqI	GGGAC	2 cut(s)	151, 415
FatI	CATG	4 cut(s)	17, 114, 358, 404
FauI	CCCGC	2 cut(s)	391, 883
FauNDI	CATATG	1 cut(s)	798
Fnu4HI	GCNGC	4 cut(s)	209, 212, 339, 888
FokI	GGATG	7 cut(s)	266, 296, 323, 341, 356, 425, 755
Fsp4HI	GCNGC	4 cut(s)	209, 212, 339, 888
FspAI	RTGCGCAY	1 cut(s)	515
FspBI	CTAG	1 cut(s)	576
FspI	TGCGCA	1 cut(s)	515
GlaI	GCGC	1 cut(s)	515
GluI	GCNGC	4 cut(s)	209, 212, 339, 888
GsuI	CTGGAG	1 cut(s)	639
HhaI	GCGC	1 cut(s)	516
Hin1II	CATG	4 cut(s)	21, 118, 362, 408
Hin6I	GCGC	1 cut(s)	514
HinP1I	GCGC	1 cut(s)	514
HindIII	AAGCTT	2 cut(s)	524, 567
HinfI	GANTC	2 cut(s)	332, 679
HphI	GGTGA	1 cut(s)	473
Hpy188I	TCNGA	5 cut(s)	199, 250, 450, 678, 763
Hpy188III	TCNNGA	3 cut(s)	27, 576, 641
Hpy99I	CGWCG	3 cut(s)	269, 272, 275
HpyAV	CCTTC	1 cut(s)	108
HpyCH4IV	ACGT	1 cut(s)	273
HpyCH4V	TGCA	5 cut(s)	75, 178, 358, 746, 816
HpyF10VI	GCNNNNNNNGC	4 cut(s)	208, 347, 611, 896
HpyF3I	CTNAG	4 cut(s)	204, 435, 627, 735
HpySE526I	ACGT	1 cut(s)	273
Hsp92II	CATG	4 cut(s)	21, 118, 362, 408
HspAI	GCGC	1 cut(s)	514
Kzo9I	GATC	3 cut(s)	617, 694, 706
LmnI	GCTCC	2 cut(s)	199, 548
Lsp1109I	GCAGC	3 cut(s)	220, 223, 899
LweI	GCATC	3 cut(s)	311, 733, 825
MaeI	CTAG	1 cut(s)	576
MaeII	ACGT	1 cut(s)	273
MaeIII	GTNAC	2 cut(s)	461, 730
MalI	GATC	3 cut(s)	619, 696, 708
MboI	GATC	3 cut(s)	617, 694, 706
MboII	GAAGA	4 cut(s)	79, 251, 272, 569
MluCI	AATT	3 cut(s)	5, 22, 496
MlyI	GAGTC	1 cut(s)	341
MmeI	TCCRAC	1 cut(s)	115
MroXI	GAANNNNTTC	1 cut(s)	444
MseI	TTAA	4 cut(s)	8, 483, 843, 876
MslI	CAYNNNNRTG	1 cut(s)	509
MspA1I	CMGCKG	1 cut(s)	890
MspR9I	CCNGG	1 cut(s)	657
MvaI	CCWGG	1 cut(s)	657
MwoI	GCNNNNNNNGC	4 cut(s)	208, 347, 611, 896
NdeI	CATATG	1 cut(s)	798
NdeII	GATC	3 cut(s)	617, 694, 706
NlaIII	CATG	4 cut(s)	21, 118, 362, 408
NlaIV	GGNNCC	2 cut(s)	201, 544
NmuCI	GTSAC	1 cut(s)	461
NsbI	TGCGCA	1 cut(s)	515
NspI	RCATGY	1 cut(s)	118
NspV	TTCGAA	1 cut(s)	530
PcsI	WCGNNNNNNNCGW	1 cut(s)	270
PdmI	GAANNNNTTC	1 cut(s)	444
PfeI	GAWTC	1 cut(s)	679
PkrI	GCNGC	4 cut(s)	210, 213, 340, 889
PleI	GAGTC	1 cut(s)	340
PpsI	GAGTC	1 cut(s)	340
PshBI	ATTAAT	1 cut(s)	843
Psp6I	CCWGG	1 cut(s)	655
PspGI	CCWGG	1 cut(s)	655
PspN4I	GGNNCC	2 cut(s)	201, 544
PstI	CTGCAG	1 cut(s)	180
PstNI	CAGNNNCTG	1 cut(s)	626
RsaI	GTAC	2 cut(s)	140, 624
RsaNI	GTAC	2 cut(s)	139, 623
RseI	CAYNNNNRTG	1 cut(s)	509
SaqAI	TTAA	4 cut(s)	8, 483, 843, 876
SatI	GCNGC	4 cut(s)	209, 212, 339, 888
Sau3AI	GATC	3 cut(s)	617, 694, 706
SchI	GAGTC	1 cut(s)	341
ScrFI	CCNGG	1 cut(s)	657
SfaNI	GCATC	3 cut(s)	311, 733, 825
SfcI	CTRYAG	2 cut(s)	176, 583
SfuI	TTCGAA	1 cut(s)	530
SmiMI	CAYNNNNRTG	1 cut(s)	509
SmlI	CTYRAG	1 cut(s)	641
SmoI	CTYRAG	1 cut(s)	641
Sse9I	AATT	3 cut(s)	5, 22, 496
SsiI	CCGC	5 cut(s)	338, 341, 375, 398, 890
SspMI	CTAG	1 cut(s)	576
StyD4I	CCNGG	1 cut(s)	655
TaiI	ACGT	1 cut(s)	276
TaqI	TCGA	3 cut(s)	530, 616, 709
TasI	AATT	3 cut(s)	5, 22, 496
TauI	GCSGC	1 cut(s)	341
TfiI	GAWTC	1 cut(s)	679
Tru1I	TTAA	4 cut(s)	8, 483, 843, 876
Tru9I	TTAA	4 cut(s)	8, 483, 843, 876
TscAI	CASTG	1 cut(s)	180
TseFI	GTSAC	1 cut(s)	461
TseI	GCWGC	3 cut(s)	208, 211, 887
Tsp45I	GTSAC	1 cut(s)	461
TspDTI	ATGAA	3 cut(s)	273, 429, 744
TspGWI	ACGGA	1 cut(s)	755
TspRI	CASTG	1 cut(s)	180
VspI	ATTAAT	1 cut(s)	843
XapI	RAATTY	2 cut(s)	22, 496
XbaI	TCTAGA	1 cut(s)	575
XceI	RCATGY	1 cut(s)	118
XmnI	GAANNNNTTC	1 cut(s)	444
XspI	CTAG	1 cut(s)	576

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.